Wall clock time and date at job start Sat Apr 11 2020 07:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 120.00024 * 2 1 4 4 C 1.50697 * 109.47009 * 275.92863 * 3 2 1 5 5 N 1.30508 * 125.64974 * 84.26724 * 4 3 2 6 6 C 1.34130 * 109.25356 * 179.89217 * 5 4 3 7 7 C 1.34671 * 108.01707 * 0.36421 * 6 5 4 8 8 N 1.35041 * 125.65070 * 264.56941 * 4 3 2 9 9 C 1.46501 * 126.39621 * 359.94344 * 8 4 3 10 10 C 1.34779 * 120.00523 * 179.97438 * 2 1 3 11 11 O 1.21583 * 120.00478 * 180.02562 * 10 2 1 12 12 N 1.34774 * 119.99416 * 0.02562 * 10 2 1 13 13 C 1.46507 * 119.99828 * 179.97438 * 12 10 2 14 14 C 1.50695 * 109.47054 * 180.02562 * 13 12 10 15 15 C 1.38303 * 119.93358 * 89.99931 * 14 13 12 16 16 C 1.38102 * 120.06945 * 180.02562 * 15 14 13 17 17 C 1.38879 * 119.93047 * 359.97438 * 16 15 14 18 18 O 1.35751 * 120.06682 * 179.97438 * 17 16 15 19 19 C 1.34831 * 117.00179 * 5.41256 * 18 17 16 20 20 H 1.07998 * 119.99547 * 355.02342 * 19 18 17 21 21 C 1.38651 * 119.99977 * 175.02223 * 19 18 17 22 22 N 1.31554 * 120.00220 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99985 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47267 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47024 * 119.99860 * 23 21 19 26 26 H 1.48496 * 109.47398 * 239.99895 * 23 21 19 27 27 C 1.38880 * 119.86063 * 0.27040 * 17 16 15 28 28 C 1.38092 * 119.93217 * 359.45127 * 27 17 16 29 29 H 1.08998 * 109.47194 * 271.28945 * 1 2 3 30 30 H 1.08997 * 109.47030 * 31.29748 * 1 2 3 31 31 H 1.09007 * 109.46704 * 151.29132 * 1 2 3 32 32 H 1.09009 * 109.46720 * 35.92935 * 3 2 1 33 33 H 1.08998 * 109.47402 * 155.92521 * 3 2 1 34 34 H 1.07994 * 125.98397 * 180.11701 * 6 5 4 35 35 H 1.08006 * 126.58118 * 179.74140 * 7 6 5 36 36 H 1.08997 * 109.46982 * 93.65486 * 9 8 4 37 37 H 1.08998 * 109.47119 * 213.65604 * 9 8 4 38 38 H 1.09004 * 109.46826 * 333.65514 * 9 8 4 39 39 H 0.97000 * 120.00547 * 0.02562 * 12 10 2 40 40 H 1.08998 * 109.46988 * 59.99773 * 13 12 10 41 41 H 1.08998 * 109.46694 * 300.00117 * 13 12 10 42 42 H 1.07999 * 119.96327 * 359.97438 * 15 14 13 43 43 H 1.08002 * 120.03146 * 179.97438 * 16 15 14 44 44 H 0.97001 * 120.00646 * 179.97438 * 22 21 19 45 45 H 1.08008 * 120.02959 * 179.72303 * 27 17 16 46 46 H 1.08006 * 119.96777 * 180.27170 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3216 1.7772 -1.4132 5 7 1.4221 2.4739 -2.0526 6 6 1.8725 2.7528 -3.2849 7 6 3.0941 2.2015 -3.4166 8 7 3.3794 1.5824 -2.2297 9 6 4.6039 0.8465 -1.9054 10 6 2.1390 -1.1672 0.0005 11 8 3.3548 -1.1671 0.0010 12 7 1.4651 -2.3343 0.0005 13 6 2.1976 -3.6031 0.0005 14 6 1.2184 -4.7485 -0.0001 15 6 0.7704 -5.2728 -1.1989 16 6 -0.1274 -6.3221 -1.2028 17 6 -0.5800 -6.8513 -0.0012 18 8 -1.4630 -7.8824 -0.0017 19 6 -1.7750 -8.4205 -1.1980 20 1 -1.3910 -7.9785 -2.1055 21 6 -2.5888 -9.5411 -1.2630 22 7 -3.0561 -10.0798 -0.1575 23 14 -3.0217 -10.2862 -2.9204 24 1 -2.3744 -9.4997 -4.0009 25 1 -2.5393 -11.6896 -2.9734 26 1 -4.4950 -10.2619 -3.1045 27 6 -0.1322 -6.3192 1.2010 28 6 0.7700 -5.2738 1.1982 29 1 -0.3633 0.0231 1.0274 30 1 -0.3633 0.8781 -0.5338 31 1 -0.3633 -0.9014 -0.4937 32 1 1.6584 1.9995 0.6031 33 1 3.1917 1.1143 0.4192 34 1 1.3459 3.3170 -4.0403 35 1 3.7267 2.2398 -4.2912 36 1 4.5033 -0.1883 -2.2327 37 1 5.4505 1.3077 -2.4140 38 1 4.7690 0.8725 -0.8283 39 1 0.4951 -2.3344 -0.0002 40 1 2.8243 -3.6608 0.8905 41 1 2.8243 -3.6607 -0.8895 42 1 1.1224 -4.8606 -2.1330 43 1 -0.4772 -6.7308 -2.1393 44 1 -3.6258 -10.8636 -0.2030 45 1 -0.4858 -6.7257 2.1371 46 1 1.1220 -4.8625 2.1328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775431841.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:55 Heat of formation + Delta-G solvation = 45.433211 kcal Electronic energy + Delta-G solvation = -28914.776597 eV Core-core repulsion = 24807.096995 eV Total energy + Delta-G solvation = -4107.679602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.29758 -40.20432 -39.12503 -36.99870 -35.76895 -34.57126 -34.13762 -32.40855 -31.13990 -30.30347 -29.64075 -27.72074 -27.01485 -26.38411 -25.51489 -24.30664 -22.08084 -21.60025 -20.80491 -20.54406 -19.73291 -18.26831 -18.07802 -17.36624 -17.03332 -16.72594 -15.93926 -15.63151 -15.02258 -14.79000 -14.67476 -14.49103 -14.33112 -14.05061 -13.86047 -13.67847 -13.59496 -13.42205 -13.13338 -13.03502 -12.82146 -12.74648 -12.71775 -12.58400 -12.10502 -12.07646 -11.70501 -11.41969 -10.99874 -10.79934 -10.71604 -10.49297 -10.28626 -10.18742 -9.78332 -9.45068 -9.21099 -8.94168 -8.80240 -8.61214 -8.31332 -7.35931 -6.55305 -4.14139 1.68161 2.02496 2.10390 2.54964 2.65534 3.04630 3.07894 3.08670 3.13778 3.15386 3.88367 3.93923 4.21104 4.48193 4.54102 4.57895 4.87814 4.94429 4.95376 4.99339 5.12363 5.14670 5.21070 5.26828 5.32711 5.39530 5.41512 5.51641 5.57928 5.63804 5.78317 5.85371 6.07736 6.09568 6.16587 6.32432 6.51851 6.53946 6.58019 6.74890 6.78326 6.93165 6.95190 7.12578 7.24853 7.32750 7.68554 7.85433 7.89291 7.89575 8.49060 8.90160 9.57996 10.62217 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.001981 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.349512 B =14128.439541 C =14733.853534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.628 5.628 3 C 0.218 3.782 4 C 0.184 3.816 5 N -0.484 5.484 6 C -0.031 4.031 7 C -0.057 4.057 8 N -0.445 5.445 9 C 0.076 3.924 10 C 0.704 3.296 11 O -0.598 6.598 12 N -0.735 5.735 13 C 0.198 3.802 14 C -0.216 4.216 15 C -0.050 4.050 16 C -0.237 4.237 17 C 0.161 3.839 18 O -0.173 6.173 19 C -0.393 4.393 20 H 0.094 0.906 21 C 0.040 3.960 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.195 4.195 28 C -0.053 4.053 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.169 0.831 35 H 0.172 0.828 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.399 0.601 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.107 0.893 43 H 0.128 0.872 44 H 0.271 0.729 45 H 0.118 0.882 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.170 22.002 -2.405 24.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.365 5.365 3 C 0.093 3.907 4 C -0.079 4.079 5 N -0.203 5.203 6 C -0.180 4.180 7 C -0.192 4.192 8 N -0.127 5.127 9 C -0.066 4.066 10 C 0.406 3.594 11 O -0.478 6.478 12 N -0.390 5.390 13 C 0.075 3.925 14 C -0.217 4.217 15 C -0.069 4.069 16 C -0.256 4.256 17 C 0.106 3.894 18 O -0.075 6.075 19 C -0.469 4.469 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.493 5.493 23 Si 0.767 3.233 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.215 4.215 28 C -0.072 4.072 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.186 0.814 35 H 0.190 0.810 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.235 0.765 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.146 0.854 44 H 0.081 0.919 45 H 0.136 0.864 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.163 21.775 -1.780 24.534 hybrid contribution 0.018 -0.699 -1.526 1.679 sum 11.181 21.076 -3.306 24.086 Atomic orbital electron populations 1.21792 0.78996 1.03742 1.02003 1.46983 1.06839 1.04202 1.78509 1.19471 0.99319 0.84443 0.87492 1.23780 0.85290 1.02065 0.96784 1.70205 1.28070 1.15921 1.06122 1.22282 0.94504 1.05612 0.95629 1.22749 1.00920 1.04454 0.91035 1.45323 1.16054 1.39627 1.11694 1.22093 0.83741 0.96960 1.03790 1.15960 0.85342 0.80453 0.77647 1.90841 1.11484 1.86438 1.59026 1.45684 1.10286 1.04448 1.78627 1.19827 0.92114 0.78943 1.01588 1.19211 1.06596 1.02243 0.93683 1.20637 0.95091 0.94734 0.96411 1.21159 1.04452 1.01527 0.98512 1.19443 0.88226 0.88417 0.93306 1.83978 1.50377 1.40029 1.33153 1.21405 1.31399 1.11082 0.83028 0.88868 1.25323 0.96119 0.95627 0.99416 1.70041 1.31094 1.21093 1.27060 0.85625 0.78658 0.79084 0.79954 1.19045 1.20046 1.20046 1.20216 1.03605 1.01356 0.96299 1.20531 0.95298 0.94760 0.96581 0.92239 0.89910 0.91398 0.87671 0.88020 0.81399 0.81025 0.90051 0.90264 0.88742 0.76513 0.91631 0.91949 0.87525 0.85433 0.91901 0.86351 0.86930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.25 59.84 0.61 1.29 16 2 N -0.63 -6.63 2.86 -188.74 -0.54 -7.17 16 3 C 0.22 2.08 5.84 -5.19 -0.03 2.05 16 4 C 0.18 2.06 7.48 -155.41 -1.16 0.90 16 5 N -0.48 -5.95 11.25 -10.82 -0.12 -6.07 16 6 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 7 C -0.06 -0.54 11.58 -16.56 -0.19 -0.73 16 8 N -0.45 -4.54 3.15 -121.28 -0.38 -4.92 16 9 C 0.08 0.62 10.20 59.85 0.61 1.23 16 10 C 0.70 9.08 8.28 -86.92 -0.72 8.36 16 11 O -0.60 -8.86 14.62 5.29 0.08 -8.78 16 12 N -0.73 -9.20 5.42 -66.41 -0.36 -9.56 16 13 C 0.20 2.70 5.80 -5.19 -0.03 2.67 16 14 C -0.22 -3.39 5.25 -104.57 -0.55 -3.94 16 15 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 16 C -0.24 -4.87 9.17 -39.39 -0.36 -5.23 16 17 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 18 O -0.17 -4.75 9.76 0.04 0.00 -4.75 16 19 C -0.39 -10.62 9.49 30.89 0.29 -10.33 16 20 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -24.52 13.67 55.48 0.76 -23.76 16 23 Si 0.94 19.96 29.55 -169.99 -5.02 14.93 16 24 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 C -0.20 -3.87 9.99 -39.40 -0.39 -4.27 16 28 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 31 H 0.07 0.59 6.30 -51.92 -0.33 0.26 16 32 H 0.11 0.80 8.12 -51.92 -0.42 0.38 16 33 H 0.10 0.95 5.96 -51.93 -0.31 0.64 16 34 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.78 6.53 -51.93 -0.34 0.44 16 39 H 0.40 4.63 6.17 -40.82 -0.25 4.38 16 40 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 41 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 44 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.12 2.28 8.06 -52.48 -0.42 1.85 16 46 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -32.86 389.45 -8.97 -41.82 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.99 Total: 8.99 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -3.26 Total: -6.61 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.64 Total: -51.48 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.08 Total: -13.53 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.86 -8.97 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775431841.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.257 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds