Wall clock time and date at job start Sat Apr 11 2020 07:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 120.00024 * 2 1 4 4 C 1.50697 * 109.47009 * 275.92863 * 3 2 1 5 5 N 1.30508 * 125.64974 * 84.26724 * 4 3 2 6 6 C 1.34130 * 109.25356 * 179.89217 * 5 4 3 7 7 C 1.34671 * 108.01707 * 0.36421 * 6 5 4 8 8 N 1.35041 * 125.65070 * 264.56941 * 4 3 2 9 9 C 1.46501 * 126.39621 * 359.94344 * 8 4 3 10 10 C 1.34779 * 120.00523 * 179.97438 * 2 1 3 11 11 O 1.21583 * 120.00478 * 180.02562 * 10 2 1 12 12 N 1.34774 * 119.99416 * 0.02562 * 10 2 1 13 13 C 1.46507 * 119.99828 * 179.97438 * 12 10 2 14 14 C 1.50695 * 109.47054 * 180.02562 * 13 12 10 15 15 C 1.38303 * 119.93358 * 89.99931 * 14 13 12 16 16 C 1.38102 * 120.06945 * 180.02562 * 15 14 13 17 17 C 1.38879 * 119.93047 * 359.97438 * 16 15 14 18 18 O 1.35751 * 120.06682 * 179.97438 * 17 16 15 19 19 C 1.34831 * 117.00179 * 5.41256 * 18 17 16 20 20 H 1.07998 * 119.99547 * 355.02342 * 19 18 17 21 21 C 1.38651 * 119.99977 * 175.02223 * 19 18 17 22 22 N 1.31554 * 120.00220 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99985 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47267 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47024 * 119.99860 * 23 21 19 26 26 H 1.48496 * 109.47398 * 239.99895 * 23 21 19 27 27 C 1.38880 * 119.86063 * 0.27040 * 17 16 15 28 28 C 1.38092 * 119.93217 * 359.45127 * 27 17 16 29 29 H 1.08998 * 109.47194 * 271.28945 * 1 2 3 30 30 H 1.08997 * 109.47030 * 31.29748 * 1 2 3 31 31 H 1.09007 * 109.46704 * 151.29132 * 1 2 3 32 32 H 1.09009 * 109.46720 * 35.92935 * 3 2 1 33 33 H 1.08998 * 109.47402 * 155.92521 * 3 2 1 34 34 H 1.07994 * 125.98397 * 180.11701 * 6 5 4 35 35 H 1.08006 * 126.58118 * 179.74140 * 7 6 5 36 36 H 1.08997 * 109.46982 * 93.65486 * 9 8 4 37 37 H 1.08998 * 109.47119 * 213.65604 * 9 8 4 38 38 H 1.09004 * 109.46826 * 333.65514 * 9 8 4 39 39 H 0.97000 * 120.00547 * 0.02562 * 12 10 2 40 40 H 1.08998 * 109.46988 * 59.99773 * 13 12 10 41 41 H 1.08998 * 109.46694 * 300.00117 * 13 12 10 42 42 H 1.07999 * 119.96327 * 359.97438 * 15 14 13 43 43 H 1.08002 * 120.03146 * 179.97438 * 16 15 14 44 44 H 0.97001 * 120.00646 * 179.97438 * 22 21 19 45 45 H 1.08008 * 120.02959 * 179.72303 * 27 17 16 46 46 H 1.08006 * 119.96777 * 180.27170 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3216 1.7772 -1.4132 5 7 1.4221 2.4739 -2.0526 6 6 1.8725 2.7528 -3.2849 7 6 3.0941 2.2015 -3.4166 8 7 3.3794 1.5824 -2.2297 9 6 4.6039 0.8465 -1.9054 10 6 2.1390 -1.1672 0.0005 11 8 3.3548 -1.1671 0.0010 12 7 1.4651 -2.3343 0.0005 13 6 2.1976 -3.6031 0.0005 14 6 1.2184 -4.7485 -0.0001 15 6 0.7704 -5.2728 -1.1989 16 6 -0.1274 -6.3221 -1.2028 17 6 -0.5800 -6.8513 -0.0012 18 8 -1.4630 -7.8824 -0.0017 19 6 -1.7750 -8.4205 -1.1980 20 1 -1.3910 -7.9785 -2.1055 21 6 -2.5888 -9.5411 -1.2630 22 7 -3.0561 -10.0798 -0.1575 23 14 -3.0217 -10.2862 -2.9204 24 1 -2.3744 -9.4997 -4.0009 25 1 -2.5393 -11.6896 -2.9734 26 1 -4.4950 -10.2619 -3.1045 27 6 -0.1322 -6.3192 1.2010 28 6 0.7700 -5.2738 1.1982 29 1 -0.3633 0.0231 1.0274 30 1 -0.3633 0.8781 -0.5338 31 1 -0.3633 -0.9014 -0.4937 32 1 1.6584 1.9995 0.6031 33 1 3.1917 1.1143 0.4192 34 1 1.3459 3.3170 -4.0403 35 1 3.7267 2.2398 -4.2912 36 1 4.5033 -0.1883 -2.2327 37 1 5.4505 1.3077 -2.4140 38 1 4.7690 0.8725 -0.8283 39 1 0.4951 -2.3344 -0.0002 40 1 2.8243 -3.6608 0.8905 41 1 2.8243 -3.6607 -0.8895 42 1 1.1224 -4.8606 -2.1330 43 1 -0.4772 -6.7308 -2.1393 44 1 -3.6258 -10.8636 -0.2030 45 1 -0.4858 -6.7257 2.1371 46 1 1.1220 -4.8625 2.1328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775431841.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:54 Heat of formation + Delta-G solvation = 25.296591 kcal Electronic energy + Delta-G solvation = -28915.649787 eV Core-core repulsion = 24807.096995 eV Total energy + Delta-G solvation = -4108.552791 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.04317 -41.24026 -40.70705 -38.57356 -36.68941 -35.73223 -34.88822 -34.28711 -32.12362 -31.82317 -30.87244 -28.45383 -27.80141 -27.68695 -26.95117 -25.52172 -23.65180 -22.35857 -22.20289 -21.49720 -20.61508 -19.88059 -19.21480 -18.76457 -18.07893 -17.63026 -16.88251 -16.57583 -16.41041 -16.24969 -16.01707 -15.58533 -15.48087 -15.29464 -15.10531 -14.99702 -14.64078 -14.40277 -14.35425 -14.11494 -13.80814 -13.74937 -13.62961 -13.41534 -13.31964 -13.21652 -13.04816 -12.78953 -12.55578 -12.35069 -12.23460 -12.09578 -11.31311 -11.20882 -10.99858 -10.82325 -10.55311 -10.19767 -9.82251 -9.67711 -9.37578 -9.02289 -8.49235 -6.17285 0.51024 0.57186 0.96453 1.35352 1.42344 1.53040 1.72290 1.91459 2.13443 2.16137 2.27524 2.76965 3.03806 3.22936 3.48338 3.48683 3.84131 3.88265 3.97890 4.02766 4.16501 4.19374 4.27312 4.33541 4.46548 4.48247 4.56113 4.60419 4.67878 4.72944 4.75545 4.80568 4.81497 4.90926 5.03833 5.13935 5.25846 5.32223 5.39247 5.48144 5.52721 5.68478 5.74974 5.82700 5.88912 6.00864 6.15643 6.21191 6.90727 6.95818 7.11806 7.51043 7.74966 8.73733 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.001981 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.349512 B =14128.439541 C =14733.853534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.624 5.624 3 C 0.219 3.781 4 C 0.168 3.832 5 N -0.510 5.510 6 C -0.055 4.055 7 C -0.053 4.053 8 N -0.451 5.451 9 C 0.079 3.921 10 C 0.702 3.298 11 O -0.618 6.618 12 N -0.732 5.732 13 C 0.206 3.794 14 C -0.182 4.182 15 C -0.046 4.046 16 C -0.244 4.244 17 C 0.123 3.877 18 O -0.228 6.228 19 C -0.413 4.413 20 H 0.103 0.897 21 C -0.022 4.022 22 N -0.918 5.918 23 Si 1.018 2.982 24 H -0.252 1.252 25 H -0.269 1.269 26 H -0.269 1.269 27 C -0.204 4.204 28 C -0.041 4.041 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.184 0.816 35 H 0.203 0.797 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.404 0.596 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.135 0.865 43 H 0.119 0.881 44 H 0.273 0.727 45 H 0.116 0.884 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.081 24.404 -3.474 27.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.361 5.361 3 C 0.093 3.907 4 C -0.095 4.095 5 N -0.230 5.230 6 C -0.204 4.204 7 C -0.187 4.187 8 N -0.133 5.133 9 C -0.062 4.062 10 C 0.403 3.597 11 O -0.499 6.499 12 N -0.389 5.389 13 C 0.082 3.918 14 C -0.184 4.184 15 C -0.065 4.065 16 C -0.263 4.263 17 C 0.072 3.928 18 O -0.134 6.134 19 C -0.489 4.489 20 H 0.120 0.880 21 C -0.220 4.220 22 N -0.556 5.556 23 Si 0.837 3.163 24 H -0.175 1.175 25 H -0.194 1.194 26 H -0.194 1.194 27 C -0.223 4.223 28 C -0.059 4.059 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.121 0.879 34 H 0.202 0.798 35 H 0.219 0.781 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.241 0.759 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.153 0.847 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.134 0.866 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 13.098 24.249 -2.846 27.707 hybrid contribution -0.318 -1.077 -1.123 1.588 sum 12.780 23.172 -3.969 26.759 Atomic orbital electron populations 1.21883 0.77847 1.03595 1.03148 1.47023 1.07561 1.03863 1.77616 1.19610 0.99630 0.84244 0.87172 1.24007 0.85645 1.02466 0.97410 1.70163 1.29024 1.16708 1.07096 1.22713 0.95459 1.06517 0.95681 1.23272 1.00850 1.03094 0.91495 1.45533 1.16346 1.39557 1.11848 1.22138 0.83925 0.96192 1.03980 1.16024 0.85141 0.80899 0.77612 1.90833 1.12384 1.86788 1.59925 1.45467 1.10485 1.04049 1.78890 1.19710 0.91330 0.78375 1.02338 1.19511 1.04562 1.01440 0.92842 1.20912 0.93801 0.93423 0.98330 1.21227 1.05246 1.02494 0.97370 1.19998 0.89013 0.88433 0.95367 1.83948 1.53373 1.42564 1.33559 1.21853 1.31776 1.11650 0.83573 0.87992 1.26568 0.95868 0.95891 1.03634 1.70178 1.33273 1.22386 1.29760 0.84539 0.78556 0.78167 0.75034 1.17492 1.19437 1.19352 1.20460 1.04274 1.02211 0.95365 1.20887 0.93473 0.93067 0.98516 0.90410 0.90126 0.91466 0.85943 0.87915 0.79849 0.78055 0.91538 0.87524 0.88995 0.75864 0.90708 0.91602 0.84738 0.86359 0.91786 0.86584 0.83329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.25 127.77 1.31 2.47 16 2 N -0.62 -11.70 2.86 -869.30 -2.49 -14.19 16 3 C 0.22 3.75 5.84 85.63 0.50 4.25 16 4 C 0.17 3.49 7.48 138.13 1.03 4.52 16 5 N -0.51 -11.85 11.25 -188.13 -2.12 -13.97 16 6 C -0.06 -1.08 11.87 83.52 0.99 -0.09 16 7 C -0.05 -0.87 11.58 83.09 0.96 0.10 16 8 N -0.45 -8.27 3.15 -537.61 -1.69 -9.97 16 9 C 0.08 1.12 10.20 127.77 1.30 2.43 16 10 C 0.70 16.17 8.28 179.05 1.48 17.65 16 11 O -0.62 -16.73 14.62 -3.98 -0.06 -16.79 16 12 N -0.73 -15.89 5.42 -482.30 -2.61 -18.50 16 13 C 0.21 4.81 5.80 85.63 0.50 5.31 16 14 C -0.18 -5.13 5.25 -19.83 -0.10 -5.23 16 15 C -0.05 -1.47 9.69 22.25 0.22 -1.25 16 16 C -0.24 -10.01 9.17 22.39 0.21 -9.81 16 17 C 0.12 5.80 6.65 22.58 0.15 5.95 16 18 O -0.23 -13.29 9.76 -22.76 -0.22 -13.51 16 19 C -0.41 -23.36 9.49 67.92 0.64 -22.72 16 20 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16 21 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 22 N -0.92 -55.28 13.67 21.61 0.30 -54.99 16 23 Si 1.02 41.98 29.55 68.60 2.03 44.01 16 24 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 25 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 26 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 27 C -0.20 -8.05 9.99 22.39 0.22 -7.83 16 28 C -0.04 -1.24 9.69 22.25 0.22 -1.02 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 31 H 0.07 1.01 6.30 -2.38 -0.02 1.00 16 32 H 0.12 1.62 8.12 -2.38 -0.02 1.60 16 33 H 0.10 1.73 5.96 -2.39 -0.01 1.71 16 34 H 0.18 2.69 8.06 -2.91 -0.02 2.66 16 35 H 0.20 1.85 8.06 -2.91 -0.02 1.82 16 36 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 37 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 1.35 6.53 -2.38 -0.02 1.33 16 39 H 0.40 8.04 6.17 -92.71 -0.57 7.46 16 40 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 41 H 0.07 1.58 8.08 -2.39 -0.02 1.56 16 42 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 43 H 0.12 5.01 5.64 -2.91 -0.02 4.99 16 44 H 0.27 15.03 8.31 -92.71 -0.77 14.25 16 45 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 46 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -75.36 389.45 3.68 -71.68 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: 0.45 Total: 32.24 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 10.10 Total: -6.01 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -8.61 Total: -111.61 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.28 Total: -30.30 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -75.36 3.68 -71.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775431841.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.979 kcal (2) G-P(sol) polarization free energy of solvation -75.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds