Wall clock time and date at job start Sat Apr 11 2020 07:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34949 * 125.97415 * 2 1 4 4 C 1.35257 * 107.86363 * 179.73220 * 3 2 1 5 5 C 1.40416 * 107.86216 * 0.43045 * 4 3 2 6 6 N 1.39986 * 125.97620 * 179.82730 * 5 4 3 7 7 C 1.46495 * 119.99982 * 359.71924 * 6 5 4 8 8 C 1.53004 * 109.47156 * 180.02562 * 7 6 5 9 9 N 1.46495 * 109.47156 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00172 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99798 * 0.02562 * 10 9 8 12 12 C 1.50705 * 120.00246 * 179.97438 * 10 9 8 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47448 * 89.99502 * 22 20 18 24 24 H 1.48501 * 109.47175 * 209.99712 * 22 20 18 25 25 H 1.48506 * 109.47415 * 329.99678 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 N 1.31229 * 108.04892 * 359.56825 * 5 4 3 29 29 H 1.09004 * 109.47031 * 269.97011 * 1 2 3 30 30 H 1.08997 * 109.47562 * 29.96573 * 1 2 3 31 31 H 1.09002 * 109.47421 * 149.97254 * 1 2 3 32 32 H 1.08006 * 126.06860 * 0.02988 * 3 2 1 33 33 H 1.08001 * 126.06637 * 180.29401 * 4 3 2 34 34 H 0.97005 * 119.99795 * 179.72176 * 6 5 4 35 35 H 1.08998 * 109.47323 * 59.99631 * 7 6 5 36 36 H 1.09005 * 109.46890 * 299.99851 * 7 6 5 37 37 H 1.08998 * 109.47672 * 59.99396 * 8 7 6 38 38 H 1.09005 * 109.46733 * 299.99498 * 8 7 6 39 39 H 0.97005 * 120.00223 * 359.97438 * 9 8 7 40 40 H 1.08998 * 109.46621 * 60.00483 * 12 10 9 41 41 H 1.08996 * 109.47266 * 300.00146 * 12 10 9 42 42 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2577 1.0921 0.0000 4 6 3.5432 0.6717 0.0060 5 6 3.5372 -0.7325 -0.0002 6 7 4.6665 -1.5597 -0.0003 7 6 6.0071 -0.9690 0.0002 8 6 7.0554 -2.0835 -0.0007 9 7 8.3960 -1.4929 0.0004 10 6 9.4833 -2.2893 0.0004 11 8 9.3519 -3.4950 -0.0010 12 6 10.8625 -1.6817 0.0010 13 6 11.8949 -2.7794 0.0002 14 6 12.3679 -3.2810 -1.1986 15 6 13.3144 -4.2866 -1.2028 16 6 13.7910 -4.7945 -0.0012 17 8 14.7219 -5.7826 -0.0020 18 6 15.2265 -6.1472 -1.1979 19 1 14.8296 -5.7169 -2.1054 20 6 16.2551 -7.0749 -1.2626 21 7 16.7389 -7.5989 -0.1572 22 14 16.9546 -7.5796 -2.9195 23 1 18.0789 -6.6779 -3.2776 24 1 17.4470 -8.9785 -2.8435 25 1 15.8942 -7.4836 -3.9547 26 6 13.3096 -4.2930 1.2010 27 6 12.3672 -3.2835 1.1984 28 7 2.2877 -1.1337 -0.0002 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5133 31 1 -0.3634 -0.8897 -0.5143 32 1 1.9247 2.1196 0.0005 33 1 4.4189 1.3038 0.0121 34 1 4.5613 -2.5240 -0.0008 35 1 6.1323 -0.3527 0.8904 36 1 6.1326 -0.3519 -0.8895 37 1 6.9301 -2.6996 -0.8911 38 1 6.9301 -2.7009 0.8888 39 1 8.5012 -0.5285 0.0012 40 1 10.9875 -1.0654 0.8913 41 1 10.9881 -1.0646 -0.8886 42 1 11.9972 -2.8854 -2.1327 43 1 13.6836 -4.6776 -2.1393 44 1 17.4581 -8.2481 -0.2025 45 1 13.6750 -4.6890 2.1370 46 1 11.9956 -2.8900 2.1330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816631457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:13 Heat of formation + Delta-G solvation = 22.810771 kcal Electronic energy + Delta-G solvation = -27227.948943 eV Core-core repulsion = 23119.288358 eV Total energy + Delta-G solvation = -4108.660585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.90001 -41.06739 -40.36754 -38.28928 -37.50070 -35.44791 -34.38828 -33.30095 -32.70506 -31.75543 -31.04487 -29.69171 -27.97544 -26.98058 -26.41574 -23.92334 -23.61596 -22.55083 -21.77666 -21.48436 -20.93812 -19.82985 -18.84995 -18.19027 -17.97666 -17.14596 -16.90484 -16.53167 -16.44928 -16.29495 -16.15100 -15.88150 -15.50476 -15.41783 -15.30961 -14.92141 -14.63208 -14.44134 -14.38288 -14.13270 -13.84194 -13.73764 -13.58210 -13.16220 -12.98743 -12.95544 -12.73050 -12.65625 -12.44143 -12.25864 -12.23341 -12.10783 -11.41341 -11.16656 -11.12642 -10.94683 -10.74005 -10.08132 -9.74077 -9.63126 -8.88196 -8.60189 -8.46658 -6.14898 0.63717 0.69063 1.12899 1.34266 1.43612 1.50163 1.52201 1.76223 2.12167 2.18198 2.18625 2.79454 2.94339 3.21436 3.53707 3.72057 3.89726 3.90823 4.07564 4.11348 4.15712 4.20530 4.28473 4.45026 4.51132 4.53701 4.62228 4.71303 4.76319 4.76749 4.79569 4.83229 4.89804 4.92765 4.98314 5.11928 5.16131 5.32970 5.42443 5.49055 5.58869 5.73558 5.80361 6.03898 6.15076 6.25863 6.33220 6.61531 6.67339 6.97899 7.13478 7.39297 7.79684 8.76933 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.030242 B = 0.001351 C = 0.001329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.655154 B =20724.206175 C =21059.320092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.388 5.388 3 C 0.085 3.915 4 C -0.328 4.328 5 C 0.323 3.677 6 N -0.725 5.725 7 C 0.145 3.855 8 C 0.114 3.886 9 N -0.713 5.713 10 C 0.511 3.489 11 O -0.582 6.582 12 C -0.076 4.076 13 C -0.147 4.147 14 C -0.060 4.060 15 C -0.245 4.245 16 C 0.111 3.889 17 O -0.235 6.235 18 C -0.415 4.415 19 H 0.100 0.900 20 C -0.023 4.023 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.260 1.260 24 H -0.271 1.271 25 H -0.255 1.255 26 C -0.208 4.208 27 C -0.058 4.058 28 N -0.406 5.406 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.215 0.785 33 H 0.162 0.838 34 H 0.402 0.598 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.422 0.578 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.139 0.861 43 H 0.116 0.884 44 H 0.273 0.727 45 H 0.111 0.889 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.921 26.267 -1.285 39.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.170 5.170 3 C -0.062 4.062 4 C -0.360 4.360 5 C 0.065 3.935 6 N -0.367 5.367 7 C 0.020 3.980 8 C -0.011 4.011 9 N -0.368 5.368 10 C 0.299 3.701 11 O -0.461 6.461 12 C -0.115 4.115 13 C -0.148 4.148 14 C -0.078 4.078 15 C -0.265 4.265 16 C 0.061 3.939 17 O -0.142 6.142 18 C -0.491 4.491 19 H 0.117 0.883 20 C -0.220 4.220 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.185 1.185 24 H -0.195 1.195 25 H -0.179 1.179 26 C -0.227 4.227 27 C -0.076 4.076 28 N -0.239 5.239 29 H 0.098 0.902 30 H 0.136 0.864 31 H 0.098 0.902 32 H 0.231 0.769 33 H 0.180 0.820 34 H 0.236 0.764 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.260 0.740 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.157 0.843 43 H 0.134 0.866 44 H 0.082 0.918 45 H 0.129 0.871 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -30.602 24.321 -1.036 39.103 hybrid contribution 1.102 -0.475 -0.431 1.275 sum -29.500 23.846 -1.468 37.961 Atomic orbital electron populations 1.22079 0.72348 1.05561 1.04115 1.48345 1.07308 1.02808 1.58552 1.23095 0.90180 0.94817 0.98117 1.21391 0.98840 0.92295 1.23474 1.19506 0.87224 0.91138 0.95644 1.43473 1.01099 1.07208 1.84915 1.21246 0.78972 0.94602 1.03200 1.21208 0.81822 0.96037 1.02011 1.45570 1.04235 1.11102 1.75873 1.21221 0.87519 0.86674 0.74679 1.90773 1.87601 1.17334 1.50380 1.20530 0.86791 0.96191 1.07984 1.19306 1.01232 1.01875 0.92363 1.20952 0.94041 0.94139 0.98682 1.21234 1.04530 1.03537 0.97152 1.19959 0.90027 0.88507 0.95442 1.83934 1.49990 1.46736 1.33547 1.21831 1.18123 1.25545 0.83633 0.88266 1.26605 0.95846 0.95748 1.03827 1.70189 1.26856 1.29081 1.29888 0.84581 0.78777 0.78037 0.74751 1.18487 1.19523 1.17854 1.20449 1.04389 1.02681 0.95194 1.20901 0.93923 0.93912 0.98840 1.77341 1.00539 1.09357 1.36706 0.90183 0.86370 0.90210 0.76886 0.81994 0.76361 0.90171 0.90215 0.92357 0.92300 0.73959 0.84763 0.85008 0.84287 0.86589 0.91846 0.87108 0.83444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.56 11.47 127.77 1.46 2.02 16 2 N -0.39 -5.56 4.01 -369.61 -1.48 -7.05 16 3 C 0.09 0.86 11.48 83.53 0.96 1.82 16 4 C -0.33 -4.41 10.11 22.11 0.22 -4.19 16 5 C 0.32 6.11 8.16 133.38 1.09 7.19 16 6 N -0.72 -11.46 5.77 -343.93 -1.98 -13.44 16 7 C 0.14 1.46 5.72 86.38 0.49 1.95 16 8 C 0.11 1.68 5.79 86.38 0.50 2.18 16 9 N -0.71 -9.40 5.56 -463.05 -2.57 -11.97 16 10 C 0.51 11.53 7.82 87.66 0.69 12.22 16 11 O -0.58 -20.67 16.03 -3.05 -0.05 -20.72 16 12 C -0.08 -1.38 5.83 29.10 0.17 -1.21 16 13 C -0.15 -4.62 4.38 -19.84 -0.09 -4.70 16 14 C -0.06 -2.18 9.69 22.25 0.22 -1.96 16 15 C -0.25 -11.40 9.17 22.39 0.21 -11.19 16 16 C 0.11 5.87 6.65 22.58 0.15 6.02 16 17 O -0.24 -14.91 9.76 -22.72 -0.22 -15.14 16 18 C -0.42 -25.28 9.49 67.92 0.64 -24.64 16 19 H 0.10 5.57 5.20 -2.91 -0.02 5.56 16 20 C -0.02 -1.36 5.49 84.84 0.47 -0.89 16 21 N -0.92 -58.33 13.67 21.62 0.30 -58.04 16 22 Si 1.02 44.30 29.55 68.60 2.03 46.32 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.25 -10.36 7.11 99.48 0.71 -9.66 16 26 C -0.21 -9.47 9.99 22.39 0.22 -9.24 16 27 C -0.06 -2.04 9.69 22.25 0.22 -1.82 16 28 N -0.41 -8.91 12.59 -54.55 -0.69 -9.59 16 29 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.12 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.21 0.09 8.06 -2.91 -0.02 0.07 16 33 H 0.16 1.39 7.90 -2.91 -0.02 1.37 16 34 H 0.40 6.69 8.60 -92.70 -0.80 5.89 16 35 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.42 1.94 8.47 -92.70 -0.79 1.15 16 40 H 0.13 1.51 8.08 -2.39 -0.02 1.49 16 41 H 0.13 1.54 8.08 -2.39 -0.02 1.52 16 42 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 43 H 0.12 5.48 5.64 -2.91 -0.02 5.46 16 44 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 45 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 46 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -94.22 398.70 2.39 -91.83 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -0.56 Total: 24.23 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 7.62 Total: -26.43 kcal Atomic # 7 Polarization: -93.66 SS G_CDS: -6.43 Total: -100.09 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -0.27 Total: -35.86 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -94.22 2.39 -91.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816631457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.639 kcal (2) G-P(sol) polarization free energy of solvation -94.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds