Wall clock time and date at job start Sat Apr 11 2020 07:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 111.00067 * 2 1 4 4 C 1.46897 * 110.99867 * 123.95101 * 2 1 3 5 5 C 1.53008 * 109.47120 * 66.04861 * 4 2 1 6 6 N 1.46496 * 109.46958 * 179.97438 * 5 4 2 7 7 C 1.35037 * 124.88271 * 125.02658 * 6 5 4 8 8 C 1.35360 * 107.23387 * 179.97438 * 7 6 5 9 9 C 1.41516 * 105.50211 * 359.97438 * 8 7 6 10 10 C 1.47683 * 126.52006 * 179.97438 * 9 8 7 11 11 O 1.21575 * 119.99761 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99775 * 180.02562 * 10 9 8 13 13 C 1.39850 * 119.99869 * 174.78871 * 12 10 9 14 14 C 1.38979 * 120.03658 * 326.13766 * 13 12 10 15 15 C 1.38159 * 120.06443 * 179.72363 * 14 13 12 16 16 C 1.38170 * 120.13909 * 0.54802 * 15 14 13 17 17 C 1.38910 * 120.07207 * 359.72852 * 16 15 14 18 18 O 1.35753 * 120.02801 * 179.97438 * 17 16 15 19 19 C 1.34834 * 116.99716 * 185.92063 * 18 17 16 20 20 H 1.08005 * 120.00174 * 5.41289 * 19 18 17 21 21 C 1.38653 * 120.00176 * 185.40157 * 19 18 17 22 22 N 1.31551 * 120.00390 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99734 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.46893 * 89.99742 * 23 21 19 25 25 H 1.48493 * 109.47325 * 209.99839 * 23 21 19 26 26 H 1.48504 * 109.47364 * 330.00003 * 23 21 19 27 27 C 1.38729 * 120.03668 * 146.41282 * 13 12 10 28 28 N 1.28471 * 124.88540 * 305.01881 * 6 5 4 29 29 H 1.08998 * 109.47304 * 296.04526 * 1 2 3 30 30 H 1.09000 * 109.46841 * 56.04695 * 1 2 3 31 31 H 1.09003 * 109.47190 * 176.04671 * 1 2 3 32 32 H 1.09002 * 109.47384 * 183.95799 * 3 2 1 33 33 H 1.09000 * 109.46999 * 303.95410 * 3 2 1 34 34 H 1.09001 * 109.47435 * 63.95189 * 3 2 1 35 35 H 1.08996 * 109.47751 * 306.04772 * 4 2 1 36 36 H 1.08998 * 109.47179 * 186.04701 * 4 2 1 37 37 H 1.08996 * 109.46882 * 59.99378 * 5 4 2 38 38 H 1.08997 * 109.46496 * 299.99733 * 5 4 2 39 39 H 1.08001 * 126.38753 * 359.97438 * 7 6 5 40 40 H 1.07997 * 127.25182 * 179.97438 * 8 7 6 41 41 H 0.97003 * 120.00114 * 354.78856 * 12 10 9 42 42 H 1.08001 * 119.96977 * 359.97438 * 14 13 12 43 43 H 1.07997 * 119.92853 * 180.25693 * 15 14 13 44 44 H 1.07994 * 119.96209 * 179.74375 * 16 15 14 45 45 H 0.97007 * 120.00275 * 179.97438 * 22 21 19 46 46 H 1.07991 * 120.07486 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9704 6 7 2.1570 -3.0065 2.1046 7 6 1.4192 -3.8034 2.9072 8 6 2.2580 -4.3304 3.8297 9 6 3.5346 -3.8003 3.5267 10 6 4.7936 -4.0735 4.2488 11 8 4.7946 -4.8213 5.2073 12 7 5.9414 -3.4938 3.8450 13 6 7.1115 -3.6649 4.5916 14 6 7.0443 -3.7708 5.9757 15 6 8.1993 -3.9455 6.7134 16 6 9.4254 -4.0042 6.0791 17 6 9.4998 -3.8933 4.6964 18 8 10.7049 -3.9506 4.0742 19 6 10.7203 -3.7141 2.7468 20 1 9.8162 -3.4060 2.2427 21 6 11.8968 -3.8661 2.0291 22 7 11.9119 -3.6348 0.7341 23 14 13.4605 -4.3993 2.9009 24 1 13.5531 -5.8814 2.8888 25 1 14.6377 -3.8240 2.2022 26 1 13.4336 -3.9165 4.3051 27 6 8.3411 -3.7234 3.9519 28 7 3.3860 -3.0148 2.4786 29 1 -0.3634 0.4512 0.9233 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3634 -1.0252 -0.0709 32 1 3.0828 1.3432 -0.0709 33 1 1.5898 1.9162 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 1.5611 -0.3872 2.0628 36 1 3.0797 -0.6610 1.1757 37 1 2.0658 -2.6213 0.0452 38 1 0.5472 -2.3474 0.9324 39 1 0.3577 -3.9862 2.8280 40 1 2.0060 -5.0119 4.6287 41 1 5.9559 -2.9579 3.0366 42 1 6.0879 -3.7205 6.4749 43 1 8.1442 -4.0317 7.7885 44 1 10.3268 -4.1368 6.6589 45 1 12.7352 -3.7408 0.2320 46 1 8.3965 -3.6373 2.8769 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847350511.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:18 Heat of formation + Delta-G solvation = 65.501191 kcal Electronic energy + Delta-G solvation = -28611.338397 eV Core-core repulsion = 24504.529008 eV Total energy + Delta-G solvation = -4106.809389 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.87982 -39.99255 -38.67997 -38.18750 -36.50227 -34.26111 -33.92943 -32.31951 -31.01864 -29.91890 -29.29072 -28.58890 -28.14101 -25.65427 -25.12772 -23.57210 -21.91364 -21.73827 -21.66521 -21.10429 -19.65524 -18.36930 -17.76687 -17.53727 -16.86166 -16.48427 -15.99513 -15.57687 -15.53132 -15.20119 -14.96998 -14.80459 -14.31305 -14.23546 -13.97861 -13.77403 -13.66411 -13.48446 -13.33375 -12.98750 -12.95099 -12.55894 -12.29822 -12.21764 -12.16130 -12.10203 -11.66364 -11.63288 -11.21204 -11.03181 -10.89771 -10.74612 -10.27459 -9.98848 -9.62799 -9.47992 -9.45324 -9.27182 -8.99293 -8.81880 -7.75227 -7.25234 -6.38940 -4.05916 1.37582 1.86493 2.07575 2.18666 2.35630 3.23631 3.26157 3.29580 3.43457 3.45174 3.48692 3.94708 4.26792 4.31548 4.46528 4.51284 4.56794 4.60214 4.71955 4.80444 4.91007 4.94313 5.04908 5.06707 5.12121 5.24343 5.30304 5.38504 5.45407 5.46225 5.56471 5.68172 5.96226 6.02324 6.15718 6.23189 6.24686 6.32810 6.37741 6.51099 6.53579 6.92196 6.98297 7.22484 7.24331 7.54887 7.66506 7.79827 7.84892 8.05626 8.33347 8.96673 9.59111 10.68825 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010685 B = 0.002391 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.856894 B =11709.371615 C =13565.203299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.544 5.544 3 C 0.025 3.975 4 C 0.041 3.959 5 C 0.124 3.876 6 N -0.281 5.281 7 C -0.020 4.020 8 C -0.176 4.176 9 C -0.013 4.013 10 C 0.603 3.397 11 O -0.513 6.513 12 N -0.656 5.656 13 C 0.181 3.819 14 C -0.198 4.198 15 C -0.064 4.064 16 C -0.200 4.200 17 C 0.174 3.826 18 O -0.216 6.216 19 C -0.389 4.389 20 H 0.105 0.895 21 C 0.063 3.937 22 N -0.881 5.881 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.259 1.259 27 C -0.241 4.241 28 N -0.256 5.256 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.043 0.957 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.182 0.818 40 H 0.164 0.836 41 H 0.414 0.586 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.279 0.721 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.586 6.433 0.075 26.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.268 5.268 3 C -0.123 4.123 4 C -0.087 4.087 5 C 0.003 3.997 6 N -0.070 5.070 7 C -0.162 4.162 8 C -0.204 4.204 9 C -0.173 4.173 10 C 0.388 3.612 11 O -0.386 6.386 12 N -0.300 5.300 13 C 0.088 3.912 14 C -0.219 4.219 15 C -0.083 4.083 16 C -0.220 4.220 17 C 0.121 3.879 18 O -0.121 6.121 19 C -0.464 4.464 20 H 0.122 0.878 21 C -0.140 4.140 22 N -0.519 5.519 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.263 4.263 28 N -0.092 5.092 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.199 0.801 40 H 0.181 0.819 41 H 0.250 0.750 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.089 0.911 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -24.571 6.415 -0.635 25.402 hybrid contribution -0.267 -0.062 0.748 0.796 sum -24.838 6.353 0.112 25.638 Atomic orbital electron populations 1.22532 0.87249 1.02409 1.01087 1.61886 1.08078 1.14749 1.42100 1.22408 1.01437 0.87677 1.00811 1.22369 1.02617 0.91591 0.92172 1.21989 0.99752 0.91211 0.86728 1.45473 1.04573 1.33313 1.23603 1.22858 0.99483 0.99002 0.94898 1.21780 0.90913 1.05108 1.02557 1.21911 0.95607 1.02319 0.97489 1.16895 0.81460 0.79695 0.83112 1.90810 1.85385 1.35263 1.27167 1.43315 1.07413 1.50962 1.28298 1.17411 0.84418 0.98863 0.90488 1.20620 0.98766 1.10745 0.91751 1.20521 0.91285 0.97805 0.98684 1.20239 0.98069 1.11973 0.91694 1.18805 0.84837 0.92845 0.91398 1.83615 1.25424 1.78935 1.24117 1.20734 0.99658 1.46541 0.79505 0.87773 1.24457 0.98699 0.96043 0.94782 1.69646 1.29094 1.47315 1.05831 0.86185 0.80978 0.79234 0.80541 1.19915 1.20836 1.18271 1.20944 0.90722 1.13574 1.01053 1.73515 1.01189 1.20470 1.14018 0.95293 0.90814 0.91193 0.90664 0.90842 0.95331 0.93885 0.88545 0.87696 0.87909 0.80119 0.81873 0.74995 0.86101 0.86378 0.86359 0.91103 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.32 60.07 0.56 0.63 16 2 N -0.54 -3.53 5.02 -251.26 -1.26 -4.79 16 3 C 0.02 0.15 9.57 60.06 0.57 0.72 16 4 C 0.04 0.29 5.06 -3.82 -0.02 0.27 16 5 C 0.12 0.78 6.32 -4.04 -0.03 0.76 16 6 N -0.28 -2.66 3.41 -61.33 -0.21 -2.87 16 7 C -0.02 -0.17 11.40 -17.17 -0.20 -0.36 16 8 C -0.18 -2.00 10.81 -39.36 -0.43 -2.42 16 9 C -0.01 -0.18 7.13 -82.77 -0.59 -0.77 16 10 C 0.60 10.29 7.56 -12.40 -0.09 10.20 16 11 O -0.51 -10.00 14.64 5.30 0.08 -9.92 16 12 N -0.66 -11.35 5.33 -10.78 -0.06 -11.41 16 13 C 0.18 3.62 6.26 -83.74 -0.52 3.10 16 14 C -0.20 -3.82 8.65 -39.34 -0.34 -4.16 16 15 C -0.06 -1.18 10.03 -39.64 -0.40 -1.57 16 16 C -0.20 -4.10 9.99 -39.36 -0.39 -4.49 16 17 C 0.17 4.11 6.64 -39.14 -0.26 3.85 16 18 O -0.22 -5.75 8.58 0.03 0.00 -5.75 16 19 C -0.39 -11.02 9.90 30.89 0.31 -10.71 16 20 H 0.10 3.01 5.53 -52.48 -0.29 2.72 16 21 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 22 N -0.88 -25.56 13.96 55.48 0.77 -24.78 16 23 Si 0.91 21.87 28.62 -169.99 -4.86 17.00 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 27 C -0.24 -5.39 9.04 -39.20 -0.35 -5.74 16 28 N -0.26 -3.25 11.37 33.42 0.38 -2.87 16 29 H 0.03 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.07 0.29 8.12 -51.93 -0.42 -0.14 16 31 H 0.07 0.22 6.47 -51.93 -0.34 -0.11 16 32 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 33 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 34 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16 35 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 36 H 0.10 0.85 8.00 -51.93 -0.42 0.44 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.36 6.45 -51.93 -0.34 0.02 16 39 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.41 6.42 8.55 -40.82 -0.35 6.07 16 42 H 0.12 2.27 6.45 -52.49 -0.34 1.93 16 43 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 45 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.14 3.15 5.71 -52.49 -0.30 2.85 16 LS Contribution 390.05 15.07 5.88 5.88 Total: -1.00 -33.70 390.05 -7.70 -41.40 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.15 Total: 7.13 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -2.28 Total: -9.02 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.37 Total: -46.72 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.08 Total: -15.68 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.86 Total: 17.00 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.70 -7.70 -41.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847350511.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.900 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds