Wall clock time and date at job start Sat Apr 11 2020 07:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 111.00067 * 2 1 4 4 C 1.46897 * 110.99867 * 123.95101 * 2 1 3 5 5 C 1.53008 * 109.47120 * 66.04861 * 4 2 1 6 6 N 1.46496 * 109.46958 * 179.97438 * 5 4 2 7 7 C 1.35037 * 124.88271 * 125.02658 * 6 5 4 8 8 C 1.35360 * 107.23387 * 179.97438 * 7 6 5 9 9 C 1.41516 * 105.50211 * 359.97438 * 8 7 6 10 10 C 1.47683 * 126.52006 * 179.97438 * 9 8 7 11 11 O 1.21575 * 119.99761 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99775 * 180.02562 * 10 9 8 13 13 C 1.39850 * 119.99869 * 174.78871 * 12 10 9 14 14 C 1.38979 * 120.03658 * 326.13766 * 13 12 10 15 15 C 1.38159 * 120.06443 * 179.72363 * 14 13 12 16 16 C 1.38170 * 120.13909 * 0.54802 * 15 14 13 17 17 C 1.38910 * 120.07207 * 359.72852 * 16 15 14 18 18 O 1.35753 * 120.02801 * 179.97438 * 17 16 15 19 19 C 1.34834 * 116.99716 * 185.92063 * 18 17 16 20 20 H 1.08005 * 120.00174 * 5.41289 * 19 18 17 21 21 C 1.38653 * 120.00176 * 185.40157 * 19 18 17 22 22 N 1.31551 * 120.00390 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99734 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.46893 * 89.99742 * 23 21 19 25 25 H 1.48493 * 109.47325 * 209.99839 * 23 21 19 26 26 H 1.48504 * 109.47364 * 330.00003 * 23 21 19 27 27 C 1.38729 * 120.03668 * 146.41282 * 13 12 10 28 28 N 1.28471 * 124.88540 * 305.01881 * 6 5 4 29 29 H 1.08998 * 109.47304 * 296.04526 * 1 2 3 30 30 H 1.09000 * 109.46841 * 56.04695 * 1 2 3 31 31 H 1.09003 * 109.47190 * 176.04671 * 1 2 3 32 32 H 1.09002 * 109.47384 * 183.95799 * 3 2 1 33 33 H 1.09000 * 109.46999 * 303.95410 * 3 2 1 34 34 H 1.09001 * 109.47435 * 63.95189 * 3 2 1 35 35 H 1.08996 * 109.47751 * 306.04772 * 4 2 1 36 36 H 1.08998 * 109.47179 * 186.04701 * 4 2 1 37 37 H 1.08996 * 109.46882 * 59.99378 * 5 4 2 38 38 H 1.08997 * 109.46496 * 299.99733 * 5 4 2 39 39 H 1.08001 * 126.38753 * 359.97438 * 7 6 5 40 40 H 1.07997 * 127.25182 * 179.97438 * 8 7 6 41 41 H 0.97003 * 120.00114 * 354.78856 * 12 10 9 42 42 H 1.08001 * 119.96977 * 359.97438 * 14 13 12 43 43 H 1.07997 * 119.92853 * 180.25693 * 15 14 13 44 44 H 1.07994 * 119.96209 * 179.74375 * 16 15 14 45 45 H 0.97007 * 120.00275 * 179.97438 * 22 21 19 46 46 H 1.07991 * 120.07486 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9704 6 7 2.1570 -3.0065 2.1046 7 6 1.4192 -3.8034 2.9072 8 6 2.2580 -4.3304 3.8297 9 6 3.5346 -3.8003 3.5267 10 6 4.7936 -4.0735 4.2488 11 8 4.7946 -4.8213 5.2073 12 7 5.9414 -3.4938 3.8450 13 6 7.1115 -3.6649 4.5916 14 6 7.0443 -3.7708 5.9757 15 6 8.1993 -3.9455 6.7134 16 6 9.4254 -4.0042 6.0791 17 6 9.4998 -3.8933 4.6964 18 8 10.7049 -3.9506 4.0742 19 6 10.7203 -3.7141 2.7468 20 1 9.8162 -3.4060 2.2427 21 6 11.8968 -3.8661 2.0291 22 7 11.9119 -3.6348 0.7341 23 14 13.4605 -4.3993 2.9009 24 1 13.5531 -5.8814 2.8888 25 1 14.6377 -3.8240 2.2022 26 1 13.4336 -3.9165 4.3051 27 6 8.3411 -3.7234 3.9519 28 7 3.3860 -3.0148 2.4786 29 1 -0.3634 0.4512 0.9233 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3634 -1.0252 -0.0709 32 1 3.0828 1.3432 -0.0709 33 1 1.5898 1.9162 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 1.5611 -0.3872 2.0628 36 1 3.0797 -0.6610 1.1757 37 1 2.0658 -2.6213 0.0452 38 1 0.5472 -2.3474 0.9324 39 1 0.3577 -3.9862 2.8280 40 1 2.0060 -5.0119 4.6287 41 1 5.9559 -2.9579 3.0366 42 1 6.0879 -3.7205 6.4749 43 1 8.1442 -4.0317 7.7885 44 1 10.3268 -4.1368 6.6589 45 1 12.7352 -3.7408 0.2320 46 1 8.3965 -3.6373 2.8769 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847350511.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:18 Heat of formation + Delta-G solvation = 41.681780 kcal Electronic energy + Delta-G solvation = -28612.371285 eV Core-core repulsion = 24504.529008 eV Total energy + Delta-G solvation = -4107.842276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.72720 -41.51903 -40.36677 -38.71576 -38.19626 -35.74968 -34.69557 -34.39825 -31.90695 -31.14523 -30.74774 -29.89984 -28.53088 -27.27281 -26.38740 -24.56120 -23.43824 -22.91922 -22.53198 -22.02252 -20.96480 -19.92239 -19.44509 -18.85375 -17.87218 -17.28728 -17.18270 -16.95391 -16.54979 -16.41248 -16.12244 -15.89996 -15.73604 -15.58227 -15.37865 -15.14215 -14.78219 -14.66986 -14.33813 -14.21558 -14.05248 -13.99547 -13.41086 -13.32671 -13.04509 -12.86702 -12.70516 -12.69085 -12.58373 -12.49937 -12.23098 -12.08365 -11.84267 -11.58317 -11.40797 -11.15747 -10.84215 -10.33899 -10.10821 -9.47478 -9.43399 -8.96251 -8.50068 -6.23250 0.12765 0.59035 0.69938 1.17660 1.32675 1.36880 1.37451 1.53651 1.97365 2.23962 2.29098 2.76962 2.89950 3.06954 3.10212 3.26752 3.62878 3.81453 3.93785 4.00564 4.11852 4.19706 4.25704 4.28301 4.39347 4.43287 4.56035 4.58823 4.60587 4.63593 4.69903 4.74058 4.76375 4.79515 4.89860 4.98014 5.03395 5.25620 5.32350 5.37321 5.44831 5.60181 5.73354 5.78308 5.85994 5.88398 5.97720 6.17903 6.29273 6.79182 6.83993 6.98788 7.56157 8.61432 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010685 B = 0.002391 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.856894 B =11709.371615 C =13565.203299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.554 5.554 3 C 0.023 3.977 4 C 0.047 3.953 5 C 0.122 3.878 6 N -0.273 5.273 7 C 0.008 3.992 8 C -0.194 4.194 9 C -0.045 4.045 10 C 0.603 3.397 11 O -0.542 6.542 12 N -0.656 5.656 13 C 0.180 3.820 14 C -0.192 4.192 15 C -0.049 4.049 16 C -0.197 4.197 17 C 0.141 3.859 18 O -0.237 6.237 19 C -0.400 4.400 20 H 0.080 0.920 21 C 0.011 3.989 22 N -0.922 5.922 23 Si 0.970 3.030 24 H -0.268 1.268 25 H -0.267 1.267 26 H -0.259 1.259 27 C -0.255 4.255 28 N -0.276 5.276 29 H 0.030 0.970 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.028 0.972 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.144 0.856 39 H 0.234 0.766 40 H 0.170 0.830 41 H 0.419 0.581 42 H 0.132 0.868 43 H 0.165 0.835 44 H 0.139 0.861 45 H 0.285 0.715 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.229 6.169 1.421 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.278 5.278 3 C -0.125 4.125 4 C -0.082 4.082 5 C 0.002 3.998 6 N -0.062 5.062 7 C -0.135 4.135 8 C -0.222 4.222 9 C -0.203 4.203 10 C 0.391 3.609 11 O -0.417 6.417 12 N -0.300 5.300 13 C 0.086 3.914 14 C -0.212 4.212 15 C -0.067 4.067 16 C -0.217 4.217 17 C 0.091 3.909 18 O -0.144 6.144 19 C -0.476 4.476 20 H 0.097 0.903 21 C -0.187 4.187 22 N -0.563 5.563 23 Si 0.792 3.208 24 H -0.193 1.193 25 H -0.191 1.191 26 H -0.183 1.183 27 C -0.277 4.277 28 N -0.114 5.114 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.122 0.878 38 H 0.162 0.838 39 H 0.250 0.750 40 H 0.188 0.812 41 H 0.256 0.744 42 H 0.150 0.850 43 H 0.182 0.818 44 H 0.157 0.843 45 H 0.095 0.905 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -27.256 6.169 0.710 27.954 hybrid contribution 0.197 0.092 0.375 0.434 sum -27.059 6.261 1.086 27.795 Atomic orbital electron populations 1.22628 0.85629 1.03730 1.01456 1.61913 1.09576 1.14715 1.41614 1.22420 1.00848 0.87888 1.01324 1.22224 1.01075 0.92453 0.92441 1.22283 1.01911 0.90045 0.85525 1.45840 1.03750 1.32846 1.23801 1.23561 1.01101 0.96332 0.92491 1.22027 0.90198 1.06022 1.03985 1.21624 0.95180 1.04660 0.98868 1.17326 0.82009 0.78721 0.82821 1.90765 1.85958 1.36477 1.28522 1.43361 1.07034 1.51173 1.28425 1.17519 0.84505 0.98146 0.91257 1.20944 0.99800 1.09145 0.91327 1.21009 0.89699 0.95174 1.00846 1.20573 0.99899 1.10952 0.90277 1.19352 0.84379 0.94262 0.92892 1.83557 1.26943 1.81011 1.22932 1.20678 0.99249 1.47059 0.80593 0.90293 1.25281 1.01808 0.96165 0.95482 1.69728 1.30304 1.49066 1.07169 0.85223 0.77307 0.79006 0.79249 1.19279 1.19136 1.18318 1.20883 0.91810 1.14756 1.00202 1.73470 1.03261 1.20714 1.13961 0.95111 0.90242 0.89425 0.91870 0.89714 0.95313 0.94156 0.91197 0.87771 0.83830 0.75001 0.81244 0.74372 0.85031 0.81763 0.84333 0.90548 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.32 127.69 1.19 1.27 16 2 N -0.55 -6.43 5.02 -948.85 -4.76 -11.19 16 3 C 0.02 0.27 9.57 127.69 1.22 1.49 16 4 C 0.05 0.62 5.06 86.31 0.44 1.06 16 5 C 0.12 1.22 6.32 86.38 0.55 1.77 16 6 N -0.27 -4.56 3.41 -347.96 -1.19 -5.75 16 7 C 0.01 0.10 11.40 83.54 0.95 1.05 16 8 C -0.19 -4.09 10.81 22.41 0.24 -3.85 16 9 C -0.05 -1.27 7.13 42.45 0.30 -0.97 16 10 C 0.60 20.96 7.56 86.74 0.66 21.61 16 11 O -0.54 -21.18 14.64 -3.95 -0.06 -21.24 16 12 N -0.66 -23.55 5.33 -306.29 -1.63 -25.18 16 13 C 0.18 7.34 6.26 38.16 0.24 7.58 16 14 C -0.19 -7.17 8.65 22.43 0.19 -6.97 16 15 C -0.05 -1.67 10.03 22.23 0.22 -1.45 16 16 C -0.20 -7.84 9.99 22.41 0.22 -7.62 16 17 C 0.14 6.85 6.64 22.56 0.15 7.00 16 18 O -0.24 -13.07 8.58 -22.82 -0.20 -13.27 16 19 C -0.40 -23.85 9.90 67.92 0.67 -23.17 16 20 H 0.08 4.95 5.53 -2.91 -0.02 4.93 16 21 C 0.01 0.65 5.49 84.83 0.47 1.12 16 22 N -0.92 -55.55 13.96 21.61 0.30 -55.25 16 23 Si 0.97 45.83 28.62 68.60 1.96 47.79 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 27 C -0.25 -11.95 9.04 22.51 0.20 -11.75 16 28 N -0.28 -6.93 11.37 -48.18 -0.55 -7.48 16 29 H 0.03 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.08 0.42 8.12 -2.39 -0.02 0.40 16 31 H 0.09 0.22 6.47 -2.39 -0.02 0.20 16 32 H 0.06 0.86 8.12 -2.39 -0.02 0.84 16 33 H 0.08 0.77 8.12 -2.39 -0.02 0.75 16 34 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.04 0.55 8.12 -2.39 -0.02 0.53 16 36 H 0.07 1.29 8.00 -2.39 -0.02 1.27 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.14 0.30 6.45 -2.39 -0.02 0.28 16 39 H 0.23 0.51 8.06 -2.91 -0.02 0.49 16 40 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 41 H 0.42 13.90 8.55 -92.71 -0.79 13.11 16 42 H 0.13 4.72 6.45 -2.91 -0.02 4.71 16 43 H 0.16 4.13 8.06 -2.91 -0.02 4.11 16 44 H 0.14 4.91 8.06 -2.91 -0.02 4.88 16 45 H 0.28 15.72 8.31 -92.70 -0.77 14.95 16 46 H 0.12 5.83 5.71 -2.92 -0.02 5.81 16 Total: -1.00 -77.35 390.05 2.03 -75.32 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.23 Total: 28.08 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 7.92 Total: -11.83 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -7.83 Total: -104.85 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.25 Total: -34.50 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.96 Total: 47.79 kcal Total: -77.35 2.03 -75.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847350511.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.000 kcal (2) G-P(sol) polarization free energy of solvation -77.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds