Wall clock time and date at job start Sat Apr 11 2020 07:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99783 * 2 1 4 4 C 1.46901 * 111.00014 * 123.95026 * 2 1 3 5 5 H 1.09004 * 109.47161 * 179.82272 * 4 2 1 6 6 C 1.52992 * 109.47178 * 59.81576 * 4 2 1 7 7 N 1.46499 * 109.46995 * 54.99862 * 6 4 2 8 8 C 1.34781 * 120.00071 * 179.97438 * 7 6 4 9 9 O 1.21585 * 119.99787 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99975 * 180.02562 * 8 7 6 11 11 C 1.39464 * 119.99520 * 184.79983 * 10 8 7 12 12 C 1.38648 * 119.64328 * 175.27706 * 11 10 8 13 13 C 1.40822 * 118.67292 * 180.27391 * 12 11 10 14 14 C 1.41540 * 120.99937 * 179.70588 * 13 12 11 15 15 H 1.08001 * 119.99999 * 25.85021 * 14 13 12 16 16 C 1.40025 * 120.00296 * 205.85212 * 14 13 12 17 17 N 1.30748 * 120.00151 * 11.52202 * 16 14 13 18 18 Si 1.86801 * 120.00281 * 191.51887 * 16 14 13 19 19 H 1.48508 * 109.46912 * 84.99311 * 18 16 14 20 20 H 1.48495 * 109.47151 * 204.99169 * 18 16 14 21 21 H 1.48499 * 109.47200 * 324.99338 * 18 16 14 22 22 C 1.41168 * 118.00478 * 359.46797 * 13 12 11 23 23 C 1.36595 * 119.12521 * 0.51808 * 22 13 12 24 24 N 1.32066 * 121.26061 * 359.73778 * 23 22 13 25 25 C 1.50707 * 109.47099 * 299.81429 * 4 2 1 26 26 C 1.34509 * 125.78938 * 227.86186 * 25 4 2 27 27 C 1.41389 * 106.83971 * 179.89291 * 26 25 4 28 28 C 1.34510 * 106.83971 * 0.37119 * 27 26 25 29 29 O 1.34300 * 125.78567 * 48.17789 * 25 4 2 30 30 H 1.08997 * 109.47147 * 303.39229 * 1 2 3 31 31 H 1.08999 * 109.47322 * 63.39407 * 1 2 3 32 32 H 1.09007 * 109.46794 * 183.38985 * 1 2 3 33 33 H 1.08999 * 109.47259 * 183.95273 * 3 2 1 34 34 H 1.09001 * 109.46827 * 303.95254 * 3 2 1 35 35 H 1.09000 * 109.47038 * 63.94785 * 3 2 1 36 36 H 1.09004 * 109.47298 * 295.00295 * 6 4 2 37 37 H 1.09002 * 109.47175 * 174.99702 * 6 4 2 38 38 H 0.96996 * 120.00304 * 0.02562 * 7 6 4 39 39 H 0.96994 * 120.00281 * 4.79420 * 10 8 7 40 40 H 1.07994 * 120.66473 * 0.02562 * 12 11 10 41 41 H 0.96994 * 120.00283 * 180.02562 * 17 16 14 42 42 H 1.07991 * 120.43602 * 180.28014 * 22 13 12 43 43 H 1.07995 * 119.37027 * 179.77047 * 23 22 13 44 44 H 1.08000 * 126.58021 * 0.03016 * 26 25 4 45 45 H 1.07999 * 126.57598 * 180.17031 * 27 26 25 46 46 H 1.08001 * 125.79308 * 179.75185 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 3.0851 -0.7523 1.1117 6 6 1.5012 -2.2112 1.0519 7 7 1.8648 -2.7752 -0.2504 8 6 1.5301 -4.0455 -0.5519 9 8 0.9260 -4.7232 0.2568 10 7 1.8651 -4.5645 -1.7498 11 6 1.4329 -5.8430 -2.1012 12 6 1.6976 -6.3314 -3.3715 13 6 1.2467 -7.6227 -3.7066 14 6 1.4844 -8.1674 -4.9911 15 1 2.3269 -7.8266 -5.5747 16 6 0.6273 -9.1480 -5.5054 17 7 -0.5092 -9.4003 -4.9103 18 14 1.1076 -10.0958 -7.0418 19 1 1.9669 -11.2469 -6.6649 20 1 -0.1166 -10.5930 -7.7195 21 1 1.8543 -9.2011 -7.9622 22 6 0.5549 -8.3596 -2.7211 23 6 0.3416 -7.7946 -1.4959 24 7 0.7741 -6.5782 -1.2175 25 6 1.5160 -0.1466 2.4252 26 6 2.2816 0.1397 3.4934 27 6 1.4291 0.7071 4.4682 28 6 0.1920 0.7260 3.9404 29 8 0.2506 0.2076 2.7028 30 1 -0.3633 0.5656 0.8580 31 1 -0.3634 0.4602 -0.9188 32 1 -0.3633 -1.0260 0.0608 33 1 3.0827 1.3434 -0.0708 34 1 1.5897 1.9163 -0.8525 35 1 1.7042 1.8724 0.9233 36 1 0.4174 -2.2321 1.1669 37 1 1.9622 -2.8006 1.8445 38 1 2.3471 -2.2347 -0.8955 39 1 2.4067 -4.0487 -2.3674 40 1 2.2354 -5.7319 -4.0911 41 1 -1.1028 -10.0798 -5.2663 42 1 0.1958 -9.3555 -2.9343 43 1 -0.1905 -8.3534 -0.7403 44 1 3.3442 -0.0292 3.5874 45 1 1.7156 1.0553 5.4496 46 1 -0.6976 1.0951 4.4291 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871718499.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:29 Heat of formation + Delta-G solvation = 47.486940 kcal Electronic energy + Delta-G solvation = -29203.548848 eV Core-core repulsion = 25095.958302 eV Total energy + Delta-G solvation = -4107.590546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.97348 -39.82787 -38.50795 -37.66422 -34.57923 -33.97663 -33.48681 -33.34644 -31.15060 -30.59274 -28.85953 -27.90614 -27.49190 -25.93984 -24.51500 -22.54049 -22.05788 -21.73628 -21.47262 -20.32719 -19.99818 -18.14159 -17.83963 -17.30759 -16.66832 -16.29045 -15.96111 -15.53903 -15.15615 -14.88695 -14.77951 -14.41048 -14.21801 -14.09440 -13.97602 -13.43325 -13.22017 -13.12366 -12.95688 -12.93228 -12.62688 -12.38939 -12.32884 -12.15817 -11.99186 -11.75513 -11.44165 -11.34301 -11.22320 -10.92662 -10.33171 -10.21673 -9.97611 -9.67432 -9.48898 -9.34373 -8.95522 -8.74807 -8.68429 -7.95354 -7.64367 -6.95231 -6.71733 -4.57669 1.38578 2.29272 2.59394 2.78139 2.83680 3.04622 3.07075 3.12170 3.28879 3.61180 3.88416 3.95073 4.23780 4.50577 4.67824 4.71155 4.75830 4.77947 4.89994 4.91249 5.14230 5.30828 5.38616 5.50162 5.54308 5.56636 5.59928 5.68134 5.76697 5.78818 5.96554 6.04108 6.15762 6.49874 6.59106 6.61566 6.66504 6.76141 6.83672 6.86502 6.97453 7.19136 7.35817 7.49977 7.61263 7.94683 8.16504 8.42526 8.55243 8.79662 8.80128 9.23020 9.80782 10.14267 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026969 B = 0.001938 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.973077 B =14441.774086 C =14919.248766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.529 5.529 3 C 0.023 3.977 4 C 0.154 3.846 5 H 0.118 0.882 6 C 0.152 3.848 7 N -0.743 5.743 8 C 0.691 3.309 9 O -0.534 6.534 10 N -0.669 5.669 11 C 0.368 3.632 12 C -0.306 4.306 13 C 0.147 3.853 14 C -0.456 4.456 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.790 5.790 18 Si 0.915 3.085 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.224 4.224 23 C 0.104 3.896 24 N -0.551 5.551 25 C -0.039 4.039 26 C -0.199 4.199 27 C -0.214 4.214 28 C -0.044 4.044 29 O -0.165 6.165 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.028 0.972 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.399 0.601 39 H 0.402 0.598 40 H 0.101 0.899 41 H 0.282 0.718 42 H 0.129 0.871 43 H 0.121 0.879 44 H 0.148 0.852 45 H 0.147 0.853 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.521 20.669 10.656 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.251 5.251 3 C -0.125 4.125 4 C 0.044 3.956 5 H 0.135 0.865 6 C 0.026 3.974 7 N -0.402 5.402 8 C 0.391 3.609 9 O -0.404 6.404 10 N -0.317 5.317 11 C 0.138 3.862 12 C -0.333 4.333 13 C 0.138 3.862 14 C -0.487 4.487 15 H 0.098 0.902 16 C -0.143 4.143 17 N -0.416 5.416 18 Si 0.739 3.261 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.186 1.186 22 C -0.247 4.247 23 C -0.047 4.047 24 N -0.271 5.271 25 C -0.091 4.091 26 C -0.219 4.219 27 C -0.234 4.234 28 C -0.112 4.112 29 O -0.061 6.061 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.233 0.767 39 H 0.237 0.763 40 H 0.119 0.881 41 H 0.093 0.907 42 H 0.147 0.853 43 H 0.139 0.861 44 H 0.166 0.834 45 H 0.165 0.835 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 3.450 19.994 11.624 23.383 hybrid contribution 0.590 0.319 -1.107 1.295 sum 4.039 20.313 10.517 23.228 Atomic orbital electron populations 1.22682 0.86227 1.03373 1.01370 1.62171 1.09367 1.14203 1.39381 1.22413 1.00742 0.88469 1.00868 1.20850 1.00278 0.92849 0.81641 0.86468 1.21086 1.00837 0.89769 0.85706 1.44925 1.64197 1.12716 1.18401 1.16061 0.80676 0.81369 0.82837 1.91028 1.43013 1.58940 1.47465 1.42544 1.55411 1.16332 1.17443 1.17768 0.94453 0.83964 0.89969 1.21177 1.17591 0.98792 0.95696 1.17590 0.87186 0.88744 0.92655 1.19544 1.10779 1.17997 1.00390 0.90176 1.25961 0.93765 0.95729 0.98874 1.69765 1.07203 1.26648 1.37985 0.86219 0.78948 0.80093 0.80815 1.19145 1.20255 1.18632 1.22028 1.07122 1.02261 0.93324 1.21627 0.97006 0.90711 0.95316 1.67224 1.18082 1.07788 1.33985 1.23280 0.82136 1.04584 0.99112 1.21667 1.01112 1.05469 0.93623 1.21828 0.93243 1.06661 1.01620 1.24158 1.00152 1.02745 0.84107 1.84214 1.29402 1.61709 1.30788 0.93686 0.91150 0.90481 0.91141 0.90986 0.95296 0.91248 0.90868 0.76707 0.76339 0.88088 0.90683 0.85341 0.86106 0.83413 0.83504 0.78263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 8.75 60.06 0.53 0.63 16 2 N -0.53 -4.68 4.46 -244.58 -1.09 -5.77 16 3 C 0.02 0.17 9.35 60.07 0.56 0.73 16 4 C 0.15 1.39 2.40 -68.86 -0.17 1.22 16 5 H 0.12 0.87 8.11 -51.93 -0.42 0.45 16 6 C 0.15 1.85 4.65 -4.05 -0.02 1.83 16 7 N -0.74 -9.96 5.39 -65.23 -0.35 -10.31 16 8 C 0.69 13.17 8.52 -86.92 -0.74 12.43 16 9 O -0.53 -12.78 14.60 5.29 0.08 -12.71 16 10 N -0.67 -12.76 5.40 -15.86 -0.09 -12.85 16 11 C 0.37 8.85 7.42 -154.67 -1.15 7.71 16 12 C -0.31 -7.48 9.74 -38.45 -0.37 -7.85 16 13 C 0.15 3.92 5.60 -106.55 -0.60 3.32 16 14 C -0.46 -11.83 9.13 -37.65 -0.34 -12.17 16 15 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 16 C 0.08 1.86 5.29 -17.34 -0.09 1.77 16 17 N -0.79 -20.15 10.77 55.55 0.60 -19.55 16 18 Si 0.91 18.24 29.57 -169.99 -5.03 13.22 16 19 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 20 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 22 C -0.22 -5.94 8.73 -39.06 -0.34 -6.28 16 23 C 0.10 2.67 11.10 -18.04 -0.20 2.47 16 24 N -0.55 -14.57 7.85 -12.75 -0.10 -14.67 16 25 C -0.04 -0.37 4.58 -35.62 -0.16 -0.53 16 26 C -0.20 -1.75 10.79 -39.70 -0.43 -2.18 16 27 C -0.21 -1.75 10.91 -39.70 -0.43 -2.18 16 28 C -0.04 -0.35 12.09 29.41 0.36 0.00 16 29 O -0.17 -1.67 7.77 5.70 0.04 -1.63 16 30 H 0.04 0.45 5.52 -51.93 -0.29 0.16 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.90 6.04 -51.93 -0.31 0.59 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.03 0.23 7.21 -51.93 -0.37 -0.15 16 36 H 0.07 0.98 6.52 -51.93 -0.34 0.64 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.40 4.29 8.16 -40.82 -0.33 3.96 16 39 H 0.40 5.96 8.71 -40.82 -0.36 5.60 16 40 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.28 6.53 8.29 -40.82 -0.34 6.19 16 42 H 0.13 3.44 6.16 -52.49 -0.32 3.12 16 43 H 0.12 2.81 8.06 -52.49 -0.42 2.39 16 44 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 46 H 0.20 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -33.63 381.63 -9.89 -43.52 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -6.10 Total: 14.08 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -3.60 Total: 0.91 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -1.03 Total: -63.15 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.12 Total: -14.33 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.63 -9.89 -43.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871718499.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.005 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds