Wall clock time and date at job start Sat Apr 11 2020 07:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99783 * 2 1 4 4 C 1.46901 * 111.00014 * 123.95026 * 2 1 3 5 5 H 1.09004 * 109.47161 * 179.82272 * 4 2 1 6 6 C 1.52992 * 109.47178 * 59.81576 * 4 2 1 7 7 N 1.46499 * 109.46995 * 54.99862 * 6 4 2 8 8 C 1.34781 * 120.00071 * 179.97438 * 7 6 4 9 9 O 1.21585 * 119.99787 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99975 * 180.02562 * 8 7 6 11 11 C 1.39464 * 119.99520 * 184.79983 * 10 8 7 12 12 C 1.38648 * 119.64328 * 175.27706 * 11 10 8 13 13 C 1.40822 * 118.67292 * 180.27391 * 12 11 10 14 14 C 1.41540 * 120.99937 * 179.70588 * 13 12 11 15 15 H 1.08001 * 119.99999 * 25.85021 * 14 13 12 16 16 C 1.40025 * 120.00296 * 205.85212 * 14 13 12 17 17 N 1.30748 * 120.00151 * 11.52202 * 16 14 13 18 18 Si 1.86801 * 120.00281 * 191.51887 * 16 14 13 19 19 H 1.48508 * 109.46912 * 84.99311 * 18 16 14 20 20 H 1.48495 * 109.47151 * 204.99169 * 18 16 14 21 21 H 1.48499 * 109.47200 * 324.99338 * 18 16 14 22 22 C 1.41168 * 118.00478 * 359.46797 * 13 12 11 23 23 C 1.36595 * 119.12521 * 0.51808 * 22 13 12 24 24 N 1.32066 * 121.26061 * 359.73778 * 23 22 13 25 25 C 1.50707 * 109.47099 * 299.81429 * 4 2 1 26 26 C 1.34509 * 125.78938 * 227.86186 * 25 4 2 27 27 C 1.41389 * 106.83971 * 179.89291 * 26 25 4 28 28 C 1.34510 * 106.83971 * 0.37119 * 27 26 25 29 29 O 1.34300 * 125.78567 * 48.17789 * 25 4 2 30 30 H 1.08997 * 109.47147 * 303.39229 * 1 2 3 31 31 H 1.08999 * 109.47322 * 63.39407 * 1 2 3 32 32 H 1.09007 * 109.46794 * 183.38985 * 1 2 3 33 33 H 1.08999 * 109.47259 * 183.95273 * 3 2 1 34 34 H 1.09001 * 109.46827 * 303.95254 * 3 2 1 35 35 H 1.09000 * 109.47038 * 63.94785 * 3 2 1 36 36 H 1.09004 * 109.47298 * 295.00295 * 6 4 2 37 37 H 1.09002 * 109.47175 * 174.99702 * 6 4 2 38 38 H 0.96996 * 120.00304 * 0.02562 * 7 6 4 39 39 H 0.96994 * 120.00281 * 4.79420 * 10 8 7 40 40 H 1.07994 * 120.66473 * 0.02562 * 12 11 10 41 41 H 0.96994 * 120.00283 * 180.02562 * 17 16 14 42 42 H 1.07991 * 120.43602 * 180.28014 * 22 13 12 43 43 H 1.07995 * 119.37027 * 179.77047 * 23 22 13 44 44 H 1.08000 * 126.58021 * 0.03016 * 26 25 4 45 45 H 1.07999 * 126.57598 * 180.17031 * 27 26 25 46 46 H 1.08001 * 125.79308 * 179.75185 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 3.0851 -0.7523 1.1117 6 6 1.5012 -2.2112 1.0519 7 7 1.8648 -2.7752 -0.2504 8 6 1.5301 -4.0455 -0.5519 9 8 0.9260 -4.7232 0.2568 10 7 1.8651 -4.5645 -1.7498 11 6 1.4329 -5.8430 -2.1012 12 6 1.6976 -6.3314 -3.3715 13 6 1.2467 -7.6227 -3.7066 14 6 1.4844 -8.1674 -4.9911 15 1 2.3269 -7.8266 -5.5747 16 6 0.6273 -9.1480 -5.5054 17 7 -0.5092 -9.4003 -4.9103 18 14 1.1076 -10.0958 -7.0418 19 1 1.9669 -11.2469 -6.6649 20 1 -0.1166 -10.5930 -7.7195 21 1 1.8543 -9.2011 -7.9622 22 6 0.5549 -8.3596 -2.7211 23 6 0.3416 -7.7946 -1.4959 24 7 0.7741 -6.5782 -1.2175 25 6 1.5160 -0.1466 2.4252 26 6 2.2816 0.1397 3.4934 27 6 1.4291 0.7071 4.4682 28 6 0.1920 0.7260 3.9404 29 8 0.2506 0.2076 2.7028 30 1 -0.3633 0.5656 0.8580 31 1 -0.3634 0.4602 -0.9188 32 1 -0.3633 -1.0260 0.0608 33 1 3.0827 1.3434 -0.0708 34 1 1.5897 1.9163 -0.8525 35 1 1.7042 1.8724 0.9233 36 1 0.4174 -2.2321 1.1669 37 1 1.9622 -2.8006 1.8445 38 1 2.3471 -2.2347 -0.8955 39 1 2.4067 -4.0487 -2.3674 40 1 2.2354 -5.7319 -4.0911 41 1 -1.1028 -10.0798 -5.2663 42 1 0.1958 -9.3555 -2.9343 43 1 -0.1905 -8.3534 -0.7403 44 1 3.3442 -0.0292 3.5874 45 1 1.7156 1.0553 5.4496 46 1 -0.6976 1.0951 4.4291 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871718499.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:28 Heat of formation + Delta-G solvation = 24.612342 kcal Electronic energy + Delta-G solvation = -29204.540765 eV Core-core repulsion = 25095.958302 eV Total energy + Delta-G solvation = -4108.582463 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.63244 -41.39547 -39.94238 -38.90153 -36.28029 -35.34943 -35.22606 -34.03606 -32.55052 -32.00275 -30.38274 -28.86725 -28.34675 -27.87605 -25.44502 -23.78985 -23.56803 -22.80131 -22.66492 -21.60895 -21.01996 -19.66681 -19.47118 -18.09536 -17.86479 -17.36408 -17.18747 -16.86321 -16.36097 -16.15920 -16.15232 -15.92336 -15.61435 -15.47644 -14.95176 -14.84432 -14.67322 -14.36248 -14.16498 -13.86422 -13.82744 -13.55099 -13.23072 -13.14528 -13.07811 -12.87532 -12.80308 -12.73176 -12.49850 -12.23982 -12.04679 -11.82726 -11.45234 -11.24728 -11.16285 -10.86192 -10.05513 -9.93087 -9.63494 -9.57847 -9.38109 -8.81330 -8.58203 -6.55798 0.71209 0.86729 1.02118 1.42462 1.54827 1.57059 1.60127 1.74307 2.06501 2.21699 2.33626 2.86605 2.90563 3.22724 3.63909 3.73005 3.79292 4.02074 4.14775 4.16456 4.20754 4.27521 4.49616 4.58803 4.62426 4.69935 4.73286 4.77821 4.88020 4.90398 4.97005 4.98729 5.02502 5.04356 5.07375 5.24511 5.27768 5.46892 5.53274 5.56930 5.67344 5.82929 5.92496 5.95753 5.98952 6.20497 6.29769 6.58008 6.82371 6.85384 7.07828 7.67029 7.94622 8.30650 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026969 B = 0.001938 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.973077 B =14441.774086 C =14919.248766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.531 5.531 3 C 0.026 3.974 4 C 0.165 3.835 5 H 0.141 0.859 6 C 0.154 3.846 7 N -0.715 5.715 8 C 0.689 3.311 9 O -0.585 6.585 10 N -0.657 5.657 11 C 0.367 3.633 12 C -0.313 4.313 13 C 0.118 3.882 14 C -0.481 4.481 15 H 0.088 0.912 16 C 0.033 3.967 17 N -0.820 5.820 18 Si 0.993 3.007 19 H -0.261 1.261 20 H -0.270 1.270 21 H -0.254 1.254 22 C -0.243 4.243 23 C 0.097 3.903 24 N -0.579 5.579 25 C -0.058 4.058 26 C -0.201 4.201 27 C -0.226 4.226 28 C -0.049 4.049 29 O -0.184 6.184 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.022 0.978 36 H 0.047 0.953 37 H 0.065 0.935 38 H 0.416 0.584 39 H 0.423 0.577 40 H 0.125 0.875 41 H 0.291 0.709 42 H 0.118 0.882 43 H 0.135 0.865 44 H 0.164 0.836 45 H 0.166 0.834 46 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.954 22.277 9.825 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.253 5.253 3 C -0.121 4.121 4 C 0.056 3.944 5 H 0.158 0.842 6 C 0.029 3.971 7 N -0.374 5.374 8 C 0.389 3.611 9 O -0.460 6.460 10 N -0.307 5.307 11 C 0.137 3.863 12 C -0.339 4.339 13 C 0.110 3.890 14 C -0.511 4.511 15 H 0.107 0.893 16 C -0.183 4.183 17 N -0.446 5.446 18 Si 0.813 3.187 19 H -0.186 1.186 20 H -0.194 1.194 21 H -0.177 1.177 22 C -0.266 4.266 23 C -0.053 4.053 24 N -0.299 5.299 25 C -0.110 4.110 26 C -0.221 4.221 27 C -0.245 4.245 28 C -0.116 4.116 29 O -0.081 6.081 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.253 0.747 39 H 0.261 0.739 40 H 0.143 0.857 41 H 0.102 0.898 42 H 0.136 0.864 43 H 0.153 0.847 44 H 0.181 0.819 45 H 0.184 0.816 46 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.928 21.696 10.786 24.726 hybrid contribution 0.109 -0.084 -0.757 0.769 sum 5.037 21.612 10.030 24.353 Atomic orbital electron populations 1.22578 0.87089 1.01806 1.01677 1.62198 1.08650 1.15360 1.39142 1.22442 1.01665 0.87214 1.00801 1.20743 1.01270 0.90473 0.81936 0.84174 1.21118 0.99613 0.91892 0.84473 1.44643 1.62795 1.10720 1.19198 1.16241 0.80199 0.82514 0.82154 1.90998 1.45332 1.60709 1.48959 1.42354 1.55304 1.14951 1.18086 1.18013 0.93411 0.85226 0.89689 1.21367 1.17748 0.98445 0.96369 1.18016 0.87795 0.89895 0.93335 1.19875 1.11543 1.19242 1.00461 0.89345 1.26924 0.93203 0.95995 1.02209 1.69829 1.08118 1.27035 1.39594 0.85051 0.78808 0.78446 0.76419 1.18596 1.19426 1.17732 1.21985 1.08553 1.02140 0.93969 1.21873 0.96958 0.90978 0.95516 1.67323 1.19306 1.08218 1.35034 1.23322 0.82296 1.05803 0.99597 1.21986 1.02010 1.04723 0.93363 1.22161 0.93193 1.06686 1.02422 1.24826 1.01446 1.01935 0.83432 1.84196 1.29862 1.62196 1.31832 0.93863 0.90436 0.92870 0.89525 0.90297 0.95980 0.93418 0.91637 0.74668 0.73851 0.85717 0.89829 0.86384 0.84729 0.81855 0.81622 0.75544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.75 127.69 1.12 1.43 16 2 N -0.53 -8.56 4.46 -927.70 -4.14 -12.69 16 3 C 0.03 0.32 9.35 127.69 1.19 1.51 16 4 C 0.17 2.76 2.40 44.17 0.11 2.87 16 5 H 0.14 1.70 8.11 -2.39 -0.02 1.68 16 6 C 0.15 3.73 4.65 86.38 0.40 4.13 16 7 N -0.71 -18.50 5.39 -478.54 -2.58 -21.08 16 8 C 0.69 26.19 8.52 179.05 1.53 27.72 16 9 O -0.59 -28.65 14.60 -3.99 -0.06 -28.71 16 10 N -0.66 -24.64 5.40 -322.35 -1.74 -26.38 16 11 C 0.37 17.76 7.42 132.76 0.99 18.75 16 12 C -0.31 -15.31 9.74 23.00 0.22 -15.09 16 13 C 0.12 6.40 5.60 -21.11 -0.12 6.28 16 14 C -0.48 -24.99 9.13 23.52 0.21 -24.77 16 15 H 0.09 4.30 7.87 -2.91 -0.02 4.28 16 16 C 0.03 1.61 5.29 85.29 0.45 2.06 16 17 N -0.82 -42.17 10.77 21.84 0.24 -41.94 16 18 Si 0.99 36.60 29.57 68.60 2.03 38.63 16 19 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 20 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 21 H -0.25 -8.95 7.11 99.48 0.71 -8.25 16 22 C -0.24 -13.29 8.73 22.60 0.20 -13.09 16 23 C 0.10 5.16 11.10 84.27 0.94 6.10 16 24 N -0.58 -31.24 7.85 -194.26 -1.53 -32.77 16 25 C -0.06 -1.05 4.58 24.83 0.11 -0.94 16 26 C -0.20 -3.21 10.79 22.19 0.24 -2.97 16 27 C -0.23 -3.29 10.91 22.19 0.24 -3.05 16 28 C -0.05 -0.73 12.09 66.97 0.81 0.08 16 29 O -0.18 -3.62 7.77 -2.53 -0.02 -3.64 16 30 H 0.04 0.84 5.52 -2.39 -0.01 0.83 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.27 6.04 -2.38 -0.01 1.25 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.02 0.31 7.21 -2.39 -0.02 0.29 16 36 H 0.05 1.39 6.52 -2.39 -0.02 1.38 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.42 8.07 8.16 -92.71 -0.76 7.32 16 39 H 0.42 11.81 8.71 -92.71 -0.81 11.00 16 40 H 0.12 5.32 8.06 -2.91 -0.02 5.30 16 41 H 0.29 13.48 8.29 -92.71 -0.77 12.71 16 42 H 0.12 6.58 6.16 -2.92 -0.02 6.57 16 43 H 0.14 6.49 8.06 -2.91 -0.02 6.47 16 44 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 45 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 46 H 0.23 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -74.67 381.63 0.32 -74.36 By element: Atomic # 1 Polarization: 43.74 SS G_CDS: -0.53 Total: 43.22 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 8.64 Total: 11.01 kcal Atomic # 7 Polarization: -125.11 SS G_CDS: -9.75 Total: -134.86 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.08 Total: -32.35 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Total: -74.67 0.32 -74.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871718499.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.968 kcal (2) G-P(sol) polarization free energy of solvation -74.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds