Wall clock time and date at job start Sat Apr 11 2020 07:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47132 * 110.99645 * 2 1 4 4 C 1.54042 * 106.79068 * 219.12352 * 3 2 1 5 5 H 1.08999 * 113.42153 * 263.62214 * 4 3 2 6 6 C 1.55137 * 108.24036 * 135.88980 * 4 3 2 7 7 C 1.54854 * 101.76619 * 286.04911 * 6 4 3 8 8 N 1.47406 * 104.81424 * 322.80966 * 7 6 4 9 9 C 1.34771 * 125.59440 * 204.55264 * 8 7 6 10 10 O 1.21357 * 120.00556 * 180.02562 * 9 8 7 11 11 C 1.49377 * 120.00033 * 0.02751 * 9 8 7 12 12 O 1.21355 * 119.99504 * 0.02562 * 11 9 8 13 13 N 1.34774 * 120.00002 * 179.97438 * 11 9 8 14 14 C 1.39113 * 119.99762 * 174.85436 * 13 11 9 15 15 C 1.39704 * 119.57808 * 185.38787 * 14 13 11 16 16 C 1.38655 * 119.49483 * 179.79236 * 15 14 13 17 17 C 1.38346 * 118.66802 * 0.47469 * 16 15 14 18 18 C 1.40588 * 119.13620 * 359.75025 * 17 16 15 19 19 C 1.41342 * 119.78368 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00096 * 0.02562 * 19 18 17 21 21 C 1.40034 * 119.99879 * 180.02562 * 19 18 17 22 22 N 1.30739 * 119.99817 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99848 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47112 * 89.99670 * 23 21 19 25 25 H 1.48494 * 109.46997 * 209.99543 * 23 21 19 26 26 H 1.48496 * 109.47313 * 329.99803 * 23 21 19 27 27 N 1.31932 * 119.57877 * 5.66538 * 14 13 11 28 28 C 1.46732 * 108.81231 * 24.57881 * 8 7 6 29 29 H 1.09006 * 111.79004 * 235.92809 * 28 8 7 30 30 C 1.47054 * 110.99980 * 238.33818 * 2 1 3 31 31 H 1.09000 * 109.47070 * 59.99813 * 1 2 3 32 32 H 1.09000 * 109.46378 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47323 * 299.99387 * 1 2 3 34 34 H 1.08993 * 109.99271 * 99.79331 * 3 2 1 35 35 H 1.08993 * 110.02644 * 338.48111 * 3 2 1 36 36 H 1.09005 * 110.96697 * 44.16535 * 6 4 3 37 37 H 1.08996 * 110.97261 * 167.93197 * 6 4 3 38 38 H 1.09007 * 110.37156 * 203.97755 * 7 6 4 39 39 H 1.09001 * 110.37159 * 81.64498 * 7 6 4 40 40 H 0.97003 * 120.00051 * 354.85866 * 13 11 9 41 41 H 1.08007 * 120.25404 * 0.02562 * 15 14 13 42 42 H 1.08004 * 120.66429 * 180.22637 * 16 15 14 43 43 H 1.07997 * 120.42661 * 179.76618 * 17 16 15 44 44 H 0.97007 * 119.99912 * 180.02562 * 22 21 19 45 45 H 1.09005 * 109.76391 * 243.57608 * 30 2 1 46 46 H 1.09003 * 109.76274 * 4.28970 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9962 1.3736 0.0000 4 6 3.2238 1.3791 -0.9306 5 1 4.1695 1.2642 -0.4009 6 6 3.1482 2.6433 -1.8267 7 6 2.0224 2.2602 -2.8187 8 7 2.2181 0.8216 -3.0736 9 6 1.8120 0.1576 -4.1738 10 8 2.0269 -1.0322 -4.2784 11 6 1.0973 0.8861 -5.2646 12 8 0.8828 2.0760 -5.1602 13 7 0.6917 0.2221 -6.3650 14 6 -0.0666 0.8752 -7.3313 15 6 -0.5778 0.1519 -8.4117 16 6 -1.3370 0.8037 -9.3716 17 6 -1.5577 2.1625 -9.2331 18 6 -1.0122 2.8352 -8.1257 19 6 -1.2287 4.2233 -7.9710 20 1 -1.8119 4.7637 -8.7019 21 6 -0.6869 4.8980 -6.8700 22 7 0.0187 4.2438 -5.9849 23 14 -0.9737 6.7325 -6.6652 24 1 -2.2126 6.9549 -5.8772 25 1 0.1808 7.3375 -5.9537 26 1 -1.1173 7.3633 -8.0018 27 7 -0.2892 2.1707 -7.2187 28 6 2.9269 0.2310 -1.9326 29 1 3.8424 -0.2733 -2.2421 30 6 1.9960 -0.7206 -1.1685 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8900 34 1 2.2924 1.6591 1.0093 35 1 1.2406 2.0634 -0.3756 36 1 2.8708 3.5201 -1.2416 37 1 4.0900 2.8073 -2.3501 38 1 2.1235 2.8268 -3.7444 39 1 1.0449 2.4365 -2.3698 40 1 0.9284 -0.7111 -6.4832 41 1 -0.3863 -0.9076 -8.4967 42 1 -1.7445 0.2624 -10.2126 43 1 -2.1418 2.6992 -9.9660 44 1 0.3937 4.7111 -5.2220 45 1 2.5543 -1.5973 -0.8400 46 1 1.1731 -1.0284 -1.8137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890294809.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:08 Heat of formation + Delta-G solvation = 19.057879 kcal Electronic energy + Delta-G solvation = -31231.092209 eV Core-core repulsion = 27122.268887 eV Total energy + Delta-G solvation = -4108.823322 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.11938 -39.58430 -38.26284 -37.18549 -35.90363 -34.29803 -33.14879 -32.13678 -30.47535 -30.37328 -29.25107 -27.73926 -25.87817 -25.70382 -24.71661 -22.65811 -21.80568 -21.42482 -20.81990 -20.11396 -19.08711 -17.96579 -17.17454 -16.70443 -16.34975 -15.79241 -15.47283 -15.26405 -14.75230 -14.62061 -14.51836 -14.18919 -14.13092 -13.91105 -13.63562 -13.30052 -13.24643 -12.94581 -12.69346 -12.25790 -12.22336 -12.05509 -12.02180 -11.76370 -11.44687 -11.37318 -11.23953 -11.13406 -11.03886 -10.87746 -10.72885 -10.70302 -10.55645 -10.01321 -9.83934 -9.13330 -8.94803 -8.84814 -8.38849 -8.06917 -7.36225 -7.09655 -6.26508 -4.48928 1.87225 2.58760 2.78201 3.04719 3.09898 3.12777 3.20108 3.80507 3.81834 3.90134 3.97944 4.15749 4.42945 4.47800 4.82315 4.90277 4.92861 4.98840 5.08766 5.19743 5.26002 5.35936 5.37639 5.49310 5.67677 5.74779 5.78281 5.85083 5.86056 5.93180 6.01758 6.03352 6.04249 6.28763 6.39981 6.54255 6.72339 6.76247 6.77581 6.83786 7.12402 7.29964 7.42521 7.48949 7.72794 7.79689 7.99482 8.12296 8.33206 8.59210 8.89346 8.97899 10.10297 10.36758 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011742 B = 0.003949 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.002196 B = 7088.595856 C = 8712.089152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.533 5.533 3 C 0.046 3.954 4 C -0.106 4.106 5 H 0.109 0.891 6 C -0.129 4.129 7 C 0.096 3.904 8 N -0.588 5.588 9 C 0.521 3.479 10 O -0.533 6.533 11 C 0.469 3.531 12 O -0.382 6.382 13 N -0.638 5.638 14 C 0.368 3.632 15 C -0.348 4.348 16 C -0.036 4.036 17 C -0.300 4.300 18 C 0.272 3.728 19 C -0.424 4.424 20 H 0.083 0.917 21 C 0.061 3.939 22 N -0.663 5.663 23 Si 0.897 3.103 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.263 1.263 27 N -0.474 5.474 28 C 0.120 3.880 29 H 0.094 0.906 30 C 0.037 3.963 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.411 0.589 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.270 0.730 45 H 0.085 0.915 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 -3.620 12.107 14.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.257 5.257 3 C -0.082 4.082 4 C -0.126 4.126 5 H 0.127 0.873 6 C -0.167 4.167 7 C -0.026 4.026 8 N -0.323 5.323 9 C 0.305 3.695 10 O -0.410 6.410 11 C 0.245 3.755 12 O -0.245 6.245 13 N -0.287 5.287 14 C 0.130 3.870 15 C -0.374 4.374 16 C -0.060 4.060 17 C -0.324 4.324 18 C 0.147 3.853 19 C -0.454 4.454 20 H 0.101 0.899 21 C -0.168 4.168 22 N -0.282 5.282 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.187 1.187 27 N -0.193 5.193 28 C 0.016 3.984 29 H 0.112 0.888 30 C -0.091 4.091 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.132 0.868 39 H 0.087 0.913 40 H 0.247 0.753 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.082 0.918 45 H 0.104 0.896 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.585 -3.128 13.487 15.331 hybrid contribution -0.691 0.090 -1.391 1.556 sum 5.894 -3.039 12.096 13.794 Atomic orbital electron populations 1.22548 0.87340 1.02118 1.00778 1.63186 1.08208 1.13930 1.40328 1.22908 0.95515 0.89929 0.99818 1.23172 0.99655 0.94617 0.95121 0.87255 1.22912 0.99710 0.97114 0.97013 1.22738 0.98063 0.80258 1.01536 1.48241 1.56026 1.10937 1.17095 1.20585 0.79664 0.86849 0.82390 1.90701 1.56088 1.14938 1.79228 1.20022 0.83231 0.88552 0.83663 1.91150 1.46346 1.11249 1.75739 1.42987 1.51998 1.14782 1.18899 1.18535 0.90695 0.91258 0.86477 1.20518 1.16490 0.98813 1.01568 1.20588 0.95153 0.94253 0.96004 1.21657 1.12488 0.94687 1.03521 1.18357 0.87299 0.93274 0.86391 1.19588 1.27465 0.91791 1.06602 0.89868 1.26148 0.94966 0.99740 0.95934 1.70322 1.17063 1.35183 1.05612 0.86495 0.78614 0.83291 0.79444 1.19648 1.20268 1.18714 1.68636 1.19320 1.02880 1.28458 1.22442 0.95614 0.94565 0.85815 0.88765 1.22975 0.98677 0.97104 0.90389 0.95203 0.91394 0.91345 0.90082 0.92680 0.89415 0.90233 0.86828 0.91284 0.75341 0.88735 0.88351 0.88372 0.91817 0.89650 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.05 60.07 0.54 0.77 16 2 N -0.53 -6.00 5.40 -241.58 -1.30 -7.30 16 3 C 0.05 0.45 6.03 -3.15 -0.02 0.43 16 4 C -0.11 -0.99 4.33 -87.75 -0.38 -1.37 16 5 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.13 -1.26 6.35 -24.62 -0.16 -1.42 16 7 C 0.10 1.32 5.60 -2.57 -0.01 1.30 16 8 N -0.59 -8.66 2.99 -162.95 -0.49 -9.15 16 9 C 0.52 9.22 7.46 -11.62 -0.09 9.13 16 10 O -0.53 -9.88 16.35 5.49 0.09 -9.79 16 11 C 0.47 9.66 7.81 -11.62 -0.09 9.57 16 12 O -0.38 -8.77 9.53 5.49 0.05 -8.72 16 13 N -0.64 -13.28 5.37 -11.83 -0.06 -13.34 16 14 C 0.37 8.92 7.42 -155.09 -1.15 7.77 16 15 C -0.35 -7.80 9.95 -38.88 -0.39 -8.18 16 16 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 17 C -0.30 -7.37 9.83 -38.66 -0.38 -7.75 16 18 C 0.27 7.39 6.55 -85.00 -0.56 6.83 16 19 C -0.42 -11.20 9.14 -37.73 -0.34 -11.55 16 20 H 0.08 2.07 7.85 -52.49 -0.41 1.65 16 21 C 0.06 1.51 5.50 -17.34 -0.10 1.42 16 22 N -0.66 -17.01 8.99 55.55 0.50 -16.51 16 23 Si 0.90 18.29 29.56 -169.99 -5.02 13.27 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 27 N -0.47 -12.83 5.74 -10.28 -0.06 -12.89 16 28 C 0.12 1.44 3.59 -66.35 -0.24 1.20 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 30 C 0.04 0.45 6.44 -3.48 -0.02 0.43 16 31 H 0.03 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.58 6.05 -51.93 -0.31 0.26 16 36 H 0.09 0.72 8.08 -51.93 -0.42 0.30 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.11 1.87 6.12 -51.93 -0.32 1.55 16 39 H 0.07 0.99 7.18 -51.93 -0.37 0.62 16 40 H 0.41 7.40 8.18 -40.82 -0.33 7.06 16 41 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 42 H 0.10 1.86 8.06 -52.48 -0.42 1.43 16 43 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 44 H 0.27 6.36 8.29 -40.82 -0.34 6.03 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.06 0.94 6.73 -51.93 -0.35 0.59 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -30.40 368.17 -10.83 -41.23 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.30 Total: 10.24 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -3.78 Total: 7.40 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -1.41 Total: -59.18 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.14 Total: -18.51 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.02 Total: 13.27 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.40 -10.83 -41.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890294809.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.288 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds