Wall clock time and date at job start Sat Apr 11 2020 07:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38396 * 120.11725 * 2 1 4 4 C 1.37688 * 119.98135 * 180.02562 * 3 2 1 5 5 C 1.38932 * 120.78619 * 0.25927 * 4 3 2 6 6 C 1.39247 * 118.87467 * 359.56386 * 5 4 3 7 7 C 1.37973 * 120.23869 * 0.29104 * 6 5 4 8 8 C 1.50703 * 119.82390 * 180.02562 * 7 6 5 9 9 O 1.36130 * 111.24690 * 179.38524 * 5 4 3 10 10 C 1.43758 * 109.28345 * 18.63847 * 9 5 4 11 11 H 1.09004 * 110.90509 * 90.82301 * 10 9 5 12 12 C 1.50698 * 110.74697 * 214.09473 * 10 9 5 13 13 O 1.21277 * 120.00183 * 358.38353 * 12 10 9 14 14 N 1.34774 * 120.00123 * 178.38173 * 12 10 9 15 15 C 1.46498 * 120.00321 * 180.02562 * 14 12 10 16 16 H 1.09001 * 110.88734 * 37.42672 * 15 14 12 17 17 C 1.54907 * 111.00598 * 273.54806 * 15 14 12 18 18 N 1.47420 * 104.83524 * 204.91448 * 17 15 14 19 19 C 1.36935 * 125.65209 * 204.16221 * 18 17 15 20 20 H 1.08004 * 120.00235 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99734 * 359.95746 * 19 18 17 22 22 N 1.31614 * 120.00076 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00049 * 179.97438 * 21 19 18 24 24 H 1.48511 * 109.46970 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47351 * 120.00089 * 23 21 19 26 26 H 1.48496 * 109.47101 * 240.00232 * 23 21 19 27 27 C 1.47026 * 108.70428 * 24.12518 * 18 17 15 28 28 C 1.54330 * 107.26840 * 358.94103 * 27 18 17 29 29 H 1.08998 * 110.71700 * 96.16950 * 28 27 18 30 30 C 1.52994 * 110.71826 * 219.44364 * 28 27 18 31 31 C 1.51642 * 132.19356 * 180.30308 * 4 3 2 32 32 H 1.09001 * 109.47542 * 270.02257 * 1 2 3 33 33 H 1.09005 * 109.47514 * 30.02408 * 1 2 3 34 34 H 1.09001 * 109.47152 * 150.01953 * 1 2 3 35 35 H 1.08001 * 120.00833 * 0.02562 * 3 2 1 36 36 H 1.07998 * 119.87986 * 180.31543 * 6 5 4 37 37 H 1.09003 * 109.46732 * 90.00323 * 8 7 6 38 38 H 1.09002 * 109.47236 * 210.00272 * 8 7 6 39 39 H 1.08998 * 109.47490 * 330.00024 * 8 7 6 40 40 H 0.97002 * 119.99855 * 359.97438 * 14 12 10 41 41 H 1.08997 * 110.36783 * 86.07168 * 17 15 14 42 42 H 1.08997 * 110.45914 * 323.79818 * 17 15 14 43 43 H 0.97002 * 119.99964 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.88351 * 118.35702 * 27 18 17 45 45 H 1.08998 * 109.88379 * 239.52492 * 27 18 17 46 46 H 1.08994 * 109.47458 * 58.54762 * 30 28 27 47 47 H 1.09010 * 109.46817 * 178.55144 * 30 28 27 48 48 H 1.09000 * 109.47214 * 298.54123 * 30 28 27 49 49 H 1.09004 * 110.94087 * 46.13133 * 31 4 3 50 50 H 1.08996 * 110.94319 * 282.44633 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1971 0.0000 4 6 3.5783 1.1939 -0.0005 5 6 4.2865 -0.0013 -0.0065 6 6 3.5804 -1.2015 -0.0026 7 6 2.2007 -1.1958 0.0009 8 6 1.4458 -2.5001 0.0056 9 8 5.6295 0.2211 -0.0195 10 6 5.8919 1.5675 0.4107 11 1 6.0397 1.6091 1.4898 12 6 7.0861 2.1356 -0.3119 13 8 7.6946 1.4524 -1.1080 14 7 7.4778 3.4029 -0.0735 15 6 8.6384 3.9554 -0.7764 16 1 8.6746 3.5998 -1.8061 17 6 9.9523 3.6212 -0.0270 18 7 10.8975 4.6771 -0.4331 19 6 12.2628 4.5734 -0.4222 20 1 12.8704 5.4076 -0.7407 21 6 12.8661 3.3961 -0.0015 22 7 12.1258 2.3794 0.3865 23 14 14.7286 3.2542 0.0127 24 1 15.3256 4.5263 -0.4680 25 1 15.1937 2.9802 1.3961 26 1 15.1473 2.1434 -0.8794 27 6 10.1314 5.8599 -0.8525 28 6 8.6348 5.5061 -0.7226 29 1 8.2366 5.8580 0.2290 30 6 7.8379 6.0865 -1.8925 31 6 4.5994 2.3149 0.0053 32 1 -0.3634 0.0004 1.0276 33 1 -0.3634 0.8898 -0.5142 34 1 -0.3633 -0.8902 -0.5135 35 1 1.6634 2.1336 0.0004 36 1 4.1146 -2.1401 -0.0020 37 1 1.2664 -2.8123 1.0345 38 1 0.4922 -2.3700 -0.5061 39 1 2.0327 -3.2615 -0.5081 40 1 6.9908 3.9495 0.5629 41 1 10.3236 2.6424 -0.3305 42 1 9.7935 3.6484 1.0510 43 1 12.5473 1.5569 0.6808 44 1 10.3701 6.7045 -0.2063 45 1 10.3658 6.1051 -1.8884 46 1 8.2332 5.6967 -2.8305 47 1 6.7898 5.8033 -1.7943 48 1 7.9226 7.1732 -1.8862 49 1 4.3405 3.0740 0.7435 50 1 4.6992 2.7561 -0.9864 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080979512.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:15:43 Heat of formation + Delta-G solvation = -18.228872 kcal Electronic energy + Delta-G solvation = -29998.160200 eV Core-core repulsion = 25991.260346 eV Total energy + Delta-G solvation = -4006.899854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.50201 -39.46698 -38.30281 -37.28586 -34.06868 -33.46583 -32.71122 -32.22006 -31.10816 -30.37080 -28.12466 -27.14646 -26.69001 -25.62117 -23.96812 -23.16731 -22.26723 -21.00439 -20.47940 -20.11030 -19.53520 -17.54804 -17.19356 -16.97865 -16.70869 -15.94005 -15.34814 -15.17414 -14.90564 -14.61773 -14.38888 -14.16846 -13.76755 -13.71597 -13.39593 -13.17166 -13.09758 -12.95900 -12.92784 -12.77462 -12.55089 -12.46799 -12.29317 -12.27868 -11.92685 -11.72403 -11.57039 -11.25677 -11.09605 -11.06480 -10.80475 -10.78544 -10.63402 -10.36995 -9.97708 -9.78463 -9.74579 -9.47645 -8.94589 -8.64315 -8.52680 -8.12695 -6.83086 -5.61627 -3.05723 1.04265 1.17091 2.64993 2.85736 3.36605 3.42435 3.47075 3.50513 3.64562 4.16781 4.31188 4.50866 4.57765 4.63819 4.74246 4.82514 4.86890 4.95053 5.05685 5.13662 5.21830 5.25594 5.28048 5.38340 5.40202 5.43822 5.47767 5.51660 5.54333 5.58113 5.71770 5.73413 5.91988 5.92456 6.00742 6.05592 6.11794 6.21009 6.21481 6.33991 6.35249 6.45066 6.47196 6.64576 6.73987 6.91552 7.03745 7.44185 7.63145 7.77036 7.92446 8.38806 8.49096 9.22842 9.84245 10.46927 11.41191 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018870 B = 0.002292 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.449485 B =12214.848253 C =13468.653671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C -0.064 4.064 4 C -0.177 4.177 5 C 0.111 3.889 6 C -0.135 4.135 7 C -0.052 4.052 8 C -0.117 4.117 9 O -0.271 6.271 10 C 0.065 3.935 11 H 0.113 0.887 12 C 0.515 3.485 13 O -0.506 6.506 14 N -0.708 5.708 15 C 0.122 3.878 16 H 0.091 0.909 17 C 0.148 3.852 18 N -0.603 5.603 19 C -0.227 4.227 20 H 0.080 0.920 21 C -0.010 4.010 22 N -0.916 5.916 23 Si 0.915 3.085 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.141 3.859 28 C -0.110 4.110 29 H 0.074 0.926 30 C -0.137 4.137 31 C -0.097 4.097 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.395 0.605 41 H 0.113 0.887 42 H 0.014 0.986 43 H 0.253 0.747 44 H 0.024 0.976 45 H 0.028 0.972 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.053 0.947 49 H 0.100 0.900 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.200 -1.257 1.310 26.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.122 4.122 3 C -0.082 4.082 4 C -0.178 4.178 5 C 0.065 3.935 6 C -0.154 4.154 7 C -0.052 4.052 8 C -0.173 4.173 9 O -0.183 6.183 10 C 0.005 3.995 11 H 0.130 0.870 12 C 0.298 3.702 13 O -0.380 6.380 14 N -0.360 5.360 15 C 0.017 3.983 16 H 0.109 0.891 17 C 0.022 3.978 18 N -0.329 5.329 19 C -0.355 4.355 20 H 0.097 0.903 21 C -0.206 4.206 22 N -0.564 5.564 23 Si 0.745 3.255 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.015 3.985 28 C -0.130 4.130 29 H 0.093 0.907 30 C -0.195 4.195 31 C -0.134 4.134 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.228 0.772 41 H 0.131 0.869 42 H 0.032 0.968 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.046 0.954 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.118 0.882 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -25.360 -2.062 0.696 25.453 hybrid contribution 0.829 0.412 0.549 1.076 sum -24.531 -1.649 1.244 24.618 Atomic orbital electron populations 1.20756 0.90909 1.02736 1.02168 1.19572 0.96003 0.92114 1.04469 1.20098 0.91499 0.97868 0.98697 1.20671 0.94594 0.94255 1.08237 1.19607 0.83230 0.94599 0.96087 1.20084 0.92732 0.95794 1.06776 1.19415 0.92215 0.95268 0.98306 1.20873 1.00061 0.93752 1.02603 1.86984 1.19375 1.29885 1.82097 1.23229 0.94807 0.81441 1.00002 0.86952 1.19820 0.84672 0.82436 0.83250 1.90795 1.54666 1.58275 1.34228 1.45725 1.32137 1.12826 1.45324 1.22744 0.86342 0.91754 0.97475 0.89129 1.22240 0.84437 0.96596 0.94565 1.44395 1.01888 1.09765 1.76892 1.19100 0.80059 0.98755 1.37622 0.90262 1.24839 0.98226 0.96252 1.01300 1.69807 1.32666 1.04175 1.49791 0.85998 0.84750 0.77491 0.77230 1.20507 1.21770 1.21673 1.21339 0.88342 0.91337 0.97497 1.22426 0.97182 0.94811 0.98577 0.90716 1.21745 0.99144 1.00369 0.98245 1.21728 0.90514 0.97015 1.04132 0.91384 0.91756 0.91221 0.85749 0.85257 0.90850 0.90876 0.91320 0.77186 0.86938 0.96828 0.93657 0.95816 0.95446 0.92451 0.93150 0.92760 0.88173 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 9.61 36.00 0.35 -0.31 16 2 C -0.12 -1.10 5.89 -104.56 -0.62 -1.71 16 3 C -0.06 -0.61 9.70 -39.72 -0.39 -1.00 16 4 C -0.18 -2.03 6.27 -104.10 -0.65 -2.69 16 5 C 0.11 1.51 7.04 -38.95 -0.27 1.24 16 6 C -0.14 -1.60 9.71 -39.30 -0.38 -1.98 16 7 C -0.05 -0.50 5.87 -104.72 -0.61 -1.12 16 8 C -0.12 -0.77 9.60 36.01 0.35 -0.43 16 9 O -0.27 -4.43 10.39 -39.22 -0.41 -4.84 16 10 C 0.07 0.88 4.05 -26.98 -0.11 0.77 16 11 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 12 C 0.52 8.89 7.13 -10.99 -0.08 8.81 16 13 O -0.51 -11.55 16.32 -13.50 -0.22 -11.77 16 14 N -0.71 -10.87 5.22 -51.73 -0.27 -11.14 16 15 C 0.12 2.32 2.76 -65.79 -0.18 2.14 16 16 H 0.09 1.93 7.63 -51.93 -0.40 1.54 16 17 C 0.15 3.67 5.58 -2.53 -0.01 3.66 16 18 N -0.60 -15.60 3.39 -170.07 -0.58 -16.18 16 19 C -0.23 -6.43 10.27 -15.06 -0.15 -6.59 16 20 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -27.77 10.09 55.49 0.56 -27.21 16 23 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 C 0.14 2.88 6.84 -3.06 -0.02 2.86 16 28 C -0.11 -1.79 3.17 -88.79 -0.28 -2.07 16 29 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 30 C -0.14 -1.80 9.13 37.15 0.34 -1.46 16 31 C -0.10 -0.99 6.63 -26.52 -0.18 -1.17 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 34 H 0.07 0.35 5.95 -51.93 -0.31 0.05 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.39 5.94 -51.93 -0.31 0.08 16 39 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 40 H 0.39 4.49 8.51 -40.82 -0.35 4.14 16 41 H 0.11 3.33 5.87 -51.93 -0.30 3.03 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.03 0.56 7.82 -51.93 -0.41 0.15 16 46 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 47 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.10 1.01 7.92 -51.93 -0.41 0.60 16 LS Contribution 400.32 15.07 6.03 6.03 Total: -1.00 -35.71 400.32 -10.84 -46.56 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.93 Total: 2.39 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -3.01 Total: -1.42 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.29 Total: -54.53 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.63 Total: -16.61 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.71 -10.84 -46.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080979512.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.327 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds