Wall clock time and date at job start Sat Apr 11 2020 07:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38396 * 120.11725 * 2 1 4 4 C 1.37688 * 119.98135 * 180.02562 * 3 2 1 5 5 C 1.38932 * 120.78619 * 0.25927 * 4 3 2 6 6 C 1.39247 * 118.87467 * 359.56386 * 5 4 3 7 7 C 1.37973 * 120.23869 * 0.29104 * 6 5 4 8 8 C 1.50703 * 119.82390 * 180.02562 * 7 6 5 9 9 O 1.36130 * 111.24690 * 179.38524 * 5 4 3 10 10 C 1.43758 * 109.28345 * 18.63847 * 9 5 4 11 11 H 1.09004 * 110.90509 * 90.82301 * 10 9 5 12 12 C 1.50698 * 110.74697 * 214.09473 * 10 9 5 13 13 O 1.21277 * 120.00183 * 358.38353 * 12 10 9 14 14 N 1.34774 * 120.00123 * 178.38173 * 12 10 9 15 15 C 1.46498 * 120.00321 * 180.02562 * 14 12 10 16 16 H 1.09001 * 110.88734 * 37.42672 * 15 14 12 17 17 C 1.54907 * 111.00598 * 273.54806 * 15 14 12 18 18 N 1.47420 * 104.83524 * 204.91448 * 17 15 14 19 19 C 1.36935 * 125.65209 * 204.16221 * 18 17 15 20 20 H 1.08004 * 120.00235 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99734 * 359.95746 * 19 18 17 22 22 N 1.31614 * 120.00076 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00049 * 179.97438 * 21 19 18 24 24 H 1.48511 * 109.46970 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47351 * 120.00089 * 23 21 19 26 26 H 1.48496 * 109.47101 * 240.00232 * 23 21 19 27 27 C 1.47026 * 108.70428 * 24.12518 * 18 17 15 28 28 C 1.54330 * 107.26840 * 358.94103 * 27 18 17 29 29 H 1.08998 * 110.71700 * 96.16950 * 28 27 18 30 30 C 1.52994 * 110.71826 * 219.44364 * 28 27 18 31 31 C 1.51642 * 132.19356 * 180.30308 * 4 3 2 32 32 H 1.09001 * 109.47542 * 270.02257 * 1 2 3 33 33 H 1.09005 * 109.47514 * 30.02408 * 1 2 3 34 34 H 1.09001 * 109.47152 * 150.01953 * 1 2 3 35 35 H 1.08001 * 120.00833 * 0.02562 * 3 2 1 36 36 H 1.07998 * 119.87986 * 180.31543 * 6 5 4 37 37 H 1.09003 * 109.46732 * 90.00323 * 8 7 6 38 38 H 1.09002 * 109.47236 * 210.00272 * 8 7 6 39 39 H 1.08998 * 109.47490 * 330.00024 * 8 7 6 40 40 H 0.97002 * 119.99855 * 359.97438 * 14 12 10 41 41 H 1.08997 * 110.36783 * 86.07168 * 17 15 14 42 42 H 1.08997 * 110.45914 * 323.79818 * 17 15 14 43 43 H 0.97002 * 119.99964 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.88351 * 118.35702 * 27 18 17 45 45 H 1.08998 * 109.88379 * 239.52492 * 27 18 17 46 46 H 1.08994 * 109.47458 * 58.54762 * 30 28 27 47 47 H 1.09010 * 109.46817 * 178.55144 * 30 28 27 48 48 H 1.09000 * 109.47214 * 298.54123 * 30 28 27 49 49 H 1.09004 * 110.94087 * 46.13133 * 31 4 3 50 50 H 1.08996 * 110.94319 * 282.44633 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1971 0.0000 4 6 3.5783 1.1939 -0.0005 5 6 4.2865 -0.0013 -0.0065 6 6 3.5804 -1.2015 -0.0026 7 6 2.2007 -1.1958 0.0009 8 6 1.4458 -2.5001 0.0056 9 8 5.6295 0.2211 -0.0195 10 6 5.8919 1.5675 0.4107 11 1 6.0397 1.6091 1.4898 12 6 7.0861 2.1356 -0.3119 13 8 7.6946 1.4524 -1.1080 14 7 7.4778 3.4029 -0.0735 15 6 8.6384 3.9554 -0.7764 16 1 8.6746 3.5998 -1.8061 17 6 9.9523 3.6212 -0.0270 18 7 10.8975 4.6771 -0.4331 19 6 12.2628 4.5734 -0.4222 20 1 12.8704 5.4076 -0.7407 21 6 12.8661 3.3961 -0.0015 22 7 12.1258 2.3794 0.3865 23 14 14.7286 3.2542 0.0127 24 1 15.3256 4.5263 -0.4680 25 1 15.1937 2.9802 1.3961 26 1 15.1473 2.1434 -0.8794 27 6 10.1314 5.8599 -0.8525 28 6 8.6348 5.5061 -0.7226 29 1 8.2366 5.8580 0.2290 30 6 7.8379 6.0865 -1.8925 31 6 4.5994 2.3149 0.0053 32 1 -0.3634 0.0004 1.0276 33 1 -0.3634 0.8898 -0.5142 34 1 -0.3633 -0.8902 -0.5135 35 1 1.6634 2.1336 0.0004 36 1 4.1146 -2.1401 -0.0020 37 1 1.2664 -2.8123 1.0345 38 1 0.4922 -2.3700 -0.5061 39 1 2.0327 -3.2615 -0.5081 40 1 6.9908 3.9495 0.5629 41 1 10.3236 2.6424 -0.3305 42 1 9.7935 3.6484 1.0510 43 1 12.5473 1.5569 0.6808 44 1 10.3701 6.7045 -0.2063 45 1 10.3658 6.1051 -1.8884 46 1 8.2332 5.6967 -2.8305 47 1 6.7898 5.8033 -1.7943 48 1 7.9226 7.1732 -1.8862 49 1 4.3405 3.0740 0.7435 50 1 4.6992 2.7561 -0.9864 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080979512.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:15:42 Heat of formation + Delta-G solvation = -41.058980 kcal Electronic energy + Delta-G solvation = -29999.150188 eV Core-core repulsion = 25991.260346 eV Total energy + Delta-G solvation = -4007.889841 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.47924 -40.82033 -39.41343 -38.71867 -35.75311 -34.60397 -34.12065 -32.97405 -32.23116 -31.94610 -29.63285 -27.97982 -27.67552 -27.25693 -25.41316 -24.30359 -23.06644 -22.46386 -21.67685 -21.53839 -20.93125 -18.96876 -18.68218 -18.16070 -17.77395 -17.40005 -16.91141 -16.41211 -15.96371 -15.86358 -15.59522 -15.28250 -15.03870 -14.70895 -14.55836 -14.41747 -14.28487 -14.20019 -13.95620 -13.81630 -13.66518 -13.51423 -13.39202 -13.14249 -13.09048 -12.88616 -12.87164 -12.78610 -12.62715 -12.17446 -12.14310 -12.05914 -11.85967 -11.81698 -11.65594 -11.60649 -11.42059 -10.89908 -10.80585 -10.10066 -9.71665 -8.95694 -8.92685 -7.79711 -5.26498 0.26440 0.36377 1.39184 1.42533 1.44707 1.54924 1.61644 2.41223 2.48280 2.69027 3.24204 3.30047 3.36109 3.62976 3.67929 3.82608 3.87903 3.95856 3.97902 4.02814 4.08556 4.14754 4.29035 4.45397 4.49526 4.60981 4.62730 4.65231 4.69065 4.73544 4.78403 4.82882 4.89484 4.97067 5.03890 5.05267 5.09069 5.17265 5.18371 5.26116 5.26415 5.35824 5.40448 5.44156 5.49538 5.58795 5.66671 5.75206 5.78418 6.17648 6.26029 6.49829 7.04171 7.18173 7.74573 8.36517 9.20758 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018870 B = 0.002292 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.449485 B =12214.848253 C =13468.653671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.119 4.119 3 C -0.065 4.065 4 C -0.181 4.181 5 C 0.067 3.933 6 C -0.154 4.154 7 C -0.058 4.058 8 C -0.116 4.116 9 O -0.314 6.314 10 C 0.067 3.933 11 H 0.136 0.864 12 C 0.513 3.487 13 O -0.573 6.573 14 N -0.687 5.687 15 C 0.138 3.862 16 H 0.064 0.936 17 C 0.154 3.846 18 N -0.627 5.627 19 C -0.237 4.237 20 H 0.088 0.912 21 C -0.074 4.074 22 N -0.950 5.950 23 Si 0.982 3.018 24 H -0.260 1.260 25 H -0.291 1.291 26 H -0.296 1.296 27 C 0.131 3.869 28 C -0.090 4.090 29 H 0.104 0.896 30 C -0.130 4.130 31 C -0.084 4.084 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.155 0.845 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.420 0.580 41 H 0.057 0.943 42 H -0.006 1.006 43 H 0.243 0.757 44 H 0.036 0.964 45 H 0.030 0.970 46 H 0.042 0.958 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.144 0.856 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.782 1.356 1.838 29.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.119 4.119 3 C -0.083 4.083 4 C -0.182 4.182 5 C 0.023 3.977 6 C -0.173 4.173 7 C -0.058 4.058 8 C -0.172 4.172 9 O -0.228 6.228 10 C 0.007 3.993 11 H 0.153 0.847 12 C 0.298 3.702 13 O -0.451 6.451 14 N -0.340 5.340 15 C 0.032 3.968 16 H 0.082 0.918 17 C 0.028 3.972 18 N -0.354 5.354 19 C -0.366 4.366 20 H 0.106 0.894 21 C -0.267 4.267 22 N -0.600 5.600 23 Si 0.810 3.190 24 H -0.184 1.184 25 H -0.218 1.218 26 H -0.224 1.224 27 C 0.006 3.994 28 C -0.109 4.109 29 H 0.123 0.877 30 C -0.188 4.188 31 C -0.120 4.120 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.173 0.827 36 H 0.141 0.859 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.258 0.742 41 H 0.075 0.925 42 H 0.012 0.988 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.048 0.952 46 H 0.061 0.939 47 H 0.094 0.906 48 H 0.097 0.903 49 H 0.162 0.838 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -28.999 0.626 1.244 29.032 hybrid contribution 1.883 -0.433 0.373 1.967 sum -27.116 0.193 1.617 27.165 Atomic orbital electron populations 1.20840 0.88324 1.03962 1.03321 1.20052 0.97847 0.91598 1.02397 1.20487 0.90730 0.99425 0.97624 1.20875 0.95513 0.93534 1.08252 1.19968 0.82451 0.96355 0.98941 1.20333 0.93990 0.95347 1.07651 1.19788 0.91385 0.97158 0.97482 1.20945 1.00431 0.92209 1.03581 1.86918 1.21490 1.31293 1.83121 1.23310 0.94449 0.81230 1.00275 0.84659 1.20635 0.85103 0.82200 0.82245 1.90765 1.57076 1.59982 1.37323 1.45442 1.30779 1.12668 1.45125 1.22200 0.84983 0.94334 0.95312 0.91824 1.21885 0.87242 0.94296 0.93824 1.44706 1.01777 1.11953 1.76929 1.19544 0.81804 0.98826 1.36425 0.89427 1.25760 1.02874 0.96150 1.01868 1.70141 1.34173 1.04409 1.51253 0.84946 0.79407 0.77800 0.76813 1.18384 1.21797 1.22353 1.21638 0.90508 0.89731 0.97493 1.22380 0.95022 0.91733 1.01766 0.87750 1.21712 0.99764 1.01621 0.95681 1.21758 0.87931 0.97105 1.05250 0.90094 0.90479 0.90143 0.82733 0.85897 0.89708 0.88988 0.91444 0.74227 0.92453 0.98830 0.94715 0.94577 0.95194 0.93931 0.90561 0.90255 0.83836 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.61 71.23 0.68 -0.20 16 2 C -0.12 -1.84 5.89 -19.83 -0.12 -1.95 16 3 C -0.06 -1.06 9.70 22.18 0.22 -0.84 16 4 C -0.18 -3.90 6.27 -19.53 -0.12 -4.03 16 5 C 0.07 1.91 7.04 22.68 0.16 2.07 16 6 C -0.15 -3.80 9.71 22.45 0.22 -3.58 16 7 C -0.06 -1.06 5.87 -19.93 -0.12 -1.17 16 8 C -0.12 -1.33 9.60 71.24 0.68 -0.65 16 9 O -0.31 -10.95 10.39 -76.80 -0.80 -11.75 16 10 C 0.07 1.81 4.05 30.43 0.12 1.94 16 11 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 12 C 0.51 18.33 7.13 87.66 0.63 18.95 16 13 O -0.57 -28.21 16.32 15.21 0.25 -27.96 16 14 N -0.69 -20.79 5.22 -435.98 -2.28 -23.07 16 15 C 0.14 5.35 2.76 46.38 0.13 5.47 16 16 H 0.06 2.85 7.63 -2.39 -0.02 2.83 16 17 C 0.15 8.05 5.58 86.86 0.48 8.54 16 18 N -0.63 -33.25 3.39 -691.99 -2.35 -35.60 16 19 C -0.24 -13.73 10.27 84.03 0.86 -12.87 16 20 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 21 C -0.07 -4.44 5.49 84.86 0.47 -3.98 16 22 N -0.95 -60.97 10.09 21.65 0.22 -60.75 16 23 Si 0.98 47.88 29.55 68.60 2.03 49.91 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 27 C 0.13 5.22 6.84 86.73 0.59 5.81 16 28 C -0.09 -2.70 3.17 -9.61 -0.03 -2.73 16 29 H 0.10 2.58 8.00 -2.39 -0.02 2.56 16 30 C -0.13 -2.94 9.13 71.98 0.66 -2.29 16 31 C -0.08 -1.54 6.63 30.73 0.20 -1.33 16 32 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 0.47 8.09 -2.38 -0.02 0.45 16 34 H 0.08 0.50 5.95 -2.39 -0.01 0.49 16 35 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.12 2.96 8.06 -2.91 -0.02 2.93 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.09 0.71 5.94 -2.39 -0.01 0.69 16 39 H 0.07 0.79 8.08 -2.39 -0.02 0.77 16 40 H 0.42 8.44 8.51 -92.71 -0.79 7.65 16 41 H 0.06 3.67 5.87 -2.39 -0.01 3.65 16 42 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.24 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 45 H 0.03 1.18 7.82 -2.39 -0.02 1.16 16 46 H 0.04 1.10 8.13 -2.39 -0.02 1.08 16 47 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 48 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.09 1.79 7.92 -2.39 -0.02 1.77 16 Total: -1.00 -87.09 400.32 2.95 -84.14 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.16 Total: 17.93 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 5.72 Total: 7.15 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -4.41 Total: -119.42 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -0.55 Total: -39.71 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -87.09 2.95 -84.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080979512.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.084 kcal (2) G-P(sol) polarization free energy of solvation -87.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds