Wall clock time and date at job start Sat Apr 11 2020 07:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38400 * 120.11875 * 2 1 4 4 C 1.37692 * 119.97793 * 179.97438 * 3 2 1 5 5 C 1.38922 * 120.79489 * 359.71148 * 4 3 2 6 6 C 1.39247 * 118.86684 * 0.44488 * 5 4 3 7 7 C 1.37974 * 120.24486 * 359.69678 * 6 5 4 8 8 C 1.50698 * 119.82503 * 180.02562 * 7 6 5 9 9 O 1.36126 * 111.24834 * 180.48764 * 5 4 3 10 10 C 1.43766 * 109.28353 * 341.37544 * 9 5 4 11 11 H 1.09000 * 110.75047 * 269.05640 * 10 9 5 12 12 C 1.50700 * 110.74454 * 145.89327 * 10 9 5 13 13 O 1.21283 * 120.00098 * 356.45388 * 12 10 9 14 14 N 1.34779 * 119.99858 * 176.45442 * 12 10 9 15 15 C 1.46503 * 119.99751 * 180.02562 * 14 12 10 16 16 H 1.08998 * 110.64263 * 31.86099 * 15 14 12 17 17 C 1.54339 * 111.00122 * 268.77738 * 15 14 12 18 18 N 1.47021 * 107.26633 * 219.60175 * 17 15 14 19 19 C 1.36931 * 125.64962 * 178.85047 * 18 17 15 20 20 H 1.08002 * 120.00438 * 179.69777 * 19 18 17 21 21 C 1.38817 * 119.99680 * 359.41735 * 19 18 17 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48496 * 109.47141 * 59.99751 * 23 21 19 25 25 H 1.48490 * 109.47071 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46993 * 300.00028 * 23 21 19 27 27 C 1.47426 * 108.70417 * 358.58904 * 18 17 15 28 28 C 1.54919 * 104.83230 * 24.35268 * 27 18 17 29 29 H 1.09005 * 110.99977 * 81.10519 * 28 27 18 30 30 C 1.52995 * 111.00455 * 204.91772 * 28 27 18 31 31 C 1.51646 * 132.17868 * 179.51809 * 4 3 2 32 32 H 1.09004 * 109.46853 * 89.99514 * 1 2 3 33 33 H 1.08992 * 109.47264 * 210.00098 * 1 2 3 34 34 H 1.08997 * 109.47033 * 330.00138 * 1 2 3 35 35 H 1.08002 * 120.00836 * 359.95069 * 3 2 1 36 36 H 1.08000 * 119.88323 * 179.68878 * 6 5 4 37 37 H 1.09000 * 109.47242 * 269.97054 * 8 7 6 38 38 H 1.08991 * 109.47210 * 29.97256 * 8 7 6 39 39 H 1.09007 * 109.46889 * 149.97448 * 8 7 6 40 40 H 0.97001 * 120.00143 * 0.02562 * 14 12 10 41 41 H 1.09000 * 109.98868 * 100.12723 * 17 15 14 42 42 H 1.09001 * 109.77953 * 338.95906 * 17 15 14 43 43 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 44 44 H 1.09003 * 110.37118 * 143.18886 * 27 18 17 45 45 H 1.09001 * 110.36564 * 265.51518 * 27 18 17 46 46 H 1.08996 * 109.47157 * 58.54463 * 30 28 27 47 47 H 1.09002 * 109.47021 * 178.54810 * 30 28 27 48 48 H 1.09005 * 109.47154 * 298.54608 * 30 28 27 49 49 H 1.09004 * 110.93859 * 77.70040 * 31 4 3 50 50 H 1.09002 * 110.94170 * 314.01039 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2015 1.1971 0.0000 4 6 3.5784 1.1938 0.0005 5 6 4.2867 -0.0013 0.0071 6 6 3.5804 -1.2014 0.0037 7 6 2.2007 -1.1958 0.0002 8 6 1.4459 -2.5001 -0.0029 9 8 5.6296 0.2212 0.0172 10 6 5.8912 1.5670 -0.4154 11 1 6.0385 1.6040 -1.4948 12 6 7.0866 2.1363 0.3043 13 8 7.6397 1.4885 1.1677 14 7 7.5410 3.3652 -0.0115 15 6 8.7035 3.9183 0.6878 16 1 9.3935 3.1245 0.9737 17 6 8.2692 4.7298 1.9268 18 7 9.1327 5.9177 1.9950 19 6 9.0559 6.9070 2.9386 20 1 9.7424 7.7401 2.9048 21 6 8.0919 6.8421 3.9354 22 7 7.2552 5.8270 3.9765 23 14 7.9821 8.1956 5.2181 24 1 7.7174 9.4935 4.5469 25 1 6.8783 7.8927 6.1641 26 1 9.2640 8.2762 5.9635 27 6 10.0990 5.8643 0.8829 28 6 9.4195 4.9780 -0.1907 29 1 8.7005 5.5532 -0.7741 30 6 10.4608 4.3232 -1.1005 31 6 4.5994 2.3150 -0.0088 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3633 -0.8899 0.5138 34 1 -0.3633 0.8900 0.5138 35 1 1.6635 2.1337 -0.0008 36 1 4.1145 -2.1401 0.0036 37 1 1.2660 -2.8134 -1.0313 38 1 2.0331 -3.2609 0.5112 39 1 0.4925 -2.3693 0.5091 40 1 7.0984 3.8834 -0.7017 41 1 8.3931 4.1291 2.8278 42 1 7.2277 5.0340 1.8219 43 1 6.5818 5.7814 4.6732 44 1 10.2806 6.8645 0.4896 45 1 11.0332 5.4104 1.2137 46 1 11.1410 3.7203 -0.4990 47 1 9.9581 3.6865 -1.8286 48 1 11.0250 5.0963 -1.6222 49 1 4.7009 2.7576 0.9822 50 1 4.3390 3.0729 -0.7476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080979513.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:15:48 Heat of formation + Delta-G solvation = -19.979633 kcal Electronic energy + Delta-G solvation = -30132.918523 eV Core-core repulsion = 26125.942751 eV Total energy + Delta-G solvation = -4006.975772 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.45298 -39.47825 -38.26908 -37.28606 -34.03947 -33.41418 -32.69686 -32.16077 -31.04940 -30.38758 -28.15024 -27.09461 -26.65611 -25.62339 -23.93718 -23.13447 -22.18966 -20.99924 -20.49011 -20.02394 -19.60704 -17.55594 -17.20779 -16.88980 -16.72046 -15.84556 -15.39456 -15.05344 -14.92023 -14.57581 -14.35129 -14.14355 -13.85397 -13.61200 -13.32637 -13.22470 -13.03939 -12.95815 -12.84116 -12.79127 -12.63421 -12.43168 -12.21342 -12.04714 -11.82012 -11.72909 -11.50410 -11.36835 -11.04055 -10.98700 -10.77113 -10.74707 -10.64591 -10.44248 -10.01526 -9.96748 -9.71592 -9.50014 -8.87171 -8.64344 -8.53840 -8.06435 -6.84940 -5.70014 -3.05300 1.11870 1.23742 2.65955 2.80520 3.40625 3.44388 3.45086 3.46753 3.68746 4.26745 4.37567 4.49969 4.64221 4.69950 4.78137 4.86033 4.88920 5.01707 5.06447 5.15895 5.27611 5.29053 5.34628 5.41623 5.44648 5.50212 5.53856 5.56314 5.62112 5.71380 5.73114 5.78913 5.95884 5.97161 5.99825 6.12654 6.12701 6.16634 6.28375 6.31898 6.41453 6.45795 6.52740 6.60592 6.69827 6.90217 7.07863 7.51869 7.55984 7.78766 7.83660 8.24338 8.44842 9.20708 9.81500 10.46174 11.40584 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.002645 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.273754 B =10583.407607 C =12179.857821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.119 4.119 3 C -0.063 4.063 4 C -0.171 4.171 5 C 0.108 3.892 6 C -0.135 4.135 7 C -0.054 4.054 8 C -0.116 4.116 9 O -0.274 6.274 10 C 0.066 3.934 11 H 0.109 0.891 12 C 0.517 3.483 13 O -0.514 6.514 14 N -0.705 5.705 15 C 0.120 3.880 16 H 0.090 0.910 17 C 0.173 3.827 18 N -0.606 5.606 19 C -0.231 4.231 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.141 3.859 28 C -0.113 4.113 29 H 0.078 0.922 30 C -0.137 4.137 31 C -0.099 4.099 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.397 0.603 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.253 0.747 44 H 0.043 0.957 45 H 0.022 0.978 46 H 0.055 0.945 47 H 0.049 0.951 48 H 0.054 0.946 49 H 0.103 0.897 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.069 -11.681 -15.145 22.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.120 4.120 3 C -0.082 4.082 4 C -0.172 4.172 5 C 0.062 3.938 6 C -0.154 4.154 7 C -0.054 4.054 8 C -0.172 4.172 9 O -0.187 6.187 10 C 0.006 3.994 11 H 0.127 0.873 12 C 0.300 3.700 13 O -0.388 6.388 14 N -0.357 5.357 15 C 0.016 3.984 16 H 0.108 0.892 17 C 0.047 3.953 18 N -0.332 5.332 19 C -0.359 4.359 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.014 3.986 28 C -0.133 4.133 29 H 0.096 0.904 30 C -0.195 4.195 31 C -0.136 4.136 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.231 0.769 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.040 0.960 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.121 0.879 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.597 -12.263 -14.233 21.570 hybrid contribution -0.263 1.179 0.415 1.278 sum -10.860 -11.083 -13.818 20.778 Atomic orbital electron populations 1.20760 0.90906 1.02823 1.02121 1.19580 0.96022 0.92096 1.04268 1.20141 0.91579 0.97973 0.98459 1.20683 0.94633 0.94245 1.07602 1.19562 0.83091 0.94607 0.96496 1.20037 0.92717 0.95601 1.07035 1.19396 0.92219 0.95235 0.98595 1.20860 1.00100 0.93744 1.02488 1.86931 1.19588 1.29830 1.82304 1.23191 0.95155 0.81618 0.99413 0.87329 1.19864 0.84408 0.82131 0.83604 1.90764 1.57614 1.59473 1.30951 1.45760 1.32758 1.16396 1.40786 1.22560 0.85924 0.95718 0.94211 0.89205 1.21476 0.94840 0.86710 0.92248 1.44395 1.35852 1.23513 1.29488 1.18997 1.13520 0.99640 1.03778 0.90361 1.24827 0.98161 0.98244 0.99156 1.69955 1.21255 1.30310 1.35102 0.86197 0.77223 0.81075 0.81237 1.21194 1.21611 1.21140 1.21589 0.92658 0.96655 0.87695 1.22619 0.97686 0.96650 0.96346 0.90390 1.21701 0.98619 1.00143 0.99062 1.21750 0.90061 0.96890 1.04890 0.91410 0.91228 0.91654 0.85615 0.85396 0.90946 0.91391 0.90865 0.76923 0.93465 0.93040 0.93678 0.93894 0.96013 0.92586 0.93141 0.92689 0.87880 0.88113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 9.61 36.01 0.35 -0.44 16 2 C -0.12 -1.21 5.89 -104.56 -0.62 -1.83 16 3 C -0.06 -0.71 9.70 -39.72 -0.39 -1.09 16 4 C -0.17 -2.21 6.27 -104.10 -0.65 -2.87 16 5 C 0.11 1.54 7.04 -38.95 -0.27 1.27 16 6 C -0.14 -1.65 9.71 -39.30 -0.38 -2.03 16 7 C -0.05 -0.56 5.87 -104.72 -0.61 -1.18 16 8 C -0.12 -0.82 9.60 36.00 0.35 -0.48 16 9 O -0.27 -4.45 10.39 -39.18 -0.41 -4.86 16 10 C 0.07 0.90 4.05 -26.98 -0.11 0.79 16 11 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 12 C 0.52 8.83 7.12 -10.98 -0.08 8.75 16 13 O -0.51 -11.39 16.22 -13.49 -0.22 -11.61 16 14 N -0.71 -10.92 5.12 -52.02 -0.27 -11.19 16 15 C 0.12 2.26 2.77 -66.09 -0.18 2.08 16 16 H 0.09 1.83 7.42 -51.93 -0.39 1.44 16 17 C 0.17 4.25 5.14 -3.06 -0.02 4.23 16 18 N -0.61 -15.39 3.39 -170.06 -0.58 -15.96 16 19 C -0.23 -6.44 10.28 -15.06 -0.15 -6.59 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 22 N -0.92 -27.37 10.31 55.49 0.57 -26.80 16 23 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.14 2.81 6.70 -2.52 -0.02 2.80 16 28 C -0.11 -1.83 3.27 -88.47 -0.29 -2.12 16 29 H 0.08 1.19 8.01 -51.93 -0.42 0.77 16 30 C -0.14 -1.78 9.29 37.16 0.35 -1.44 16 31 C -0.10 -1.22 6.64 -26.52 -0.18 -1.40 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.42 5.95 -51.93 -0.31 0.11 16 34 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 39 H 0.07 0.44 5.94 -51.93 -0.31 0.13 16 40 H 0.40 4.75 8.57 -40.82 -0.35 4.40 16 41 H 0.05 1.37 7.53 -51.93 -0.39 0.97 16 42 H 0.05 1.37 7.25 -51.93 -0.38 1.00 16 43 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.02 0.44 8.04 -51.93 -0.42 0.02 16 46 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.10 1.51 7.92 -51.93 -0.41 1.09 16 50 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 400.86 15.07 6.04 6.04 Total: -1.00 -35.06 400.86 -10.86 -45.92 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.98 Total: 3.08 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -3.01 Total: -1.84 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.27 Total: -53.95 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.63 Total: -16.47 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.06 -10.86 -45.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080979513.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.939 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds