Wall clock time and date at job start Sat Apr 11 2020 07:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38400 * 120.11875 * 2 1 4 4 C 1.37692 * 119.97793 * 179.97438 * 3 2 1 5 5 C 1.38922 * 120.79489 * 359.71148 * 4 3 2 6 6 C 1.39247 * 118.86684 * 0.44488 * 5 4 3 7 7 C 1.37974 * 120.24486 * 359.69678 * 6 5 4 8 8 C 1.50698 * 119.82503 * 180.02562 * 7 6 5 9 9 O 1.36126 * 111.24834 * 180.48764 * 5 4 3 10 10 C 1.43766 * 109.28353 * 341.37544 * 9 5 4 11 11 H 1.09000 * 110.75047 * 269.05640 * 10 9 5 12 12 C 1.50700 * 110.74454 * 145.89327 * 10 9 5 13 13 O 1.21283 * 120.00098 * 356.45388 * 12 10 9 14 14 N 1.34779 * 119.99858 * 176.45442 * 12 10 9 15 15 C 1.46503 * 119.99751 * 180.02562 * 14 12 10 16 16 H 1.08998 * 110.64263 * 31.86099 * 15 14 12 17 17 C 1.54339 * 111.00122 * 268.77738 * 15 14 12 18 18 N 1.47021 * 107.26633 * 219.60175 * 17 15 14 19 19 C 1.36931 * 125.64962 * 178.85047 * 18 17 15 20 20 H 1.08002 * 120.00438 * 179.69777 * 19 18 17 21 21 C 1.38817 * 119.99680 * 359.41735 * 19 18 17 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48496 * 109.47141 * 59.99751 * 23 21 19 25 25 H 1.48490 * 109.47071 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46993 * 300.00028 * 23 21 19 27 27 C 1.47426 * 108.70417 * 358.58904 * 18 17 15 28 28 C 1.54919 * 104.83230 * 24.35268 * 27 18 17 29 29 H 1.09005 * 110.99977 * 81.10519 * 28 27 18 30 30 C 1.52995 * 111.00455 * 204.91772 * 28 27 18 31 31 C 1.51646 * 132.17868 * 179.51809 * 4 3 2 32 32 H 1.09004 * 109.46853 * 89.99514 * 1 2 3 33 33 H 1.08992 * 109.47264 * 210.00098 * 1 2 3 34 34 H 1.08997 * 109.47033 * 330.00138 * 1 2 3 35 35 H 1.08002 * 120.00836 * 359.95069 * 3 2 1 36 36 H 1.08000 * 119.88323 * 179.68878 * 6 5 4 37 37 H 1.09000 * 109.47242 * 269.97054 * 8 7 6 38 38 H 1.08991 * 109.47210 * 29.97256 * 8 7 6 39 39 H 1.09007 * 109.46889 * 149.97448 * 8 7 6 40 40 H 0.97001 * 120.00143 * 0.02562 * 14 12 10 41 41 H 1.09000 * 109.98868 * 100.12723 * 17 15 14 42 42 H 1.09001 * 109.77953 * 338.95906 * 17 15 14 43 43 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 44 44 H 1.09003 * 110.37118 * 143.18886 * 27 18 17 45 45 H 1.09001 * 110.36564 * 265.51518 * 27 18 17 46 46 H 1.08996 * 109.47157 * 58.54463 * 30 28 27 47 47 H 1.09002 * 109.47021 * 178.54810 * 30 28 27 48 48 H 1.09005 * 109.47154 * 298.54608 * 30 28 27 49 49 H 1.09004 * 110.93859 * 77.70040 * 31 4 3 50 50 H 1.09002 * 110.94170 * 314.01039 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2015 1.1971 0.0000 4 6 3.5784 1.1938 0.0005 5 6 4.2867 -0.0013 0.0071 6 6 3.5804 -1.2014 0.0037 7 6 2.2007 -1.1958 0.0002 8 6 1.4459 -2.5001 -0.0029 9 8 5.6296 0.2212 0.0172 10 6 5.8912 1.5670 -0.4154 11 1 6.0385 1.6040 -1.4948 12 6 7.0866 2.1363 0.3043 13 8 7.6397 1.4885 1.1677 14 7 7.5410 3.3652 -0.0115 15 6 8.7035 3.9183 0.6878 16 1 9.3935 3.1245 0.9737 17 6 8.2692 4.7298 1.9268 18 7 9.1327 5.9177 1.9950 19 6 9.0559 6.9070 2.9386 20 1 9.7424 7.7401 2.9048 21 6 8.0919 6.8421 3.9354 22 7 7.2552 5.8270 3.9765 23 14 7.9821 8.1956 5.2181 24 1 7.7174 9.4935 4.5469 25 1 6.8783 7.8927 6.1641 26 1 9.2640 8.2762 5.9635 27 6 10.0990 5.8643 0.8829 28 6 9.4195 4.9780 -0.1907 29 1 8.7005 5.5532 -0.7741 30 6 10.4608 4.3232 -1.1005 31 6 4.5994 2.3150 -0.0088 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3633 -0.8899 0.5138 34 1 -0.3633 0.8900 0.5138 35 1 1.6635 2.1337 -0.0008 36 1 4.1145 -2.1401 0.0036 37 1 1.2660 -2.8134 -1.0313 38 1 2.0331 -3.2609 0.5112 39 1 0.4925 -2.3693 0.5091 40 1 7.0984 3.8834 -0.7017 41 1 8.3931 4.1291 2.8278 42 1 7.2277 5.0340 1.8219 43 1 6.5818 5.7814 4.6732 44 1 10.2806 6.8645 0.4896 45 1 11.0332 5.4104 1.2137 46 1 11.1410 3.7203 -0.4990 47 1 9.9581 3.6865 -1.8286 48 1 11.0250 5.0963 -1.6222 49 1 4.7009 2.7576 0.9822 50 1 4.3390 3.0729 -0.7476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080979513.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:15:47 Heat of formation + Delta-G solvation = -41.855405 kcal Electronic energy + Delta-G solvation = -30133.867128 eV Core-core repulsion = 26125.942751 eV Total energy + Delta-G solvation = -4007.924377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.49607 -40.84996 -39.42299 -38.72681 -35.72778 -34.59105 -34.13642 -32.99392 -32.23591 -31.95588 -29.68654 -27.97582 -27.70331 -27.26021 -25.42335 -24.30801 -23.08320 -22.49468 -21.67656 -21.52169 -21.00149 -18.91881 -18.75962 -18.19799 -17.80251 -17.26025 -16.89024 -16.52682 -15.96689 -15.81560 -15.62946 -15.31519 -15.06515 -14.82578 -14.69191 -14.47881 -14.29772 -14.10196 -13.85350 -13.77072 -13.66728 -13.52574 -13.35491 -13.16772 -13.07063 -12.90849 -12.86213 -12.81167 -12.58816 -12.27007 -12.16434 -12.08112 -11.87789 -11.84639 -11.67960 -11.63289 -11.49087 -10.92404 -10.75219 -10.11119 -9.73665 -8.97643 -8.94538 -7.86121 -5.24020 0.24222 0.34423 1.37584 1.43272 1.47374 1.53417 1.55154 2.43424 2.48932 2.65903 3.21872 3.32211 3.35791 3.57425 3.69954 3.77719 3.84917 3.90236 3.95878 4.03172 4.09144 4.12483 4.27528 4.41676 4.47340 4.56703 4.60530 4.66512 4.71019 4.72501 4.78136 4.81015 4.87634 4.95623 5.03788 5.05204 5.06585 5.13643 5.16138 5.24439 5.27459 5.33824 5.38440 5.42907 5.49211 5.56702 5.63790 5.71847 5.75122 6.14495 6.15166 6.45481 7.03983 7.13455 7.74088 8.37734 9.22720 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.002645 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.273754 B =10583.407607 C =12179.857821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.119 4.119 3 C -0.071 4.071 4 C -0.184 4.184 5 C 0.073 3.927 6 C -0.148 4.148 7 C -0.057 4.057 8 C -0.114 4.114 9 O -0.308 6.308 10 C 0.073 3.927 11 H 0.154 0.846 12 C 0.514 3.486 13 O -0.574 6.574 14 N -0.687 5.687 15 C 0.135 3.865 16 H 0.071 0.929 17 C 0.188 3.812 18 N -0.627 5.627 19 C -0.242 4.242 20 H 0.089 0.911 21 C -0.070 4.070 22 N -0.952 5.952 23 Si 0.981 3.019 24 H -0.270 1.270 25 H -0.298 1.298 26 H -0.279 1.279 27 C 0.131 3.869 28 C -0.091 4.091 29 H 0.099 0.901 30 C -0.130 4.130 31 C -0.093 4.093 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.145 0.855 36 H 0.132 0.868 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.419 0.581 41 H -0.015 1.015 42 H 0.023 0.977 43 H 0.244 0.756 44 H 0.059 0.941 45 H 0.023 0.977 46 H 0.046 0.954 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.071 0.929 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.443 -11.011 -17.995 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.185 4.185 5 C 0.028 3.972 6 C -0.167 4.167 7 C -0.057 4.057 8 C -0.170 4.170 9 O -0.222 6.222 10 C 0.014 3.986 11 H 0.171 0.829 12 C 0.300 3.700 13 O -0.453 6.453 14 N -0.340 5.340 15 C 0.029 3.971 16 H 0.090 0.910 17 C 0.061 3.939 18 N -0.354 5.354 19 C -0.371 4.371 20 H 0.107 0.893 21 C -0.263 4.263 22 N -0.601 5.601 23 Si 0.808 3.192 24 H -0.196 1.196 25 H -0.225 1.225 26 H -0.205 1.205 27 C 0.006 3.994 28 C -0.111 4.111 29 H 0.117 0.883 30 C -0.188 4.188 31 C -0.130 4.130 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.163 0.837 36 H 0.150 0.850 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.257 0.743 41 H 0.003 0.997 42 H 0.041 0.959 43 H 0.053 0.947 44 H 0.077 0.923 45 H 0.041 0.959 46 H 0.066 0.934 47 H 0.090 0.910 48 H 0.098 0.902 49 H 0.089 0.911 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.963 -11.558 -17.156 23.896 hybrid contribution 0.151 0.929 1.332 1.631 sum -11.812 -10.629 -15.824 22.425 Atomic orbital electron populations 1.20842 0.88413 1.03819 1.03404 1.20035 0.97825 0.91579 1.02465 1.20475 0.90989 0.99410 0.98036 1.20823 0.95449 0.93717 1.08500 1.19898 0.82467 0.95998 0.98802 1.20340 0.93778 0.95319 1.07266 1.19817 0.91612 0.96981 0.97272 1.20944 1.00330 0.92002 1.03761 1.86866 1.21129 1.30921 1.83264 1.23311 0.93532 0.80952 1.00838 0.82933 1.20628 0.84762 0.81918 0.82720 1.90734 1.59717 1.61140 1.33673 1.45517 1.31870 1.16140 1.40469 1.22115 0.86754 0.95160 0.93089 0.91049 1.21104 0.93639 0.86500 0.92626 1.44718 1.36995 1.23045 1.30639 1.19474 1.13139 1.00231 1.04210 0.89322 1.25732 0.98307 1.00655 1.01587 1.70227 1.21961 1.32372 1.35573 0.85121 0.76880 0.78711 0.78443 1.19567 1.22468 1.20462 1.21875 0.91852 0.98449 0.87224 1.22547 0.98285 0.94843 0.95402 0.88324 1.21666 0.97672 1.00830 0.98596 1.21731 0.89519 0.97516 1.04218 0.89824 0.89881 0.91082 0.83725 0.84965 0.89357 0.91108 0.89277 0.74344 0.99661 0.95862 0.94734 0.92311 0.95930 0.93436 0.90995 0.90241 0.91094 0.84342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.61 71.24 0.68 -0.53 16 2 C -0.12 -2.19 5.89 -19.82 -0.12 -2.31 16 3 C -0.07 -1.50 9.70 22.18 0.22 -1.29 16 4 C -0.18 -4.76 6.27 -19.53 -0.12 -4.88 16 5 C 0.07 2.14 7.04 22.68 0.16 2.30 16 6 C -0.15 -3.66 9.71 22.45 0.22 -3.44 16 7 C -0.06 -1.10 5.87 -19.93 -0.12 -1.21 16 8 C -0.11 -1.36 9.60 71.24 0.68 -0.67 16 9 O -0.31 -10.45 10.39 -76.78 -0.80 -11.25 16 10 C 0.07 1.98 4.05 30.43 0.12 2.11 16 11 H 0.15 2.76 8.14 -2.39 -0.02 2.74 16 12 C 0.51 18.21 7.12 87.66 0.62 18.83 16 13 O -0.57 -27.27 16.22 15.17 0.25 -27.03 16 14 N -0.69 -21.29 5.12 -436.88 -2.24 -23.53 16 15 C 0.13 5.18 2.77 46.19 0.13 5.31 16 16 H 0.07 3.05 7.42 -2.39 -0.02 3.03 16 17 C 0.19 9.76 5.14 86.73 0.45 10.21 16 18 N -0.63 -32.67 3.39 -691.93 -2.35 -35.02 16 19 C -0.24 -13.70 10.28 84.04 0.86 -12.83 16 20 H 0.09 4.71 7.83 -2.91 -0.02 4.68 16 21 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16 22 N -0.95 -59.82 10.31 21.65 0.22 -59.60 16 23 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 25 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 27 C 0.13 5.13 6.70 86.86 0.58 5.72 16 28 C -0.09 -2.77 3.27 -9.40 -0.03 -2.81 16 29 H 0.10 2.66 8.01 -2.38 -0.02 2.64 16 30 C -0.13 -2.95 9.29 71.98 0.67 -2.28 16 31 C -0.09 -2.30 6.64 30.73 0.20 -2.09 16 32 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 0.72 5.95 -2.39 -0.01 0.71 16 34 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 35 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.13 2.96 8.06 -2.91 -0.02 2.93 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 39 H 0.09 0.78 5.94 -2.38 -0.01 0.77 16 40 H 0.42 9.26 8.57 -92.71 -0.79 8.47 16 41 H -0.01 -0.94 7.53 -2.39 -0.02 -0.96 16 42 H 0.02 1.32 7.25 -2.39 -0.02 1.30 16 43 H 0.24 15.06 8.31 -92.70 -0.77 14.29 16 44 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.02 0.90 8.04 -2.39 -0.02 0.88 16 46 H 0.05 1.18 8.11 -2.39 -0.02 1.16 16 47 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 49 H 0.07 2.21 7.92 -2.38 -0.02 2.19 16 50 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -84.07 400.86 2.95 -81.12 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.15 Total: 20.03 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 5.68 Total: 6.50 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -4.36 Total: -118.14 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -0.55 Total: -38.27 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -84.07 2.95 -81.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080979513.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.267 kcal (2) G-P(sol) polarization free energy of solvation -84.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds