Wall clock time and date at job start Sat Apr 11 2020 07:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38258 * 119.99891 * 2 1 4 4 C 1.38217 * 119.99947 * 179.83517 * 3 2 1 5 5 C 1.38251 * 120.00122 * 0.39195 * 4 3 2 6 6 C 1.38215 * 119.99982 * 359.54000 * 5 4 3 7 7 C 1.50694 * 120.00148 * 180.25720 * 6 5 4 8 8 C 1.50698 * 112.85276 * 113.93365 * 7 6 5 9 9 O 1.21283 * 119.99937 * 123.08579 * 8 7 6 10 10 N 1.34780 * 120.00139 * 303.08751 * 8 7 6 11 11 C 1.46499 * 120.00113 * 184.87331 * 10 8 7 12 12 H 1.08996 * 110.88643 * 34.29866 * 11 10 8 13 13 C 1.54909 * 111.00387 * 270.41899 * 11 10 8 14 14 N 1.47466 * 104.81163 * 204.94674 * 13 11 10 15 15 C 1.36935 * 125.63113 * 204.06448 * 14 13 11 16 16 H 1.08000 * 119.99560 * 359.97438 * 15 14 13 17 17 C 1.38816 * 120.00119 * 179.97438 * 15 14 13 18 18 N 1.31616 * 119.99638 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 119.99912 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47162 * 90.00559 * 19 17 15 21 21 H 1.48506 * 109.47195 * 210.00027 * 19 17 15 22 22 H 1.48496 * 109.47597 * 330.00523 * 19 17 15 23 23 C 1.47025 * 108.72076 * 24.07558 * 14 13 11 24 24 C 1.54329 * 107.27166 * 358.96665 * 23 14 13 25 25 H 1.08996 * 110.72163 * 219.44806 * 24 23 14 26 26 O 1.42902 * 110.86744 * 96.24482 * 24 23 14 27 27 C 1.53788 * 113.61380 * 342.73474 * 7 6 5 28 28 C 1.53954 * 87.02168 * 220.04923 * 27 7 6 29 29 C 1.53781 * 87.10965 * 25.36447 * 28 27 7 30 30 C 1.38212 * 120.00380 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47293 * 270.02550 * 1 2 3 32 32 H 1.08994 * 109.47562 * 30.03005 * 1 2 3 33 33 H 1.09002 * 109.46758 * 150.02618 * 1 2 3 34 34 H 1.07999 * 119.99978 * 359.97438 * 3 2 1 35 35 H 1.07999 * 119.99542 * 180.20601 * 4 3 2 36 36 H 1.07996 * 120.00180 * 179.81342 * 5 4 3 37 37 H 0.97002 * 119.99786 * 4.87606 * 10 8 7 38 38 H 1.08999 * 110.36422 * 323.75390 * 13 11 10 39 39 H 1.08998 * 110.36884 * 86.07732 * 13 11 10 40 40 H 0.97003 * 119.99710 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.87780 * 239.55536 * 23 14 13 42 42 H 1.08999 * 110.01373 * 118.46057 * 23 14 13 43 43 H 0.96700 * 113.99614 * 66.39368 * 26 24 23 44 44 H 1.08997 * 113.61275 * 334.57592 * 27 7 6 45 45 H 1.08999 * 113.60887 * 105.47368 * 27 7 6 46 46 H 1.08994 * 113.53865 * 270.81272 * 28 27 7 47 47 H 1.08999 * 113.66205 * 139.93188 * 28 27 7 48 48 H 1.09007 * 113.61397 * 220.09051 * 29 28 27 49 49 H 1.09000 * 113.69434 * 89.19805 * 29 28 27 50 50 H 1.07997 * 119.99869 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0034 5 6 4.2717 0.0001 -0.0013 6 6 3.5807 -1.1969 0.0001 7 6 4.3342 -2.5019 0.0008 8 6 4.1397 -3.2894 1.2709 9 8 3.7069 -4.4213 1.2223 10 7 4.4466 -2.7357 2.4608 11 6 4.3593 -3.5354 3.6851 12 1 4.6328 -4.5727 3.4921 13 6 2.9450 -3.4413 4.3102 14 7 3.1460 -3.7284 5.7426 15 6 2.1939 -4.2096 6.6010 16 1 1.1953 -4.4105 6.2420 17 6 2.5121 -4.4393 7.9325 18 7 3.7290 -4.1940 8.3699 19 14 1.2134 -5.0964 9.1033 20 1 1.2472 -6.5810 9.0973 21 1 1.4880 -4.6006 10.4759 22 1 -0.1274 -4.6301 8.6675 23 6 4.5376 -3.4124 6.0964 24 6 5.2390 -2.9284 4.8097 25 1 6.2561 -3.3165 4.7557 26 8 5.2398 -1.5013 4.7363 27 6 5.8073 -2.3629 -0.4184 28 6 5.6253 -3.6766 -1.2002 29 6 4.1284 -3.3328 -1.2768 30 6 2.1981 -1.1969 0.0005 31 1 -0.3634 0.0005 1.0277 32 1 -0.3634 0.8896 -0.5143 33 1 -0.3633 -0.8903 -0.5134 34 1 1.6582 2.1327 -0.0004 35 1 4.1203 2.1327 0.0068 36 1 5.3517 0.0001 -0.0017 37 1 4.7252 -1.8077 2.5064 38 1 2.5379 -2.4388 4.1780 39 1 2.2826 -4.1826 3.8633 40 1 3.9513 -4.3541 9.3005 41 1 5.0351 -4.3045 6.4767 42 1 4.5613 -2.6252 6.8501 43 1 5.7754 -1.0728 5.4179 44 1 6.0005 -1.4993 -1.0546 45 1 6.5072 -2.4422 0.4134 46 1 5.8389 -4.5676 -0.6099 47 1 6.1225 -3.6810 -2.1701 48 1 3.4748 -4.1939 -1.1370 49 1 3.8603 -2.7350 -2.1479 50 1 1.6582 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083688498.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:16:56 Heat of formation + Delta-G solvation = -13.391412 kcal Electronic energy + Delta-G solvation = -31247.271748 eV Core-core repulsion = 27240.581662 eV Total energy + Delta-G solvation = -4006.690086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.07152 -39.09959 -38.27423 -36.94322 -34.82212 -33.94796 -32.82007 -31.70787 -31.23261 -28.57629 -27.39974 -27.16255 -26.01253 -25.61493 -24.35736 -22.43513 -21.48609 -21.18161 -20.45996 -19.99634 -18.90696 -17.31877 -17.02327 -16.77508 -16.50992 -15.58873 -15.45538 -15.23435 -14.93021 -14.66832 -14.29334 -14.03086 -13.87168 -13.81984 -13.43789 -13.23577 -13.13148 -12.72845 -12.62989 -12.51606 -12.44420 -12.22994 -12.18449 -11.84696 -11.64328 -11.27955 -11.19272 -11.04005 -10.94077 -10.82332 -10.54880 -10.49677 -10.42278 -10.39209 -10.11166 -9.80356 -9.68382 -9.30474 -8.82229 -8.68248 -8.63939 -8.58596 -6.85729 -5.73691 -3.06283 1.23361 1.31962 2.78762 3.32253 3.40954 3.45961 3.47981 3.65586 4.30255 4.46546 4.49331 4.52067 4.57387 4.68314 4.77760 4.83567 4.94035 5.05097 5.24210 5.25310 5.31074 5.38334 5.45479 5.51947 5.52229 5.54165 5.56187 5.60711 5.71865 5.74057 5.75029 5.88611 5.92660 5.96504 6.00302 6.05397 6.09180 6.23917 6.24456 6.38332 6.48365 6.53787 6.66010 6.69927 6.92124 6.97670 7.34293 7.45690 7.73670 7.86988 8.08534 8.21103 8.49859 9.19371 9.79485 10.44299 11.38687 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.003232 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.998280 B = 8660.360248 C = 9445.373352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.082 4.082 3 C -0.122 4.122 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.062 4.062 7 C -0.068 4.068 8 C 0.539 3.461 9 O -0.537 6.537 10 N -0.700 5.700 11 C 0.140 3.860 12 H 0.101 0.899 13 C 0.133 3.867 14 N -0.600 5.600 15 C -0.223 4.223 16 H 0.079 0.921 17 C -0.009 4.009 18 N -0.927 5.927 19 Si 0.914 3.086 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.155 3.845 24 C 0.068 3.932 25 H 0.060 0.940 26 O -0.566 6.566 27 C -0.123 4.123 28 C -0.140 4.140 29 C -0.111 4.111 30 C -0.106 4.106 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.407 0.593 38 H 0.025 0.975 39 H 0.044 0.956 40 H 0.252 0.748 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.379 0.621 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.071 0.929 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.525 10.337 -20.074 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.082 4.082 3 C -0.140 4.140 4 C -0.132 4.132 5 C -0.137 4.137 6 C -0.062 4.062 7 C -0.071 4.071 8 C 0.323 3.677 9 O -0.414 6.414 10 N -0.351 5.351 11 C 0.034 3.966 12 H 0.119 0.881 13 C 0.006 3.994 14 N -0.327 5.327 15 C -0.352 4.352 16 H 0.097 0.903 17 C -0.205 4.205 18 N -0.575 5.575 19 Si 0.745 3.255 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.030 3.970 24 C 0.008 3.992 25 H 0.078 0.922 26 O -0.372 6.372 27 C -0.161 4.161 28 C -0.177 4.177 29 C -0.149 4.149 30 C -0.124 4.124 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.243 0.757 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.226 0.774 44 H 0.112 0.888 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.090 0.910 48 H 0.103 0.897 49 H 0.105 0.895 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.812 9.331 -20.360 22.719 hybrid contribution -0.154 0.283 1.400 1.437 sum 3.658 9.614 -18.960 21.571 Atomic orbital electron populations 1.20809 0.91191 1.02580 1.02681 1.19897 0.96133 0.92994 0.99155 1.21029 0.94345 0.97402 1.01267 1.21077 0.94243 0.97830 1.00054 1.21016 0.99928 0.91659 1.01107 1.19367 0.93381 0.93091 1.00377 1.20932 0.97744 0.93651 0.94784 1.19695 0.77314 0.86498 0.84145 1.90696 1.44761 1.19030 1.86954 1.45688 1.67960 1.15893 1.05532 1.22335 0.97623 0.94934 0.81716 0.88067 1.21820 0.93625 0.98162 0.85822 1.44285 1.08292 1.76578 1.03569 1.19098 0.91207 1.35408 0.89437 0.90314 1.24776 0.96978 1.01762 0.96973 1.69913 1.17960 1.54585 1.15056 0.86077 0.80557 0.78608 0.80305 1.21550 1.21676 1.20675 1.21844 0.84802 0.99758 0.90630 1.23501 0.97519 0.80746 0.97421 0.92229 1.86269 1.74718 1.19001 1.57243 1.23044 0.93503 0.99051 1.00502 1.22859 0.96507 0.97713 1.00650 1.22834 0.97708 0.99642 0.94707 1.20898 0.93509 0.97845 1.00119 0.90872 0.91651 0.91518 0.86253 0.86046 0.85778 0.75699 0.95719 0.93801 0.93762 0.92693 0.92935 0.77373 0.88780 0.90736 0.89700 0.91019 0.89658 0.89494 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 10.01 36.00 0.36 -0.73 16 2 C -0.08 -0.93 5.88 -104.63 -0.62 -1.54 16 3 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 4 C -0.11 -1.12 10.05 -39.58 -0.40 -1.52 16 5 C -0.12 -1.23 9.05 -39.58 -0.36 -1.59 16 6 C -0.06 -0.73 4.65 -104.63 -0.49 -1.22 16 7 C -0.07 -0.82 0.94 -156.00 -0.15 -0.97 16 8 C 0.54 8.57 6.40 -10.99 -0.07 8.50 16 9 O -0.54 -10.41 15.62 5.55 0.09 -10.32 16 10 N -0.70 -11.31 5.12 -51.73 -0.27 -11.57 16 11 C 0.14 2.67 3.21 -65.78 -0.21 2.46 16 12 H 0.10 2.04 7.71 -51.93 -0.40 1.64 16 13 C 0.13 3.03 6.93 -2.51 -0.02 3.01 16 14 N -0.60 -15.74 3.40 -170.04 -0.58 -16.32 16 15 C -0.22 -6.38 10.28 -15.06 -0.15 -6.54 16 16 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 18 N -0.93 -27.01 10.31 55.49 0.57 -26.44 16 19 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.16 3.68 5.14 -3.06 -0.02 3.67 16 24 C 0.07 1.24 4.19 -24.90 -0.10 1.14 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 26 O -0.57 -9.25 12.14 -35.23 -0.43 -9.68 16 27 C -0.12 -1.19 6.33 -25.82 -0.16 -1.35 16 28 C -0.14 -1.39 7.81 -25.83 -0.20 -1.60 16 29 C -0.11 -1.23 6.93 -25.92 -0.18 -1.41 16 30 C -0.11 -1.33 9.12 -39.58 -0.36 -1.69 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.12 1.05 6.42 -52.49 -0.34 0.71 16 37 H 0.41 6.15 7.40 -40.82 -0.30 5.84 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.06 1.43 7.38 -51.93 -0.38 1.05 16 42 H 0.05 1.36 7.44 -51.93 -0.39 0.97 16 43 H 0.38 4.79 9.12 45.56 0.42 5.21 16 44 H 0.09 0.73 6.80 -51.93 -0.35 0.38 16 45 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 46 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.08 1.09 7.36 -51.92 -0.38 0.71 16 49 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 50 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 400.71 15.07 6.04 6.04 Total: -1.00 -33.05 400.71 -10.36 -43.40 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -7.16 Total: 10.88 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -3.60 Total: -3.36 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.27 Total: -54.33 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.34 Total: -20.01 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.05 -10.36 -43.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083688498.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.014 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds