Wall clock time and date at job start Sat Apr 11 2020 07:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38258 * 119.99891 * 2 1 4 4 C 1.38217 * 119.99947 * 179.83517 * 3 2 1 5 5 C 1.38251 * 120.00122 * 0.39195 * 4 3 2 6 6 C 1.38215 * 119.99982 * 359.54000 * 5 4 3 7 7 C 1.50694 * 120.00148 * 180.25720 * 6 5 4 8 8 C 1.50698 * 112.85276 * 113.93365 * 7 6 5 9 9 O 1.21283 * 119.99937 * 123.08579 * 8 7 6 10 10 N 1.34780 * 120.00139 * 303.08751 * 8 7 6 11 11 C 1.46499 * 120.00113 * 184.87331 * 10 8 7 12 12 H 1.08996 * 110.88643 * 34.29866 * 11 10 8 13 13 C 1.54909 * 111.00387 * 270.41899 * 11 10 8 14 14 N 1.47466 * 104.81163 * 204.94674 * 13 11 10 15 15 C 1.36935 * 125.63113 * 204.06448 * 14 13 11 16 16 H 1.08000 * 119.99560 * 359.97438 * 15 14 13 17 17 C 1.38816 * 120.00119 * 179.97438 * 15 14 13 18 18 N 1.31616 * 119.99638 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 119.99912 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47162 * 90.00559 * 19 17 15 21 21 H 1.48506 * 109.47195 * 210.00027 * 19 17 15 22 22 H 1.48496 * 109.47597 * 330.00523 * 19 17 15 23 23 C 1.47025 * 108.72076 * 24.07558 * 14 13 11 24 24 C 1.54329 * 107.27166 * 358.96665 * 23 14 13 25 25 H 1.08996 * 110.72163 * 219.44806 * 24 23 14 26 26 O 1.42902 * 110.86744 * 96.24482 * 24 23 14 27 27 C 1.53788 * 113.61380 * 342.73474 * 7 6 5 28 28 C 1.53954 * 87.02168 * 220.04923 * 27 7 6 29 29 C 1.53781 * 87.10965 * 25.36447 * 28 27 7 30 30 C 1.38212 * 120.00380 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47293 * 270.02550 * 1 2 3 32 32 H 1.08994 * 109.47562 * 30.03005 * 1 2 3 33 33 H 1.09002 * 109.46758 * 150.02618 * 1 2 3 34 34 H 1.07999 * 119.99978 * 359.97438 * 3 2 1 35 35 H 1.07999 * 119.99542 * 180.20601 * 4 3 2 36 36 H 1.07996 * 120.00180 * 179.81342 * 5 4 3 37 37 H 0.97002 * 119.99786 * 4.87606 * 10 8 7 38 38 H 1.08999 * 110.36422 * 323.75390 * 13 11 10 39 39 H 1.08998 * 110.36884 * 86.07732 * 13 11 10 40 40 H 0.97003 * 119.99710 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.87780 * 239.55536 * 23 14 13 42 42 H 1.08999 * 110.01373 * 118.46057 * 23 14 13 43 43 H 0.96700 * 113.99614 * 66.39368 * 26 24 23 44 44 H 1.08997 * 113.61275 * 334.57592 * 27 7 6 45 45 H 1.08999 * 113.60887 * 105.47368 * 27 7 6 46 46 H 1.08994 * 113.53865 * 270.81272 * 28 27 7 47 47 H 1.08999 * 113.66205 * 139.93188 * 28 27 7 48 48 H 1.09007 * 113.61397 * 220.09051 * 29 28 27 49 49 H 1.09000 * 113.69434 * 89.19805 * 29 28 27 50 50 H 1.07997 * 119.99869 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0034 5 6 4.2717 0.0001 -0.0013 6 6 3.5807 -1.1969 0.0001 7 6 4.3342 -2.5019 0.0008 8 6 4.1397 -3.2894 1.2709 9 8 3.7069 -4.4213 1.2223 10 7 4.4466 -2.7357 2.4608 11 6 4.3593 -3.5354 3.6851 12 1 4.6328 -4.5727 3.4921 13 6 2.9450 -3.4413 4.3102 14 7 3.1460 -3.7284 5.7426 15 6 2.1939 -4.2096 6.6010 16 1 1.1953 -4.4105 6.2420 17 6 2.5121 -4.4393 7.9325 18 7 3.7290 -4.1940 8.3699 19 14 1.2134 -5.0964 9.1033 20 1 1.2472 -6.5810 9.0973 21 1 1.4880 -4.6006 10.4759 22 1 -0.1274 -4.6301 8.6675 23 6 4.5376 -3.4124 6.0964 24 6 5.2390 -2.9284 4.8097 25 1 6.2561 -3.3165 4.7557 26 8 5.2398 -1.5013 4.7363 27 6 5.8073 -2.3629 -0.4184 28 6 5.6253 -3.6766 -1.2002 29 6 4.1284 -3.3328 -1.2768 30 6 2.1981 -1.1969 0.0005 31 1 -0.3634 0.0005 1.0277 32 1 -0.3634 0.8896 -0.5143 33 1 -0.3633 -0.8903 -0.5134 34 1 1.6582 2.1327 -0.0004 35 1 4.1203 2.1327 0.0068 36 1 5.3517 0.0001 -0.0017 37 1 4.7252 -1.8077 2.5064 38 1 2.5379 -2.4388 4.1780 39 1 2.2826 -4.1826 3.8633 40 1 3.9513 -4.3541 9.3005 41 1 5.0351 -4.3045 6.4767 42 1 4.5613 -2.6252 6.8501 43 1 5.7754 -1.0728 5.4179 44 1 6.0005 -1.4993 -1.0546 45 1 6.5072 -2.4422 0.4134 46 1 5.8389 -4.5676 -0.6099 47 1 6.1225 -3.6810 -2.1701 48 1 3.4748 -4.1939 -1.1370 49 1 3.8603 -2.7350 -2.1479 50 1 1.6582 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083688498.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:16:55 Heat of formation + Delta-G solvation = -35.185073 kcal Electronic energy + Delta-G solvation = -31248.216792 eV Core-core repulsion = 27240.581662 eV Total energy + Delta-G solvation = -4007.635130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.11740 -40.33146 -39.53740 -38.11254 -36.49140 -35.48185 -33.73184 -33.49625 -32.13176 -30.37587 -29.01368 -28.03256 -27.21817 -26.51559 -26.11352 -23.48206 -22.59597 -22.20122 -21.99854 -21.58702 -20.13870 -19.09638 -18.35042 -17.95166 -17.49834 -16.98335 -16.76708 -16.50003 -16.14883 -15.92019 -15.78399 -15.42661 -14.99937 -14.83435 -14.70125 -14.61713 -14.42972 -14.14507 -14.02438 -13.93511 -13.38695 -13.28530 -13.21707 -13.01210 -12.85638 -12.76966 -12.64983 -12.43168 -12.32638 -12.14898 -11.99970 -11.95660 -11.89909 -11.88675 -11.34185 -11.24614 -10.96155 -10.85475 -10.79112 -10.11635 -9.66989 -9.46198 -8.98138 -7.91306 -5.27390 0.40776 0.50058 1.43206 1.45325 1.52836 1.54326 2.03098 2.46563 2.81961 3.14760 3.27588 3.44457 3.53125 3.61601 3.67407 3.74972 3.85232 3.89177 3.93039 4.04209 4.10289 4.21191 4.29255 4.40312 4.46897 4.49749 4.62956 4.64839 4.75455 4.76996 4.77407 4.80491 4.85118 4.96197 4.98844 5.02739 5.08383 5.10578 5.18414 5.29698 5.32327 5.41757 5.44130 5.46877 5.60329 5.61859 5.66202 5.72402 6.11502 6.13774 6.56098 6.85695 7.04059 7.21574 7.67356 8.31530 9.18599 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.003232 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.998280 B = 8660.360248 C = 9445.373352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.096 4.096 3 C -0.128 4.128 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.071 4.071 7 C -0.068 4.068 8 C 0.537 3.463 9 O -0.579 6.579 10 N -0.690 5.690 11 C 0.152 3.848 12 H 0.090 0.910 13 C 0.136 3.864 14 N -0.620 5.620 15 C -0.251 4.251 16 H 0.074 0.926 17 C -0.057 4.057 18 N -0.946 5.946 19 Si 0.980 3.020 20 H -0.285 1.285 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.161 3.839 24 C 0.094 3.906 25 H 0.094 0.906 26 O -0.564 6.564 27 C -0.109 4.109 28 C -0.137 4.137 29 C -0.112 4.112 30 C -0.131 4.131 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.416 0.584 38 H 0.017 0.983 39 H 0.023 0.977 40 H 0.250 0.750 41 H 0.026 0.974 42 H 0.027 0.973 43 H 0.398 0.602 44 H 0.124 0.876 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.097 0.903 48 H 0.057 0.943 49 H 0.106 0.894 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.000 12.686 -21.423 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.131 4.131 5 C -0.136 4.136 6 C -0.072 4.072 7 C -0.071 4.071 8 C 0.324 3.676 9 O -0.458 6.458 10 N -0.341 5.341 11 C 0.045 3.955 12 H 0.108 0.892 13 C 0.009 3.991 14 N -0.347 5.347 15 C -0.379 4.379 16 H 0.091 0.909 17 C -0.250 4.250 18 N -0.595 5.595 19 Si 0.807 3.193 20 H -0.211 1.211 21 H -0.213 1.213 22 H -0.198 1.198 23 C 0.035 3.965 24 C 0.034 3.966 25 H 0.112 0.888 26 O -0.373 6.373 27 C -0.147 4.147 28 C -0.174 4.174 29 C -0.150 4.150 30 C -0.149 4.149 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.158 0.842 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.254 0.746 38 H 0.035 0.965 39 H 0.042 0.958 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.045 0.955 43 H 0.249 0.751 44 H 0.142 0.858 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.116 0.884 48 H 0.076 0.924 49 H 0.124 0.876 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.306 11.720 -21.731 25.254 hybrid contribution -0.684 -0.414 1.809 1.978 sum 4.622 11.306 -19.922 23.368 Atomic orbital electron populations 1.20832 0.90449 1.03523 1.02440 1.20137 0.97002 0.93132 0.99346 1.21357 0.95046 0.97652 1.00494 1.21470 0.94168 0.98869 0.98598 1.21296 1.01171 0.90982 1.00124 1.19378 0.92965 0.93494 1.01319 1.20879 1.00166 0.93478 0.92612 1.20453 0.75810 0.86219 0.85147 1.90678 1.46384 1.21152 1.87606 1.45544 1.67950 1.15962 1.04650 1.21935 0.95159 0.95169 0.83223 0.89194 1.21813 0.95842 0.96782 0.84676 1.44556 1.08998 1.76487 1.04673 1.19398 0.91849 1.36211 0.90488 0.90855 1.25588 0.99124 1.02027 0.98275 1.70106 1.19365 1.54905 1.15097 0.85071 0.78376 0.77870 0.77945 1.21131 1.21328 1.19844 1.21718 0.83989 0.97804 0.92968 1.23122 0.98068 0.81882 0.93561 0.88816 1.86231 1.75490 1.17551 1.57994 1.23101 0.91098 0.99732 1.00729 1.22825 0.95598 0.97242 1.01781 1.22879 0.98230 0.98863 0.95004 1.20925 0.94329 0.97629 1.02026 0.91635 0.89634 0.91715 0.84208 0.83198 0.83309 0.74628 0.96490 0.95841 0.94030 0.95568 0.95450 0.75074 0.85808 0.90441 0.91841 0.88411 0.92411 0.87560 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 10.01 71.23 0.71 -1.43 16 2 C -0.10 -2.11 5.88 -19.87 -0.12 -2.23 16 3 C -0.13 -2.31 9.70 22.27 0.22 -2.10 16 4 C -0.11 -1.82 10.05 22.27 0.22 -1.60 16 5 C -0.12 -2.04 9.05 22.27 0.20 -1.83 16 6 C -0.07 -1.58 4.65 -19.87 -0.09 -1.67 16 7 C -0.07 -1.57 0.94 -53.15 -0.05 -1.62 16 8 C 0.54 17.23 6.40 87.66 0.56 17.79 16 9 O -0.58 -23.45 15.62 -3.04 -0.05 -23.50 16 10 N -0.69 -21.94 5.12 -435.97 -2.23 -24.17 16 11 C 0.15 5.86 3.21 46.38 0.15 6.01 16 12 H 0.09 3.72 7.71 -2.39 -0.02 3.70 16 13 C 0.14 6.42 6.93 86.85 0.60 7.02 16 14 N -0.62 -33.66 3.40 -691.87 -2.35 -36.01 16 15 C -0.25 -14.80 10.28 84.03 0.86 -13.93 16 16 H 0.07 4.26 7.83 -2.91 -0.02 4.24 16 17 C -0.06 -3.28 5.49 84.86 0.47 -2.81 16 18 N -0.95 -56.27 10.31 21.65 0.22 -56.05 16 19 Si 0.98 46.67 29.55 68.60 2.03 48.69 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 23 C 0.16 7.79 5.14 86.73 0.45 8.24 16 24 C 0.09 3.34 4.19 31.78 0.13 3.48 16 25 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 26 O -0.56 -17.21 12.14 -148.98 -1.81 -19.02 16 27 C -0.11 -1.77 6.33 31.18 0.20 -1.57 16 28 C -0.14 -2.49 7.81 31.18 0.24 -2.25 16 29 C -0.11 -2.42 6.93 31.12 0.22 -2.20 16 30 C -0.13 -3.31 9.12 22.27 0.20 -3.11 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 33 H 0.06 1.18 8.09 -2.39 -0.02 1.16 16 34 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 35 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 36 H 0.15 1.78 6.42 -2.91 -0.02 1.76 16 37 H 0.42 11.80 7.40 -92.71 -0.69 11.12 16 38 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 41 H 0.03 1.41 7.38 -2.39 -0.02 1.39 16 42 H 0.03 1.45 7.44 -2.39 -0.02 1.43 16 43 H 0.40 9.01 9.12 -74.06 -0.68 8.33 16 44 H 0.12 1.32 6.80 -2.39 -0.02 1.30 16 45 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 46 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.06 1.56 7.36 -2.38 -0.02 1.54 16 49 H 0.11 1.86 8.09 -2.39 -0.02 1.84 16 50 H 0.10 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -74.99 400.71 0.58 -74.41 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: -0.40 Total: 31.47 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 5.17 Total: 4.17 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -4.36 Total: -116.23 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -1.86 Total: -42.52 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -74.99 0.58 -74.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083688498.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.223 kcal (2) G-P(sol) polarization free energy of solvation -74.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds