Wall clock time and date at job start Sat Apr 11 2020 07:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37975 * 119.87630 * 2 1 4 4 C 1.38244 * 120.34898 * 179.97438 * 3 2 1 5 5 C 1.38397 * 119.76804 * 359.83761 * 4 3 2 6 6 C 1.37701 * 119.97500 * 359.97438 * 5 4 3 7 7 C 1.38923 * 120.78684 * 0.34186 * 6 5 4 8 8 O 1.36134 * 111.22612 * 178.94817 * 7 6 5 9 9 C 1.43780 * 109.24076 * 19.01733 * 8 7 6 10 10 H 1.09002 * 110.90378 * 213.85305 * 9 8 7 11 11 C 1.50705 * 110.74652 * 90.58320 * 9 8 7 12 12 O 1.21280 * 119.99748 * 1.62358 * 11 9 8 13 13 N 1.34769 * 119.99510 * 181.62706 * 11 9 8 14 14 C 1.46505 * 119.99798 * 179.97438 * 13 11 9 15 15 H 1.09002 * 109.47068 * 34.99973 * 14 13 11 16 16 C 1.52997 * 109.47212 * 274.99913 * 14 13 11 17 17 C 1.52992 * 109.47482 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47106 * 60.00162 * 17 16 14 19 19 C 1.53002 * 109.47128 * 300.00123 * 18 17 16 20 20 C 1.52997 * 109.46978 * 59.99726 * 19 18 17 21 21 H 1.09002 * 109.47497 * 60.00450 * 20 19 18 22 22 N 1.46507 * 109.47235 * 180.02562 * 20 19 18 23 23 C 1.36936 * 119.99663 * 275.00138 * 22 20 19 24 24 H 1.07998 * 120.00133 * 359.97438 * 23 22 20 25 25 C 1.38811 * 119.99967 * 180.02562 * 23 22 20 26 26 N 1.31621 * 119.99860 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00257 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.46920 * 359.97438 * 27 25 23 29 29 H 1.48509 * 109.47210 * 119.99507 * 27 25 23 30 30 H 1.48492 * 109.47349 * 239.99702 * 27 25 23 31 31 C 1.51643 * 132.17467 * 180.36280 * 6 5 4 32 32 H 1.08998 * 109.46662 * 90.00339 * 1 2 3 33 33 H 1.09001 * 109.47255 * 209.99981 * 1 2 3 34 34 H 1.08995 * 109.47284 * 330.00136 * 1 2 3 35 35 H 1.07999 * 119.82903 * 0.02562 * 3 2 1 36 36 H 1.07996 * 120.11905 * 179.80753 * 4 3 2 37 37 H 1.08000 * 120.01327 * 180.02562 * 5 4 3 38 38 H 0.97005 * 120.00963 * 359.97438 * 13 11 9 39 39 H 1.09002 * 109.47153 * 300.00008 * 16 14 13 40 40 H 1.08998 * 109.47533 * 59.99637 * 16 14 13 41 41 H 1.09002 * 109.47103 * 300.00247 * 17 16 14 42 42 H 1.08996 * 109.47747 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.47407 * 180.02562 * 18 17 16 44 44 H 1.09002 * 109.47596 * 60.00070 * 18 17 16 45 45 H 1.09002 * 109.47097 * 299.99925 * 19 18 17 46 46 H 1.08998 * 109.47844 * 180.02562 * 19 18 17 47 47 H 0.96997 * 120.00022 * 95.00053 * 22 20 19 48 48 H 0.96998 * 119.99581 * 180.02562 * 26 25 23 49 49 H 1.09003 * 110.93744 * 46.44229 * 31 6 5 50 50 H 1.08997 * 110.97567 * 282.76361 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1964 0.0000 4 6 3.5767 1.2078 0.0005 5 6 4.2737 0.0122 0.0045 6 6 3.5897 -1.1829 0.0084 7 6 2.2007 -1.2073 0.0013 8 8 1.7303 -2.4846 -0.0165 9 6 2.7686 -3.3781 0.4202 10 1 2.7029 -4.3342 -0.0992 11 6 2.7079 -3.5784 1.9126 12 8 1.8383 -3.0373 2.5621 13 7 3.6200 -4.3588 2.5253 14 6 3.5613 -4.5531 3.9762 15 1 2.5202 -4.5715 4.2986 16 6 4.2912 -3.4041 4.6746 17 6 4.2295 -3.6066 6.1898 18 6 4.8993 -4.9329 6.5548 19 6 4.1695 -6.0820 5.8565 20 6 4.2312 -5.8794 4.3412 21 1 5.2724 -5.8613 4.0191 22 7 3.5318 -6.9794 3.6725 23 6 4.1907 -8.1510 3.4107 24 1 5.2259 -8.2639 3.6967 25 6 3.5282 -9.1931 2.7766 26 7 2.2666 -9.0553 2.4275 27 14 4.4267 -10.7915 2.4200 28 1 5.8254 -10.6928 2.9092 29 1 3.7380 -11.9113 3.1109 30 1 4.4312 -11.0409 0.9562 31 6 4.0593 -2.6248 0.0202 32 1 -0.3632 -0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3633 0.8899 0.5138 35 1 1.6495 2.1289 0.0004 36 1 4.1109 2.1464 -0.0026 37 1 5.3537 0.0164 0.0053 38 1 4.3154 -4.7919 2.0058 39 1 5.3323 -3.3857 4.3523 40 1 3.8139 -2.4592 4.4150 41 1 3.1883 -3.6247 6.5118 42 1 4.7498 -2.7883 6.6874 43 1 4.8550 -5.0774 7.6342 44 1 5.9406 -4.9149 6.2328 45 1 3.1283 -6.1002 6.1785 46 1 4.6463 -7.0270 6.1167 47 1 2.6021 -6.8779 3.4152 48 1 1.8037 -9.7836 1.9847 49 1 4.8429 -2.7731 0.7633 50 1 4.3994 -2.9325 -0.9685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085445036.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:18:42 Heat of formation + Delta-G solvation = -47.126866 kcal Electronic energy + Delta-G solvation = -30992.535208 eV Core-core repulsion = 26984.382243 eV Total energy + Delta-G solvation = -4008.152965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.53563 -39.50361 -38.03607 -37.12574 -34.12069 -33.98003 -33.47323 -31.29554 -31.13079 -30.13786 -28.91479 -27.61485 -26.85240 -24.51568 -23.74187 -22.41452 -21.92649 -21.10772 -20.97991 -20.16892 -19.60849 -17.83347 -17.17851 -16.99546 -16.73340 -15.79401 -15.59516 -15.30210 -14.82036 -14.50625 -14.19174 -13.96879 -13.80406 -13.68797 -13.62754 -13.41378 -13.17279 -13.03452 -12.97967 -12.70871 -12.43200 -12.28030 -12.21767 -12.11546 -11.68494 -11.56265 -11.52579 -11.11757 -10.96716 -10.90640 -10.86420 -10.78673 -10.59509 -10.35214 -10.17248 -9.80156 -9.68757 -9.53662 -8.97180 -8.78811 -8.64450 -8.11911 -7.03287 -5.82335 -3.12454 1.17351 1.27856 2.75400 3.03266 3.37841 3.43855 3.46370 3.47849 3.62588 4.27987 4.38713 4.51445 4.70168 4.77653 4.84576 5.02913 5.10021 5.12114 5.16611 5.19163 5.27319 5.37761 5.46082 5.48619 5.50775 5.52145 5.59668 5.63479 5.68517 5.78568 5.80055 5.85955 5.92219 5.94959 6.08969 6.15097 6.24647 6.29057 6.30191 6.41030 6.42629 6.44380 6.46840 6.50858 6.55255 6.81392 6.85496 7.03631 7.11098 7.63814 7.80632 8.34611 8.47161 9.46572 10.02594 10.37898 11.39513 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.003192 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.154753 B = 8770.826568 C =10069.294817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.090 4.090 4 C -0.149 4.149 5 C -0.075 4.075 6 C -0.171 4.171 7 C 0.116 3.884 8 O -0.271 6.271 9 C 0.063 3.937 10 H 0.146 0.854 11 C 0.501 3.499 12 O -0.529 6.529 13 N -0.701 5.701 14 C 0.142 3.858 15 H 0.084 0.916 16 C -0.123 4.123 17 C -0.114 4.114 18 C -0.119 4.119 19 C -0.133 4.133 20 C 0.174 3.826 21 H 0.051 0.949 22 N -0.722 5.722 23 C -0.241 4.241 24 H 0.071 0.929 25 C -0.010 4.010 26 N -0.928 5.928 27 Si 0.904 3.096 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 C -0.098 4.098 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.403 0.597 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.097 0.903 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.958 19.404 -3.300 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.100 4.100 3 C -0.108 4.108 4 C -0.167 4.167 5 C -0.093 4.093 6 C -0.172 4.172 7 C 0.070 3.930 8 O -0.182 6.182 9 C 0.003 3.997 10 H 0.163 0.837 11 C 0.285 3.715 12 O -0.405 6.405 13 N -0.352 5.352 14 C 0.037 3.963 15 H 0.102 0.898 16 C -0.162 4.162 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.174 4.174 20 C 0.063 3.937 21 H 0.069 0.931 22 N -0.363 5.363 23 C -0.372 4.372 24 H 0.089 0.911 25 C -0.207 4.207 26 N -0.576 5.576 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 C -0.135 4.135 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.238 0.762 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.115 0.885 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.201 19.535 -2.942 20.197 hybrid contribution 0.614 -1.343 -0.451 1.544 sum 4.815 18.192 -3.393 19.122 Atomic orbital electron populations 1.20691 0.90626 1.03196 1.02142 1.19143 0.96506 0.89528 1.04858 1.20762 0.94212 0.96468 0.99318 1.20967 0.94097 0.97630 1.03989 1.20240 0.99653 0.90506 0.98945 1.20727 0.93722 0.95289 1.07473 1.19402 0.91713 0.85647 0.96233 1.86946 1.38132 1.13167 1.80000 1.23385 0.86593 0.95989 0.93770 0.83703 1.20632 0.81974 0.79503 0.89402 1.90706 1.35283 1.48347 1.66177 1.45820 1.31579 1.48850 1.08988 1.21323 1.01285 0.95147 0.78563 0.89784 1.21859 1.00423 0.98494 0.95446 1.21469 1.01081 0.97442 0.95184 1.21582 0.99520 0.94991 0.99642 1.22221 1.00294 0.97538 0.97366 1.20459 0.95561 0.86191 0.91460 0.93131 1.42436 1.12684 1.11710 1.69466 1.19238 0.95137 0.91129 1.31714 0.91144 1.24742 0.96047 0.98390 1.01516 1.69683 1.09385 1.32492 1.46057 0.86168 0.78652 0.84051 0.77570 1.20594 1.21916 1.21920 1.21772 0.97107 0.90576 1.04091 0.91444 0.90906 0.91609 0.85352 0.85613 0.85882 0.76197 0.92036 0.92050 0.91969 0.92376 0.92658 0.92377 0.92450 0.91556 0.78125 0.93517 0.88479 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.98 36.01 0.36 -0.90 16 2 C -0.10 -1.30 5.90 -104.34 -0.62 -1.91 16 3 C -0.09 -0.96 9.66 -39.68 -0.38 -1.34 16 4 C -0.15 -1.48 10.07 -39.52 -0.40 -1.88 16 5 C -0.08 -0.81 10.03 -39.72 -0.40 -1.21 16 6 C -0.17 -2.18 6.26 -104.10 -0.65 -2.83 16 7 C 0.12 1.70 6.60 -38.96 -0.26 1.44 16 8 O -0.27 -4.35 10.29 -39.23 -0.40 -4.75 16 9 C 0.06 0.88 4.11 -26.98 -0.11 0.77 16 10 H 0.15 1.80 8.14 -51.93 -0.42 1.38 16 11 C 0.50 8.47 7.03 -10.99 -0.08 8.40 16 12 O -0.53 -10.96 16.19 -13.50 -0.22 -11.18 16 13 N -0.70 -11.03 4.75 -53.80 -0.26 -11.29 16 14 C 0.14 2.37 1.97 -67.93 -0.13 2.23 16 15 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 16 C -0.12 -1.74 5.49 -26.74 -0.15 -1.88 16 17 C -0.11 -1.48 5.92 -26.73 -0.16 -1.64 16 18 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 19 C -0.13 -2.27 5.50 -26.73 -0.15 -2.41 16 20 C 0.17 3.18 2.29 -67.93 -0.16 3.02 16 21 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 22 N -0.72 -16.83 4.95 -53.42 -0.26 -17.09 16 23 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 24 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 25 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 26 N -0.93 -27.16 13.06 55.49 0.72 -26.44 16 27 Si 0.90 21.57 29.55 -169.99 -5.02 16.55 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 31 C -0.10 -1.09 6.64 -26.52 -0.18 -1.26 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.97 8.01 -51.93 -0.42 0.56 16 34 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.40 5.77 8.60 -40.82 -0.35 5.42 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.38 9.98 7.80 -40.82 -0.32 9.66 16 48 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.10 0.96 7.78 -51.93 -0.40 0.56 16 50 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 404.74 15.07 6.10 6.10 Total: -1.00 -32.30 404.74 -11.38 -43.68 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -8.19 Total: 14.36 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -3.86 Total: -9.95 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.20 Total: -54.81 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.62 Total: -15.93 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.30 -11.38 -43.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085445036.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.443 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds