Wall clock time and date at job start Sat Apr 11 2020 07:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.91336 * 2 1 4 4 C 1.54906 * 111.00057 * 236.10426 * 2 1 3 5 5 N 1.47434 * 104.82766 * 204.91142 * 4 2 1 6 6 C 1.34774 * 125.64668 * 204.15993 * 5 4 2 7 7 O 1.21282 * 120.00081 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00111 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47282 * 180.02562 * 8 6 5 10 10 H 1.08995 * 110.13307 * 54.29727 * 9 8 6 11 11 O 1.43948 * 110.15428 * 292.59571 * 9 8 6 12 12 C 1.44104 * 104.86363 * 269.30247 * 11 9 8 13 13 C 1.51082 * 105.97505 * 331.55301 * 12 11 9 14 14 C 1.37967 * 132.69179 * 197.72525 * 13 12 11 15 15 C 1.38296 * 119.91988 * 180.02562 * 14 13 12 16 16 C 1.38256 * 120.04286 * 359.95193 * 15 14 13 17 17 C 1.38298 * 120.04146 * 0.02562 * 16 15 14 18 18 C 1.37964 * 119.91642 * 0.02562 * 17 16 15 19 19 C 1.47022 * 108.70403 * 24.12754 * 5 4 2 20 20 C 1.54325 * 107.27050 * 358.94197 * 19 5 4 21 21 H 1.09003 * 110.72146 * 219.26638 * 20 19 5 22 22 N 1.46499 * 110.72343 * 96.16744 * 20 19 5 23 23 C 1.36932 * 119.99549 * 86.45446 * 22 20 19 24 24 H 1.08003 * 120.00354 * 0.02562 * 23 22 20 25 25 C 1.38817 * 120.00011 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00154 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 119.99635 * 0.02562 * 25 23 22 28 28 H 1.48506 * 109.47297 * 269.99668 * 27 25 23 29 29 H 1.48503 * 109.47261 * 149.99848 * 27 25 23 30 30 H 1.48500 * 109.47454 * 29.99841 * 27 25 23 31 31 H 1.09005 * 109.47039 * 296.09567 * 1 2 3 32 32 H 1.09004 * 109.47398 * 56.09498 * 1 2 3 33 33 H 1.09003 * 109.46908 * 176.10189 * 1 2 3 34 34 H 1.08997 * 109.46987 * 183.90640 * 3 2 1 35 35 H 1.09000 * 109.47423 * 303.90292 * 3 2 1 36 36 H 1.09003 * 109.47320 * 63.90494 * 3 2 1 37 37 H 1.08997 * 110.36960 * 86.07670 * 4 2 1 38 38 H 1.08999 * 110.36882 * 323.74513 * 4 2 1 39 39 H 1.09000 * 109.47029 * 300.00496 * 8 6 5 40 40 H 1.09005 * 109.46780 * 59.99848 * 8 6 5 41 41 H 1.09004 * 110.14153 * 212.42933 * 12 11 9 42 42 H 1.09004 * 110.21803 * 90.71121 * 12 11 9 43 43 H 1.08007 * 120.04102 * 0.02562 * 14 13 12 44 44 H 1.08006 * 119.97771 * 179.97438 * 15 14 13 45 45 H 1.07995 * 119.98306 * 180.02562 * 16 15 14 46 46 H 1.08000 * 120.04299 * 180.02562 * 17 16 15 47 47 H 1.08993 * 109.88220 * 239.52064 * 19 5 4 48 48 H 1.09003 * 109.87923 * 118.35141 * 19 5 4 49 49 H 0.96993 * 120.00302 * 266.45410 * 22 20 19 50 50 H 0.96998 * 119.99442 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4292 0.0000 4 6 2.0852 -0.8065 -1.2004 5 7 3.4271 -1.2429 -0.7735 6 6 4.4480 -1.5601 -1.5942 7 8 4.3013 -1.4979 -2.7965 8 6 5.7719 -1.9920 -1.0180 9 6 6.7501 -2.2908 -2.1557 10 1 6.8223 -1.4325 -2.8237 11 8 6.3200 -3.4537 -2.8871 12 6 6.9670 -4.5624 -2.2322 13 6 8.2432 -4.0096 -1.6421 14 6 9.4008 -4.6085 -1.1897 15 6 10.4292 -3.8313 -0.6887 16 6 10.2978 -2.4557 -0.6422 17 6 9.1376 -1.8553 -1.0961 18 6 8.1113 -2.6307 -1.5950 19 6 3.4675 -1.2740 0.6959 20 6 2.0862 -0.8079 1.2022 21 1 2.1920 -0.1725 2.0815 22 7 1.2269 -1.9574 1.4961 23 6 1.2817 -2.5563 2.7263 24 1 1.9581 -2.1810 3.4800 25 6 0.4671 -3.6452 3.0051 26 7 0.5194 -4.2206 4.1877 27 14 -0.7033 -4.2939 1.7017 28 1 -2.0110 -3.6005 1.8215 29 1 -0.8976 -5.7537 1.8933 30 1 -0.1317 -4.0433 0.3542 31 1 -0.3633 0.4521 0.9229 32 1 -0.3634 0.5733 -0.8529 33 1 -0.3633 -1.0253 -0.0699 34 1 3.1635 1.4026 -0.0700 35 1 1.6704 1.9733 -0.8529 36 1 1.7836 1.9300 0.9229 37 1 2.1558 -0.1718 -2.0837 38 1 1.4518 -1.6703 -1.4025 39 1 6.1740 -1.1941 -0.3937 40 1 5.6303 -2.8889 -0.4149 41 1 7.1959 -5.3444 -2.9563 42 1 6.3286 -4.9579 -1.4422 43 1 9.5039 -5.6830 -1.2267 44 1 11.3357 -4.2991 -0.3338 45 1 11.1016 -1.8497 -0.2511 46 1 9.0351 -0.7808 -1.0602 47 1 4.2427 -0.5997 1.0598 48 1 3.6651 -2.2893 1.0398 49 1 0.6192 -2.2943 0.8194 50 1 -0.0501 -4.9812 4.3825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996567950.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:16:53 Heat of formation + Delta-G solvation = -26.457515 kcal Electronic energy + Delta-G solvation = -30837.039372 eV Core-core repulsion = 26829.782698 eV Total energy + Delta-G solvation = -4007.256674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.11847 -39.95952 -38.13434 -37.31155 -34.05540 -33.33186 -32.47324 -31.50649 -31.12602 -30.29955 -28.28092 -27.22532 -26.90599 -25.81740 -24.10149 -23.53227 -21.77783 -21.53236 -21.11275 -19.16876 -18.79507 -17.62502 -17.15599 -16.86348 -16.35221 -16.13165 -15.78849 -15.57489 -14.87816 -14.67679 -14.47398 -14.30678 -13.99592 -13.80330 -13.71767 -13.24951 -13.11207 -13.02127 -12.78719 -12.60772 -12.48955 -12.21874 -12.14143 -12.03019 -11.92999 -11.75264 -11.62537 -11.42701 -11.30455 -11.06038 -11.01891 -10.67815 -10.55924 -10.30943 -10.13208 -9.95054 -9.67008 -9.61269 -9.16245 -9.04944 -8.80598 -8.28720 -7.39885 -5.86878 -3.23650 0.95838 1.05926 2.89251 3.20429 3.31507 3.34745 3.40380 3.43657 3.82132 3.97482 4.37777 4.50746 4.59271 4.65400 4.74394 4.79295 4.94323 4.98716 5.04626 5.07961 5.17085 5.21098 5.26520 5.29809 5.32433 5.46564 5.50638 5.54950 5.61003 5.63597 5.72743 5.80054 5.81859 5.84022 5.94585 6.03597 6.08461 6.08574 6.13208 6.15748 6.17988 6.22110 6.25000 6.44016 6.55742 6.59580 6.65408 6.66999 6.69690 7.83849 7.88038 8.32068 8.43379 9.09347 9.81991 10.00713 11.30873 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011272 B = 0.003149 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.371564 B = 8890.980610 C = 9972.107014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 C -0.128 4.128 4 C 0.120 3.880 5 N -0.609 5.609 6 C 0.530 3.470 7 O -0.542 6.542 8 C -0.150 4.150 9 C 0.140 3.860 10 H 0.110 0.890 11 O -0.334 6.334 12 C 0.080 3.920 13 C -0.124 4.124 14 C -0.096 4.096 15 C -0.115 4.115 16 C -0.117 4.117 17 C -0.090 4.090 18 C -0.124 4.124 19 C 0.072 3.928 20 C 0.185 3.815 21 H 0.079 0.921 22 N -0.737 5.737 23 C -0.250 4.250 24 H 0.092 0.908 25 C 0.011 3.989 26 N -0.929 5.929 27 Si 0.878 3.122 28 H -0.282 1.282 29 H -0.290 1.290 30 H -0.277 1.277 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.058 0.942 48 H 0.078 0.922 49 H 0.364 0.636 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.488 6.534 -10.164 20.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.094 4.094 3 C -0.186 4.186 4 C -0.002 4.002 5 N -0.342 5.342 6 C 0.319 3.681 7 O -0.420 6.420 8 C -0.191 4.191 9 C 0.081 3.919 10 H 0.128 0.872 11 O -0.252 6.252 12 C 0.004 3.996 13 C -0.125 4.125 14 C -0.114 4.114 15 C -0.133 4.133 16 C -0.135 4.135 17 C -0.108 4.108 18 C -0.124 4.124 19 C -0.054 4.054 20 C 0.074 3.926 21 H 0.096 0.904 22 N -0.380 5.380 23 C -0.379 4.379 24 H 0.110 0.890 25 C -0.185 4.185 26 N -0.576 5.576 27 Si 0.708 3.292 28 H -0.208 1.208 29 H -0.216 1.216 30 H -0.203 1.203 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.144 0.856 47 H 0.076 0.924 48 H 0.097 0.903 49 H 0.198 0.802 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.347 6.439 -10.775 20.611 hybrid contribution -0.653 -0.812 -0.416 1.122 sum 15.693 5.628 -11.191 20.080 Atomic orbital electron populations 1.21599 0.93110 1.02123 1.01663 1.22046 0.96371 0.95241 0.95695 1.21662 1.00717 0.94461 1.01746 1.22239 0.83143 0.97834 0.97031 1.48437 1.11882 1.66185 1.07740 1.19971 0.84753 0.77220 0.86193 1.90696 1.83252 1.53603 1.14431 1.22070 0.93595 1.04129 0.99263 1.21015 0.87401 0.90962 0.92477 0.87183 1.89332 1.68824 1.14509 1.52565 1.21880 0.89432 0.90977 0.97354 1.21129 0.96216 0.94978 1.00133 1.20423 0.92026 1.00106 0.98834 1.21148 0.98770 0.93954 0.99393 1.21137 0.97555 0.94979 0.99869 1.20438 0.92305 0.99829 0.98277 1.21010 0.96082 0.94726 1.00611 1.23209 1.01242 1.02352 0.78625 1.21180 0.87901 0.88917 0.94642 0.90359 1.42815 1.46361 1.34397 1.14399 1.19037 1.19812 1.09715 0.89362 0.88987 1.24638 0.99447 0.98142 0.96286 1.69690 1.42454 1.24857 1.20624 0.86661 0.81954 0.78650 0.81931 1.20838 1.21626 1.20328 0.91593 0.93142 0.92312 0.92709 0.92720 0.92118 0.90993 0.91841 0.87952 0.88356 0.88454 0.90355 0.85677 0.85488 0.85445 0.85609 0.92413 0.90329 0.80179 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.22 37.16 0.31 -1.53 16 2 C -0.09 -1.34 0.83 -152.36 -0.13 -1.47 16 3 C -0.13 -1.54 8.57 37.16 0.32 -1.22 16 4 C 0.12 1.91 5.82 -2.53 -0.01 1.90 16 5 N -0.61 -9.84 3.31 -170.52 -0.56 -10.41 16 6 C 0.53 8.74 7.76 -10.99 -0.09 8.65 16 7 O -0.54 -10.58 15.80 -5.10 -0.08 -10.66 16 8 C -0.15 -1.98 4.56 -27.89 -0.13 -2.10 16 9 C 0.14 1.83 2.93 -27.69 -0.08 1.75 16 10 H 0.11 1.46 7.95 -51.93 -0.41 1.04 16 11 O -0.33 -5.07 10.85 -45.89 -0.50 -5.57 16 12 C 0.08 0.95 7.39 36.19 0.27 1.22 16 13 C -0.12 -1.39 6.32 -104.40 -0.66 -2.05 16 14 C -0.10 -0.89 10.04 -39.66 -0.40 -1.29 16 15 C -0.11 -0.95 10.05 -39.55 -0.40 -1.34 16 16 C -0.12 -0.97 10.05 -39.55 -0.40 -1.37 16 17 C -0.09 -0.85 10.04 -39.66 -0.40 -1.25 16 18 C -0.12 -1.41 5.62 -104.40 -0.59 -1.99 16 19 C 0.07 1.14 5.91 -3.06 -0.02 1.13 16 20 C 0.19 3.20 2.86 -66.10 -0.19 3.01 16 21 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 22 N -0.74 -16.03 4.42 -51.65 -0.23 -16.26 16 23 C -0.25 -6.55 10.46 -15.06 -0.16 -6.71 16 24 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 25 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 26 N -0.93 -28.09 13.97 55.49 0.78 -27.31 16 27 Si 0.88 21.51 27.73 -169.99 -4.71 16.80 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.95 6.38 -51.93 -0.33 0.62 16 34 H 0.05 0.65 7.91 -51.93 -0.41 0.24 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.11 7.95 -51.93 -0.41 0.70 16 38 H 0.06 1.11 7.98 -51.93 -0.41 0.69 16 39 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.10 1.32 7.97 -51.93 -0.41 0.91 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 44 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 45 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 49 H 0.36 8.02 3.96 -40.82 -0.16 7.86 16 50 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 399.64 15.07 6.02 6.02 Total: -1.00 -32.86 399.64 -10.19 -43.05 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -8.06 Total: 8.80 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.84 Total: -4.45 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.02 Total: -53.98 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.58 Total: -16.23 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.86 -10.19 -43.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996567950.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.590 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds