Wall clock time and date at job start Sat Apr 11 2020 07:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.43732 * 2 1 4 4 O 1.21290 * 119.99684 * 358.33775 * 3 2 1 5 5 N 1.34770 * 120.00454 * 178.34387 * 3 2 1 6 6 C 1.46919 * 120.63646 * 175.61316 * 5 3 2 7 7 C 1.53190 * 108.78169 * 233.58753 * 6 5 3 8 8 C 1.53040 * 109.31082 * 305.36455 * 7 6 5 9 9 N 1.46505 * 109.46091 * 181.37875 * 8 7 6 10 10 C 1.36936 * 119.99939 * 154.99675 * 9 8 7 11 11 H 1.08002 * 119.99724 * 0.02562 * 10 9 8 12 12 C 1.38814 * 119.99967 * 180.02562 * 10 9 8 13 13 N 1.31616 * 119.99895 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99770 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47265 * 60.00106 * 14 12 10 16 16 H 1.48502 * 109.47505 * 300.00030 * 14 12 10 17 17 H 1.48500 * 109.47161 * 180.02562 * 14 12 10 18 18 C 1.53050 * 109.53781 * 61.36367 * 8 7 6 19 19 C 1.46928 * 120.62559 * 355.59431 * 5 3 2 20 20 C 1.53063 * 109.43771 * 240.08161 * 2 1 3 21 21 C 1.53411 * 108.28953 * 288.16929 * 20 2 1 22 22 O 1.42828 * 108.37302 * 295.25098 * 21 20 2 23 23 C 1.35842 * 117.86207 * 49.14937 * 22 21 20 24 24 C 1.39146 * 118.50234 * 162.97682 * 23 22 21 25 25 C 1.37964 * 120.21407 * 179.82029 * 24 23 22 26 26 C 1.38288 * 119.96265 * 359.97438 * 25 24 23 27 27 C 1.38097 * 119.98320 * 0.07861 * 26 25 24 28 28 C 1.38318 * 121.78863 * 342.89388 * 23 22 21 29 29 H 1.08997 * 109.47352 * 66.05642 * 1 2 3 30 30 H 1.09004 * 109.47132 * 186.05888 * 1 2 3 31 31 H 1.09009 * 109.47072 * 306.05745 * 1 2 3 32 32 H 1.09001 * 109.58713 * 113.79628 * 6 5 3 33 33 H 1.09007 * 109.58626 * 353.37647 * 6 5 3 34 34 H 1.08994 * 109.50362 * 185.41259 * 7 6 5 35 35 H 1.09002 * 109.49446 * 65.31454 * 7 6 5 36 36 H 1.08992 * 109.46292 * 301.35714 * 8 7 6 37 37 H 0.96998 * 120.00036 * 335.01039 * 9 8 7 38 38 H 0.97000 * 119.99985 * 0.02562 * 13 12 10 39 39 H 1.08998 * 109.49518 * 58.58700 * 18 8 7 40 40 H 1.08998 * 109.49852 * 178.68376 * 18 8 7 41 41 H 1.09003 * 109.58819 * 246.19822 * 19 5 3 42 42 H 1.08997 * 109.59032 * 6.62280 * 19 5 3 43 43 H 1.09004 * 109.69995 * 47.86675 * 20 2 1 44 44 H 1.08998 * 109.69977 * 168.47011 * 20 2 1 45 45 H 1.09000 * 109.68725 * 54.97765 * 21 20 2 46 46 H 1.09010 * 109.68491 * 175.53117 * 21 20 2 47 47 H 1.08000 * 119.88912 * 359.80677 * 24 23 22 48 48 H 1.08003 * 120.01479 * 180.02562 * 25 24 23 49 49 H 1.07997 * 120.00621 * 180.09814 * 26 25 24 50 50 H 1.07998 * 119.84501 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0315 1.4211 0.0000 4 8 1.2431 2.3423 -0.0305 5 7 3.3559 1.6684 0.0337 6 6 3.8633 3.0438 -0.0624 7 6 4.8889 3.1129 -1.1982 8 6 5.9729 2.0578 -0.9662 9 7 6.9733 2.1430 -2.0331 10 6 8.2512 1.7041 -1.8102 11 1 8.5214 1.2949 -0.8479 12 6 9.1991 1.7853 -2.8209 13 7 8.8699 2.2845 -3.9934 14 14 10.9420 1.1860 -2.5170 15 1 10.9153 -0.2565 -2.1653 16 1 11.5428 1.9570 -1.3990 17 1 11.7540 1.3816 -3.7449 18 6 5.3402 0.6643 -0.9707 19 6 4.3197 0.5676 0.1678 20 6 2.0394 -0.7199 -1.2510 21 6 1.7713 -2.2213 -1.0853 22 8 2.5550 -2.7005 0.0084 23 6 2.5085 -2.0061 1.1750 24 6 2.9574 -2.6278 2.3361 25 6 2.9296 -1.9540 3.5397 26 6 2.4547 -0.6563 3.5939 27 6 2.0074 -0.0365 2.4438 28 6 2.0316 -0.7090 1.2324 29 1 -0.3634 0.4170 -0.9392 30 1 -0.3633 -1.0220 0.1085 31 1 -0.3634 0.6049 0.8309 32 1 4.3393 3.3242 0.8772 33 1 3.0380 3.7239 -0.2734 34 1 5.3436 4.1033 -1.2183 35 1 4.3920 2.9209 -2.1492 36 1 6.4525 2.2355 -0.0037 37 1 6.7306 2.5104 -2.8974 38 1 7.9649 2.5960 -4.1511 39 1 4.8391 0.4954 -1.9238 40 1 6.1160 -0.0880 -0.8287 41 1 4.8330 0.6459 1.1262 42 1 3.7956 -0.3863 0.1086 43 1 1.5124 -0.3474 -2.1295 44 1 3.1098 -0.5481 -1.3636 45 1 0.7136 -2.3848 -0.8786 46 1 2.0532 -2.7476 -1.9973 47 1 3.3286 -3.6411 2.2950 48 1 3.2792 -2.4394 4.4389 49 1 2.4341 -0.1276 4.5354 50 1 1.6366 0.9769 2.4888 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997194329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:20 Heat of formation + Delta-G solvation = -27.317291 kcal Electronic energy + Delta-G solvation = -32254.515863 eV Core-core repulsion = 28247.221906 eV Total energy + Delta-G solvation = -4007.293957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.92900 -39.66077 -37.73841 -37.60787 -35.48772 -34.70488 -32.16847 -30.99292 -30.89714 -30.54264 -29.05220 -28.51988 -25.72453 -24.54410 -23.79151 -23.15886 -22.91811 -22.30981 -20.68330 -19.92020 -18.72291 -18.14971 -17.37245 -17.30194 -16.56805 -16.33102 -15.90658 -15.22294 -15.04333 -14.75546 -14.53029 -14.26017 -14.13116 -13.92711 -13.81563 -13.67347 -13.59111 -13.48240 -12.90581 -12.76664 -12.42115 -12.33096 -12.15190 -12.10214 -11.95876 -11.76363 -11.57178 -11.26799 -11.03201 -10.87405 -10.86518 -10.80513 -10.58487 -10.45209 -10.09018 -9.98674 -9.74197 -9.20041 -9.01901 -8.90163 -8.54879 -8.35715 -7.07542 -6.12600 -3.13012 1.04289 1.19986 2.52489 2.98043 3.04761 3.50012 3.50317 3.53219 3.70775 4.17078 4.23577 4.36015 4.45858 4.64169 4.72627 4.81084 4.86024 4.95463 5.05938 5.13039 5.17232 5.20444 5.23492 5.25030 5.27410 5.35139 5.49390 5.52064 5.53407 5.59667 5.61580 5.66748 5.69383 5.79178 5.86576 5.92039 5.99500 6.05792 6.13935 6.20215 6.21260 6.28688 6.31695 6.38785 6.51931 6.53611 6.79638 6.93029 7.18968 7.44149 7.77864 8.13473 8.72932 9.19398 10.05938 10.20992 11.35625 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.003440 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.096860 B = 8137.759585 C = 8789.085298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.033 4.033 3 C 0.530 3.470 4 O -0.545 6.545 5 N -0.596 5.596 6 C 0.116 3.884 7 C -0.139 4.139 8 C 0.185 3.815 9 N -0.735 5.735 10 C -0.331 4.331 11 H 0.064 0.936 12 C -0.044 4.044 13 N -0.943 5.943 14 Si 1.078 2.922 15 H -0.295 1.295 16 H -0.295 1.295 17 H -0.285 1.285 18 C -0.149 4.149 19 C 0.096 3.904 20 C -0.167 4.167 21 C 0.064 3.936 22 O -0.312 6.312 23 C 0.137 3.863 24 C -0.148 4.148 25 C -0.083 4.083 26 C -0.149 4.149 27 C -0.076 4.076 28 C -0.148 4.148 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.366 0.634 38 H 0.255 0.745 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.069 0.931 46 H 0.114 0.886 47 H 0.132 0.868 48 H 0.129 0.871 49 H 0.124 0.876 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.843 -8.978 12.567 23.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.037 4.037 3 C 0.318 3.682 4 O -0.423 6.423 5 N -0.328 5.328 6 C -0.007 4.007 7 C -0.178 4.178 8 C 0.075 3.925 9 N -0.377 5.377 10 C -0.462 4.462 11 H 0.082 0.918 12 C -0.241 4.241 13 N -0.589 5.589 14 Si 0.909 3.091 15 H -0.223 1.223 16 H -0.223 1.223 17 H -0.210 1.210 18 C -0.191 4.191 19 C -0.027 4.027 20 C -0.205 4.205 21 C -0.011 4.011 22 O -0.226 6.226 23 C 0.092 3.908 24 C -0.167 4.167 25 C -0.101 4.101 26 C -0.167 4.167 27 C -0.094 4.094 28 C -0.149 4.149 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.200 0.800 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.087 0.913 46 H 0.132 0.868 47 H 0.150 0.850 48 H 0.147 0.853 49 H 0.142 0.858 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.524 -8.911 12.000 22.281 hybrid contribution -1.572 0.442 0.377 1.676 sum -18.096 -8.469 12.377 23.503 Atomic orbital electron populations 1.21733 0.90876 1.01792 1.03648 1.19649 0.97896 0.92508 0.93607 1.20126 0.82100 0.90142 0.75871 1.90671 1.54931 1.45873 1.50834 1.48062 1.05288 1.08292 1.71184 1.21622 0.97574 0.82538 0.98937 1.22218 0.96627 1.00937 0.98051 1.20087 0.88386 0.90877 0.93141 1.42440 1.07851 1.75794 1.11597 1.20026 0.87848 1.38432 0.99933 0.91786 1.25752 1.04239 1.00794 0.93357 1.70883 1.20894 1.44152 1.22935 0.83263 0.75078 0.75501 0.75234 1.22251 1.22264 1.21038 1.22676 0.97519 1.02085 0.96778 1.22243 0.90933 0.89789 0.99741 1.22684 1.04683 0.95756 0.97329 1.23028 0.95339 0.93969 0.88723 1.86032 1.65516 1.51886 1.19131 1.18635 0.96504 0.89594 0.86062 1.20602 1.04957 1.01038 0.90069 1.20955 0.97672 0.94455 0.97067 1.20999 1.01835 0.95580 0.98303 1.20920 0.97607 0.99447 0.91441 1.19412 1.06417 0.93971 0.95072 0.91382 0.92068 0.91333 0.91520 0.89335 0.90588 0.92011 0.93322 0.80046 0.93403 0.92451 0.90601 0.91643 0.89023 0.88906 0.88189 0.91297 0.86838 0.85003 0.85300 0.85789 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 7.50 37.16 0.28 -1.00 16 2 C -0.03 -0.39 0.39 -156.75 -0.06 -0.45 16 3 C 0.53 7.61 5.22 -10.99 -0.06 7.55 16 4 O -0.55 -9.20 15.34 5.55 0.09 -9.11 16 5 N -0.60 -8.55 2.97 -172.77 -0.51 -9.06 16 6 C 0.12 1.69 6.42 -3.72 -0.02 1.67 16 7 C -0.14 -2.30 5.55 -26.61 -0.15 -2.45 16 8 C 0.19 3.60 2.73 -67.88 -0.19 3.41 16 9 N -0.74 -18.03 5.12 -53.38 -0.27 -18.30 16 10 C -0.33 -9.14 9.93 -15.06 -0.15 -9.29 16 11 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 12 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 13 N -0.94 -28.96 13.70 55.49 0.76 -28.20 16 14 Si 1.08 25.69 29.92 -169.99 -5.09 20.60 16 15 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 18 C -0.15 -2.59 5.38 -26.61 -0.14 -2.73 16 19 C 0.10 1.37 4.62 -3.71 -0.02 1.35 16 20 C -0.17 -1.78 4.54 -26.49 -0.12 -1.90 16 21 C 0.06 0.58 6.96 37.37 0.26 0.84 16 22 O -0.31 -3.55 10.25 -19.25 -0.20 -3.74 16 23 C 0.14 1.57 5.44 -39.22 -0.21 1.36 16 24 C -0.15 -1.51 9.94 -39.34 -0.39 -1.90 16 25 C -0.08 -0.76 10.04 -39.66 -0.40 -1.15 16 26 C -0.15 -1.43 10.04 -39.61 -0.40 -1.83 16 27 C -0.08 -0.85 8.96 -39.51 -0.35 -1.20 16 28 C -0.15 -1.69 2.67 -104.43 -0.28 -1.97 16 29 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.06 0.53 6.89 -51.93 -0.36 0.17 16 31 H 0.07 0.76 7.94 -51.92 -0.41 0.35 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.31 7.03 -51.93 -0.37 0.94 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 37 H 0.37 9.36 6.63 -40.82 -0.27 9.09 16 38 H 0.25 7.71 6.77 -40.82 -0.28 7.43 16 39 H 0.06 1.02 7.40 -51.93 -0.38 0.64 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.09 1.24 2.45 -51.93 -0.13 1.11 16 43 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 44 H 0.10 1.25 4.34 -51.93 -0.23 1.02 16 45 H 0.07 0.53 6.68 -51.93 -0.35 0.18 16 46 H 0.11 0.82 8.14 -51.92 -0.42 0.40 16 47 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 48 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 49 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 50 H 0.12 1.42 7.36 -52.49 -0.39 1.03 16 LS Contribution 378.98 15.07 5.71 5.71 Total: -1.00 -32.68 378.98 -9.43 -42.11 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -7.42 Total: 11.05 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -2.49 Total: -11.06 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.03 Total: -55.56 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.11 Total: -12.86 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.09 Total: 20.60 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.68 -9.43 -42.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997194329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.788 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds