Wall clock time and date at job start Sat Apr 11 2020 07:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 110.83890 * 2 1 4 4 C 1.54700 * 110.94780 * 236.26860 * 2 1 3 5 5 O 1.43847 * 102.77991 * 267.25667 * 4 2 1 6 6 C 1.35998 * 109.34370 * 332.33124 * 5 4 2 7 7 C 1.39590 * 129.70522 * 198.48010 * 6 5 4 8 8 C 1.37468 * 120.43275 * 180.50633 * 7 6 5 9 9 C 1.39764 * 120.19763 * 0.02562 * 8 7 6 10 10 C 1.47597 * 120.26270 * 179.82796 * 9 8 7 11 11 O 1.21585 * 119.99922 * 221.68571 * 10 9 8 12 12 N 1.34773 * 120.00262 * 41.69224 * 10 9 8 13 13 C 1.46922 * 120.62863 * 5.56551 * 12 10 9 14 14 C 1.53630 * 108.54541 * 126.37009 * 13 12 10 15 15 C 1.53043 * 109.23576 * 54.85573 * 14 13 12 16 16 C 1.53037 * 109.53890 * 298.50972 * 15 14 13 17 17 H 1.08996 * 109.50024 * 301.41379 * 16 15 14 18 18 N 1.46499 * 109.49517 * 181.31768 * 16 15 14 19 19 C 1.36939 * 119.99964 * 155.16127 * 18 16 15 20 20 H 1.07997 * 119.99829 * 0.02562 * 19 18 16 21 21 C 1.38819 * 120.00160 * 179.97438 * 19 18 16 22 22 N 1.31611 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99755 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47335 * 60.00349 * 23 21 19 25 25 H 1.48504 * 109.46714 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47160 * 299.99860 * 23 21 19 27 27 C 1.46928 * 120.63157 * 185.84753 * 12 10 9 28 28 C 1.39807 * 119.46527 * 359.85329 * 9 8 7 29 29 C 1.37305 * 119.86312 * 359.97438 * 28 9 8 30 30 H 1.08993 * 109.47750 * 59.30197 * 1 2 3 31 31 H 1.09002 * 109.47297 * 299.29687 * 1 2 3 32 32 H 1.09007 * 109.46745 * 179.30590 * 1 2 3 33 33 H 1.08992 * 109.47508 * 60.69823 * 3 2 1 34 34 H 1.09005 * 109.47526 * 180.70669 * 3 2 1 35 35 H 1.09003 * 109.47141 * 300.69826 * 3 2 1 36 36 H 1.09001 * 110.74549 * 25.60327 * 4 2 1 37 37 H 1.09008 * 110.74616 * 148.93805 * 4 2 1 38 38 H 1.08003 * 119.78888 * 0.49221 * 7 6 5 39 39 H 1.07992 * 119.90369 * 179.97438 * 8 7 6 40 40 H 1.09007 * 109.59065 * 246.20540 * 13 12 10 41 41 H 1.09007 * 109.58945 * 6.62782 * 13 12 10 42 42 H 1.08999 * 109.63242 * 294.86714 * 14 13 12 43 43 H 1.09001 * 109.45646 * 174.73940 * 14 13 12 44 44 H 1.09008 * 109.45569 * 178.49144 * 15 14 13 45 45 H 1.09001 * 109.44733 * 58.53041 * 15 14 13 46 46 H 0.97000 * 120.00536 * 335.16082 * 18 16 15 47 47 H 0.97004 * 119.99707 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.58521 * 353.37541 * 27 12 10 49 49 H 1.09006 * 109.58326 * 113.79354 * 27 12 10 50 50 H 1.08004 * 120.06864 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0742 1.4299 0.0000 4 6 2.0830 -0.8023 -1.2015 5 8 2.2595 -2.1193 -0.6506 6 6 2.4856 -2.0215 0.6869 7 6 3.0416 -2.9509 1.5676 8 6 3.1735 -2.6524 2.9029 9 6 2.7506 -1.4131 3.3914 10 6 2.8881 -1.0925 4.8255 11 8 1.9894 -0.5176 5.4088 12 7 4.0098 -1.4369 5.4886 13 6 5.1524 -2.0214 4.7734 14 6 6.4063 -1.1952 5.0979 15 6 6.5849 -1.1248 6.6162 16 6 5.3744 -0.4284 7.2421 17 1 5.2725 0.5720 6.8217 18 7 5.5607 -0.3335 8.6921 19 6 4.9203 0.6470 9.4020 20 1 4.2776 1.3499 8.8929 21 6 5.0964 0.7366 10.7760 22 7 5.8792 -0.1203 11.3964 23 14 4.2221 2.0737 11.7443 24 1 2.7539 1.9244 11.5799 25 1 4.5744 1.9542 13.1820 26 1 4.6438 3.4056 11.2409 27 6 4.1109 -1.2407 6.9411 28 6 2.1957 -0.4798 2.5106 29 6 2.0718 -0.7868 1.1781 30 1 -0.3634 0.5246 -0.8836 31 1 -0.3634 0.5029 0.8962 32 1 -0.3633 -1.0277 -0.0125 33 1 1.7335 1.9484 0.8961 34 1 3.1639 1.4040 -0.0127 35 1 1.7131 1.9561 -0.8837 36 1 1.3626 -0.8187 -2.0193 37 1 3.0366 -0.3917 -1.5339 38 1 3.3701 -3.9109 1.1975 39 1 3.6045 -3.3779 3.5768 40 1 5.2971 -3.0524 5.0963 41 1 4.9637 -1.9956 3.7001 42 1 6.2947 -0.1876 4.6975 43 1 7.2796 -1.6699 4.6504 44 1 7.4886 -0.5619 6.8498 45 1 6.6715 -2.1341 7.0186 46 1 6.1376 -0.9650 9.1495 47 1 6.0020 -0.0579 12.3566 48 1 3.2348 -0.6996 7.2986 49 1 4.1723 -2.2093 7.4373 50 1 1.8661 0.4811 2.8775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999667393.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:32 Heat of formation + Delta-G solvation = -27.528115 kcal Electronic energy + Delta-G solvation = -30487.925362 eV Core-core repulsion = 26480.622263 eV Total energy + Delta-G solvation = -4007.303099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.77397 -40.08617 -37.66377 -36.92246 -35.55240 -34.45361 -32.33261 -31.21524 -30.76372 -30.31254 -28.12528 -27.77912 -26.95919 -25.51326 -24.10372 -23.34263 -22.89614 -21.83490 -20.53103 -19.98633 -18.95768 -17.77573 -17.15074 -17.06810 -16.57976 -16.19870 -15.92446 -15.14356 -14.76606 -14.63884 -14.43370 -14.19479 -14.03483 -13.93933 -13.88948 -13.44676 -13.39283 -13.26138 -13.09226 -12.87740 -12.67482 -12.45012 -12.39858 -12.20076 -12.02973 -11.83325 -11.41305 -11.29673 -11.17167 -10.97117 -10.84068 -10.80788 -10.62856 -10.52873 -10.22116 -9.82070 -9.78245 -9.57821 -9.20283 -9.05503 -8.46057 -8.27928 -6.98917 -5.77512 -3.07208 0.75894 1.04492 2.77102 2.89299 3.18107 3.46953 3.50561 3.52585 3.54585 3.85764 4.11023 4.42030 4.48456 4.55785 4.59594 4.70723 4.86026 4.96285 4.96655 5.01851 5.09257 5.11294 5.20847 5.26280 5.27972 5.38824 5.42648 5.45742 5.49297 5.54636 5.63729 5.72069 5.75607 5.80840 5.82973 5.85561 5.96069 6.04643 6.08003 6.12017 6.18580 6.19307 6.23964 6.36409 6.50619 6.75017 6.81523 6.84820 7.02455 7.65925 7.72822 8.37041 8.41433 9.52533 10.06565 10.41941 11.44709 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017918 B = 0.002470 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.275552 B =11335.341594 C =12176.992636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 C -0.138 4.138 4 C 0.058 3.942 5 O -0.302 6.302 6 C 0.125 3.875 7 C -0.145 4.145 8 C -0.053 4.053 9 C -0.149 4.149 10 C 0.557 3.443 11 O -0.536 6.536 12 N -0.600 5.600 13 C 0.098 3.902 14 C -0.129 4.129 15 C -0.126 4.126 16 C 0.169 3.831 17 H 0.051 0.949 18 N -0.718 5.718 19 C -0.243 4.243 20 H 0.071 0.929 21 C -0.011 4.011 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.092 3.908 28 C -0.013 4.013 29 C -0.171 4.171 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.134 0.866 39 H 0.140 0.860 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.091 0.909 49 H 0.062 0.938 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.180 -4.591 -28.461 29.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.052 4.052 3 C -0.195 4.195 4 C -0.017 4.017 5 O -0.215 6.215 6 C 0.079 3.921 7 C -0.164 4.164 8 C -0.072 4.072 9 C -0.153 4.153 10 C 0.345 3.655 11 O -0.414 6.414 12 N -0.333 5.333 13 C -0.025 4.025 14 C -0.168 4.168 15 C -0.165 4.165 16 C 0.058 3.942 17 H 0.069 0.931 18 N -0.359 5.359 19 C -0.374 4.374 20 H 0.089 0.911 21 C -0.207 4.207 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.032 4.032 28 C -0.032 4.032 29 C -0.172 4.172 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.152 0.848 39 H 0.158 0.842 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.110 0.890 49 H 0.081 0.919 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.745 -4.314 -28.173 28.894 hybrid contribution -0.281 0.538 0.795 1.000 sum -5.026 -3.777 -27.378 28.090 Atomic orbital electron populations 1.21802 0.92192 1.02622 1.02699 1.20803 0.96937 0.96092 0.91370 1.21787 1.01270 0.93599 1.02840 1.24049 1.01621 0.79953 0.96085 1.86799 1.86378 1.29955 1.18367 1.19780 0.93887 0.94507 0.83952 1.20152 1.04207 1.00095 0.91937 1.21124 0.95924 0.95769 0.94366 1.19825 1.05499 0.96031 0.93929 1.18173 0.82419 0.78955 0.85958 1.90804 1.40230 1.41408 1.68969 1.48184 1.13918 1.61596 1.09553 1.22137 0.86138 0.97008 0.97204 1.21959 0.96819 1.00588 0.97439 1.21832 0.99652 1.01263 0.93716 1.20479 0.90992 0.96426 0.86320 0.93144 1.42369 1.56061 1.36784 1.00665 1.19231 1.21580 1.06709 0.89846 0.91098 1.24742 1.00163 0.99192 0.96573 1.69650 1.41400 1.38166 1.08864 0.86266 0.79400 0.81501 0.79050 1.21094 1.21686 1.21222 1.22814 1.02885 1.01055 0.76420 1.20236 0.93784 0.98996 0.90198 1.20553 1.05263 0.96512 0.94895 0.91742 0.91529 0.92074 0.91473 0.91956 0.91774 0.87486 0.90170 0.84825 0.84190 0.91319 0.89489 0.91607 0.91029 0.91426 0.92021 0.78071 0.93427 0.89047 0.91925 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.61 37.15 0.32 -0.65 16 2 C -0.05 -0.40 1.02 -154.29 -0.16 -0.56 16 3 C -0.14 -0.90 8.53 37.16 0.32 -0.58 16 4 C 0.06 0.39 7.10 38.05 0.27 0.66 16 5 O -0.30 -2.97 11.09 -19.73 -0.22 -3.19 16 6 C 0.12 1.30 7.05 -38.73 -0.27 1.03 16 7 C -0.15 -1.40 10.05 -39.36 -0.40 -1.79 16 8 C -0.05 -0.55 7.38 -39.29 -0.29 -0.84 16 9 C -0.15 -1.95 5.08 -104.92 -0.53 -2.48 16 10 C 0.56 9.25 7.30 -12.44 -0.09 9.15 16 11 O -0.54 -11.15 16.37 5.29 0.09 -11.06 16 12 N -0.60 -9.34 2.97 -173.70 -0.52 -9.85 16 13 C 0.10 1.14 4.96 -3.49 -0.02 1.12 16 14 C -0.13 -1.56 6.10 -26.38 -0.16 -1.72 16 15 C -0.13 -1.98 5.35 -26.69 -0.14 -2.12 16 16 C 0.17 3.37 2.92 -67.81 -0.20 3.17 16 17 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 18 N -0.72 -17.89 5.13 -53.31 -0.27 -18.16 16 19 C -0.24 -6.80 9.93 -15.06 -0.15 -6.95 16 20 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 23 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 24 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C 0.09 1.76 6.02 -3.71 -0.02 1.74 16 28 C -0.01 -0.16 9.53 -39.33 -0.37 -0.54 16 29 C -0.17 -1.78 5.04 -104.13 -0.52 -2.30 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.11 0.50 7.92 -51.93 -0.41 0.09 16 37 H 0.08 0.45 7.91 -51.92 -0.41 0.04 16 38 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 39 H 0.14 1.23 6.71 -52.49 -0.35 0.88 16 40 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 41 H 0.09 0.86 4.80 -51.93 -0.25 0.61 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.39 10.06 7.80 -40.82 -0.32 9.74 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.09 2.05 7.00 -51.93 -0.36 1.68 16 49 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 50 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 397.10 15.07 5.98 5.98 Total: -1.00 -33.37 397.10 -9.74 -43.12 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.99 Total: 6.84 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -2.52 Total: -4.07 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.06 Total: -55.39 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.13 Total: -14.25 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.37 -9.74 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999667393.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.587 kcal (2) G-P(sol) polarization free energy of solvation -33.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds