Wall clock time and date at job start Sat Apr 11 2020 07:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 110.83890 * 2 1 4 4 C 1.54700 * 110.94780 * 236.26860 * 2 1 3 5 5 O 1.43847 * 102.77991 * 267.25667 * 4 2 1 6 6 C 1.35998 * 109.34370 * 332.33124 * 5 4 2 7 7 C 1.39590 * 129.70522 * 198.48010 * 6 5 4 8 8 C 1.37468 * 120.43275 * 180.50633 * 7 6 5 9 9 C 1.39764 * 120.19763 * 0.02562 * 8 7 6 10 10 C 1.47597 * 120.26270 * 179.82796 * 9 8 7 11 11 O 1.21585 * 119.99922 * 221.68571 * 10 9 8 12 12 N 1.34773 * 120.00262 * 41.69224 * 10 9 8 13 13 C 1.46922 * 120.62863 * 5.56551 * 12 10 9 14 14 C 1.53630 * 108.54541 * 126.37009 * 13 12 10 15 15 C 1.53043 * 109.23576 * 54.85573 * 14 13 12 16 16 C 1.53037 * 109.53890 * 298.50972 * 15 14 13 17 17 H 1.08996 * 109.50024 * 301.41379 * 16 15 14 18 18 N 1.46499 * 109.49517 * 181.31768 * 16 15 14 19 19 C 1.36939 * 119.99964 * 155.16127 * 18 16 15 20 20 H 1.07997 * 119.99829 * 0.02562 * 19 18 16 21 21 C 1.38819 * 120.00160 * 179.97438 * 19 18 16 22 22 N 1.31611 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99755 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47335 * 60.00349 * 23 21 19 25 25 H 1.48504 * 109.46714 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47160 * 299.99860 * 23 21 19 27 27 C 1.46928 * 120.63157 * 185.84753 * 12 10 9 28 28 C 1.39807 * 119.46527 * 359.85329 * 9 8 7 29 29 C 1.37305 * 119.86312 * 359.97438 * 28 9 8 30 30 H 1.08993 * 109.47750 * 59.30197 * 1 2 3 31 31 H 1.09002 * 109.47297 * 299.29687 * 1 2 3 32 32 H 1.09007 * 109.46745 * 179.30590 * 1 2 3 33 33 H 1.08992 * 109.47508 * 60.69823 * 3 2 1 34 34 H 1.09005 * 109.47526 * 180.70669 * 3 2 1 35 35 H 1.09003 * 109.47141 * 300.69826 * 3 2 1 36 36 H 1.09001 * 110.74549 * 25.60327 * 4 2 1 37 37 H 1.09008 * 110.74616 * 148.93805 * 4 2 1 38 38 H 1.08003 * 119.78888 * 0.49221 * 7 6 5 39 39 H 1.07992 * 119.90369 * 179.97438 * 8 7 6 40 40 H 1.09007 * 109.59065 * 246.20540 * 13 12 10 41 41 H 1.09007 * 109.58945 * 6.62782 * 13 12 10 42 42 H 1.08999 * 109.63242 * 294.86714 * 14 13 12 43 43 H 1.09001 * 109.45646 * 174.73940 * 14 13 12 44 44 H 1.09008 * 109.45569 * 178.49144 * 15 14 13 45 45 H 1.09001 * 109.44733 * 58.53041 * 15 14 13 46 46 H 0.97000 * 120.00536 * 335.16082 * 18 16 15 47 47 H 0.97004 * 119.99707 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.58521 * 353.37541 * 27 12 10 49 49 H 1.09006 * 109.58326 * 113.79354 * 27 12 10 50 50 H 1.08004 * 120.06864 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0742 1.4299 0.0000 4 6 2.0830 -0.8023 -1.2015 5 8 2.2595 -2.1193 -0.6506 6 6 2.4856 -2.0215 0.6869 7 6 3.0416 -2.9509 1.5676 8 6 3.1735 -2.6524 2.9029 9 6 2.7506 -1.4131 3.3914 10 6 2.8881 -1.0925 4.8255 11 8 1.9894 -0.5176 5.4088 12 7 4.0098 -1.4369 5.4886 13 6 5.1524 -2.0214 4.7734 14 6 6.4063 -1.1952 5.0979 15 6 6.5849 -1.1248 6.6162 16 6 5.3744 -0.4284 7.2421 17 1 5.2725 0.5720 6.8217 18 7 5.5607 -0.3335 8.6921 19 6 4.9203 0.6470 9.4020 20 1 4.2776 1.3499 8.8929 21 6 5.0964 0.7366 10.7760 22 7 5.8792 -0.1203 11.3964 23 14 4.2221 2.0737 11.7443 24 1 2.7539 1.9244 11.5799 25 1 4.5744 1.9542 13.1820 26 1 4.6438 3.4056 11.2409 27 6 4.1109 -1.2407 6.9411 28 6 2.1957 -0.4798 2.5106 29 6 2.0718 -0.7868 1.1781 30 1 -0.3634 0.5246 -0.8836 31 1 -0.3634 0.5029 0.8962 32 1 -0.3633 -1.0277 -0.0125 33 1 1.7335 1.9484 0.8961 34 1 3.1639 1.4040 -0.0127 35 1 1.7131 1.9561 -0.8837 36 1 1.3626 -0.8187 -2.0193 37 1 3.0366 -0.3917 -1.5339 38 1 3.3701 -3.9109 1.1975 39 1 3.6045 -3.3779 3.5768 40 1 5.2971 -3.0524 5.0963 41 1 4.9637 -1.9956 3.7001 42 1 6.2947 -0.1876 4.6975 43 1 7.2796 -1.6699 4.6504 44 1 7.4886 -0.5619 6.8498 45 1 6.6715 -2.1341 7.0186 46 1 6.1376 -0.9650 9.1495 47 1 6.0020 -0.0579 12.3566 48 1 3.2348 -0.6996 7.2986 49 1 4.1723 -2.2093 7.4373 50 1 1.8661 0.4811 2.8775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999667393.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:31 Heat of formation + Delta-G solvation = -48.185733 kcal Electronic energy + Delta-G solvation = -30488.821144 eV Core-core repulsion = 26480.622263 eV Total energy + Delta-G solvation = -4008.198881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.51986 -41.30481 -38.88430 -38.05489 -36.29775 -36.09857 -33.96670 -32.74627 -31.64369 -31.35060 -29.72546 -28.31680 -27.54830 -26.74751 -25.91667 -24.37051 -23.81928 -23.19431 -21.77124 -20.90814 -20.12370 -19.14939 -18.67332 -18.01122 -17.46855 -17.14704 -16.92012 -16.77186 -16.19069 -15.68237 -15.51096 -15.45920 -15.25036 -15.09508 -14.89550 -14.61470 -14.54097 -14.09610 -13.99631 -13.89598 -13.78387 -13.69153 -13.62306 -13.12635 -12.93667 -12.89970 -12.79328 -12.50173 -12.40209 -12.26943 -12.08531 -11.92590 -11.88976 -11.76951 -11.67369 -11.50049 -11.35939 -11.13040 -10.93357 -10.01347 -9.79638 -9.22399 -9.02408 -7.99788 -5.28921 -0.14236 0.23287 1.42983 1.45804 1.52079 1.62053 1.91525 2.24403 2.52480 2.61034 3.22264 3.32844 3.39339 3.57262 3.73776 3.75296 3.91816 3.98092 4.03064 4.04557 4.12626 4.23029 4.30846 4.33755 4.37251 4.43394 4.54436 4.59306 4.60177 4.70072 4.71725 4.77646 4.86565 4.87704 4.89694 4.90691 4.98329 5.04845 5.08626 5.13821 5.18067 5.26424 5.28005 5.32878 5.36883 5.39719 5.42624 5.46079 5.57011 6.07229 6.22962 6.40461 7.08212 7.29681 8.01670 8.27629 9.22555 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017918 B = 0.002470 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.275552 B =11335.341594 C =12176.992636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 C -0.136 4.136 4 C 0.056 3.944 5 O -0.310 6.310 6 C 0.123 3.877 7 C -0.139 4.139 8 C -0.044 4.044 9 C -0.168 4.168 10 C 0.553 3.447 11 O -0.593 6.593 12 N -0.597 5.597 13 C 0.094 3.906 14 C -0.121 4.121 15 C -0.117 4.117 16 C 0.168 3.832 17 H 0.027 0.973 18 N -0.729 5.729 19 C -0.247 4.247 20 H 0.063 0.937 21 C -0.066 4.066 22 N -0.963 5.963 23 Si 0.967 3.033 24 H -0.284 1.284 25 H -0.288 1.288 26 H -0.278 1.278 27 C 0.107 3.893 28 C -0.026 4.026 29 C -0.176 4.176 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.132 0.868 37 H 0.096 0.904 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.057 0.943 43 H 0.113 0.887 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.378 0.622 47 H 0.253 0.747 48 H 0.047 0.953 49 H 0.065 0.935 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.435 -5.820 -31.966 32.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.054 4.054 3 C -0.193 4.193 4 C -0.018 4.018 5 O -0.223 6.223 6 C 0.077 3.923 7 C -0.158 4.158 8 C -0.063 4.063 9 C -0.171 4.171 10 C 0.343 3.657 11 O -0.475 6.475 12 N -0.328 5.328 13 C -0.027 4.027 14 C -0.160 4.160 15 C -0.156 4.156 16 C 0.058 3.942 17 H 0.046 0.954 18 N -0.369 5.369 19 C -0.379 4.379 20 H 0.081 0.919 21 C -0.259 4.259 22 N -0.612 5.612 23 Si 0.796 3.204 24 H -0.210 1.210 25 H -0.214 1.214 26 H -0.204 1.204 27 C -0.018 4.018 28 C -0.045 4.045 29 C -0.177 4.177 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.150 0.850 37 H 0.114 0.886 38 H 0.180 0.820 39 H 0.178 0.822 40 H 0.114 0.886 41 H 0.130 0.870 42 H 0.076 0.924 43 H 0.131 0.869 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.211 0.789 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.979 -5.555 -31.751 32.478 hybrid contribution -0.549 0.921 1.732 2.037 sum -4.528 -4.633 -30.019 30.710 Atomic orbital electron populations 1.21803 0.91901 1.02225 1.03252 1.20920 0.97182 0.96559 0.90703 1.21776 1.01191 0.93036 1.03271 1.24322 1.03146 0.78402 0.95932 1.86794 1.86090 1.31640 1.17778 1.20040 0.93281 0.94421 0.84562 1.20440 1.03143 1.00929 0.91251 1.21262 0.95269 0.94646 0.95098 1.19554 1.08183 0.97855 0.91522 1.18799 0.81702 0.77767 0.87389 1.90765 1.42223 1.44074 1.70455 1.48196 1.15136 1.61382 1.08081 1.22515 0.84043 0.97891 0.98275 1.21955 0.98687 1.00910 0.94399 1.21741 0.96747 1.00857 0.96230 1.20632 0.93565 0.96071 0.83912 0.95447 1.42488 1.55737 1.36044 1.02607 1.19463 1.21022 1.06978 0.90420 0.91905 1.25472 1.01419 1.01559 0.97489 1.69777 1.42905 1.39779 1.08778 0.85314 0.78178 0.79286 0.77623 1.21018 1.21414 1.20417 1.22259 1.00299 1.00174 0.79086 1.20166 0.94557 0.98564 0.91197 1.20777 1.04829 0.97390 0.94666 0.89287 0.92889 0.92942 0.92830 0.92042 0.89534 0.84980 0.88643 0.81998 0.82178 0.88628 0.86970 0.92389 0.86918 0.92040 0.91034 0.78894 0.93771 0.93437 0.91678 0.86636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 8.61 71.98 0.62 -1.10 16 2 C -0.05 -0.73 1.02 -52.04 -0.05 -0.78 16 3 C -0.14 -1.56 8.53 71.98 0.61 -0.95 16 4 C 0.06 0.58 7.10 72.56 0.51 1.09 16 5 O -0.31 -5.11 11.09 -93.53 -1.04 -6.15 16 6 C 0.12 2.26 7.05 22.82 0.16 2.43 16 7 C -0.14 -2.22 10.05 22.41 0.23 -1.99 16 8 C -0.04 -0.81 7.38 22.46 0.17 -0.65 16 9 C -0.17 -4.32 5.08 -20.06 -0.10 -4.43 16 10 C 0.55 19.01 7.30 86.71 0.63 19.64 16 11 O -0.59 -26.53 16.37 -3.98 -0.07 -26.60 16 12 N -0.60 -18.62 2.97 -821.72 -2.44 -21.06 16 13 C 0.09 1.91 4.96 86.51 0.43 2.34 16 14 C -0.12 -2.59 6.10 30.82 0.19 -2.40 16 15 C -0.12 -3.56 5.35 30.62 0.16 -3.39 16 16 C 0.17 6.91 2.92 45.07 0.13 7.04 16 17 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 18 N -0.73 -37.61 5.13 -322.58 -1.65 -39.26 16 19 C -0.25 -14.37 9.93 84.03 0.83 -13.53 16 20 H 0.06 3.68 7.83 -2.91 -0.02 3.65 16 21 C -0.07 -3.92 5.50 84.87 0.47 -3.46 16 22 N -0.96 -59.27 13.06 21.65 0.28 -58.98 16 23 Si 0.97 47.95 29.55 68.60 2.03 49.97 16 24 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 27 C 0.11 4.26 6.02 86.36 0.52 4.78 16 28 C -0.03 -0.64 9.53 22.43 0.21 -0.42 16 29 C -0.18 -3.45 5.04 -19.55 -0.10 -3.55 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.72 8.13 -2.38 -0.02 0.70 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.13 0.71 7.92 -2.39 -0.02 0.69 16 37 H 0.10 0.73 7.91 -2.38 -0.02 0.71 16 38 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.16 2.23 6.71 -2.91 -0.02 2.21 16 40 H 0.10 1.53 8.13 -2.38 -0.02 1.51 16 41 H 0.11 1.81 4.80 -2.38 -0.01 1.80 16 42 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.38 20.34 7.80 -92.71 -0.72 19.62 16 47 H 0.25 15.12 8.31 -92.71 -0.77 14.34 16 48 H 0.05 2.29 7.00 -2.39 -0.02 2.28 16 49 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 50 H 0.12 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -77.14 397.10 2.96 -74.17 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.22 Total: 27.24 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 5.63 Total: 0.66 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -3.81 Total: -119.30 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -1.10 Total: -32.75 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.97 kcal Total: -77.14 2.96 -74.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999667393.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.989 kcal (2) G-P(sol) polarization free energy of solvation -77.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds