Wall clock time and date at job start Sat Apr 11 2020 07:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50691 * 109.40322 * 2 1 4 4 O 1.21281 * 120.00303 * 354.48103 * 3 2 1 5 5 N 1.34780 * 120.00168 * 174.48483 * 3 2 1 6 6 C 1.46924 * 120.62671 * 4.75885 * 5 3 2 7 7 C 1.52761 * 109.01085 * 233.58531 * 6 5 3 8 8 C 1.53040 * 109.38304 * 305.59510 * 7 6 5 9 9 C 1.53038 * 109.53934 * 61.23788 * 8 7 6 10 10 H 1.08999 * 109.49833 * 58.58575 * 9 8 7 11 11 N 1.46499 * 109.52273 * 178.66506 * 9 8 7 12 12 C 1.36940 * 120.00323 * 274.85219 * 11 9 8 13 13 H 1.08008 * 119.99484 * 0.02562 * 12 11 9 14 14 C 1.38811 * 120.00433 * 180.02562 * 12 11 9 15 15 N 1.31627 * 119.99707 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00179 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47125 * 89.99734 * 16 14 12 18 18 H 1.48499 * 109.46632 * 209.99841 * 16 14 12 19 19 H 1.48495 * 109.46741 * 329.99550 * 16 14 12 20 20 C 1.46926 * 120.63146 * 185.05200 * 5 3 2 21 21 C 1.53103 * 109.47202 * 240.10546 * 2 1 3 22 22 C 1.53408 * 108.27710 * 288.23403 * 21 2 1 23 23 O 1.42821 * 108.38829 * 295.29928 * 22 21 2 24 24 C 1.35838 * 117.86168 * 49.21749 * 23 22 21 25 25 C 1.39156 * 118.50339 * 162.86892 * 24 23 22 26 26 C 1.37963 * 120.21446 * 179.56030 * 25 24 23 27 27 C 1.38291 * 119.95727 * 359.97438 * 26 25 24 28 28 C 1.38101 * 119.98896 * 0.08030 * 27 26 25 29 29 C 1.38375 * 121.80166 * 342.57751 * 24 23 22 30 30 H 1.09003 * 109.47247 * 305.63969 * 1 2 3 31 31 H 1.08995 * 109.47272 * 65.63924 * 1 2 3 32 32 H 1.09000 * 109.47599 * 185.64300 * 1 2 3 33 33 H 1.08992 * 109.59118 * 353.42354 * 6 5 3 34 34 H 1.09004 * 109.58080 * 113.84817 * 6 5 3 35 35 H 1.08994 * 109.56649 * 185.55377 * 7 6 5 36 36 H 1.09002 * 109.35631 * 65.50284 * 7 6 5 37 37 H 1.08997 * 109.45991 * 301.21370 * 8 7 6 38 38 H 1.09008 * 109.45826 * 181.25800 * 8 7 6 39 39 H 0.96997 * 120.00202 * 94.85418 * 11 9 8 40 40 H 0.96994 * 119.99791 * 179.97438 * 15 14 12 41 41 H 1.09004 * 109.57844 * 246.14988 * 20 5 3 42 42 H 1.09005 * 109.58722 * 6.57313 * 20 5 3 43 43 H 1.08993 * 109.74051 * 168.52436 * 21 2 1 44 44 H 1.09003 * 109.71779 * 47.93424 * 21 2 1 45 45 H 1.09002 * 109.68254 * 175.57167 * 22 21 2 46 46 H 1.09004 * 109.67753 * 55.02623 * 22 21 2 47 47 H 1.07994 * 119.88832 * 359.51329 * 25 24 23 48 48 H 1.08001 * 120.01913 * 179.97438 * 26 25 24 49 49 H 1.08006 * 120.00235 * 180.02562 * 27 26 25 50 50 H 1.07993 * 119.84531 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0306 1.4213 0.0000 4 8 1.2461 2.3406 -0.1010 5 7 3.3503 1.6710 0.1122 6 6 4.3217 0.5689 0.1306 7 6 5.2032 0.7032 1.3710 8 6 5.8334 2.0976 1.3976 9 6 4.7308 3.1563 1.4696 10 1 4.1263 2.9921 2.3616 11 7 5.3352 4.4896 1.5272 12 6 5.7286 5.0116 2.7305 13 1 5.5937 4.4402 3.6370 14 6 6.3009 6.2751 2.7852 15 7 6.4658 6.9712 1.6803 16 14 6.8382 6.9869 4.4265 17 1 8.2492 6.6082 4.6922 18 1 6.7220 8.4668 4.3860 19 1 5.9703 6.4516 5.5060 20 6 3.8444 3.0501 0.2248 21 6 2.0404 -0.7194 -1.2514 22 6 1.7710 -2.2207 -1.0868 23 8 2.5522 -2.7012 0.0080 24 6 2.5030 -2.0083 1.1754 25 6 2.9472 -2.6323 2.3372 26 6 2.9214 -1.9582 3.5407 27 6 2.4534 -0.6580 3.5940 28 6 2.0106 -0.0360 2.4433 29 6 2.0317 -0.7086 1.2326 30 1 -0.3634 0.5988 0.8352 31 1 -0.3633 0.4239 -0.9361 32 1 -0.3634 -1.0227 0.1010 33 1 3.7930 -0.3838 0.1613 34 1 4.9439 0.6153 -0.7632 35 1 5.9896 -0.0510 1.3434 36 1 4.5943 0.5620 2.2640 37 1 6.4222 2.2473 0.4926 38 1 6.4804 2.1871 2.2704 39 1 5.4567 5.0026 0.7130 40 1 6.8653 7.8543 1.7185 41 1 4.4269 3.3030 -0.6612 42 1 3.0007 3.7341 0.3175 43 1 3.1110 -0.5484 -1.3635 44 1 1.5148 -0.3460 -2.1303 45 1 2.0542 -2.7466 -1.9986 46 1 0.7128 -2.3835 -0.8821 47 1 3.3126 -3.6477 2.2967 48 1 3.2666 -2.4457 4.4405 49 1 2.4332 -0.1295 4.5357 50 1 1.6452 0.9793 2.4877 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000712417.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:56 Heat of formation + Delta-G solvation = -26.467459 kcal Electronic energy + Delta-G solvation = -32474.480316 eV Core-core repulsion = 28467.223210 eV Total energy + Delta-G solvation = -4007.257106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.90707 -39.55896 -37.73008 -37.45589 -35.45429 -34.36547 -32.13365 -31.23320 -30.94603 -30.51043 -28.67944 -28.30068 -25.86616 -24.82734 -23.92469 -23.41515 -22.67243 -22.01294 -20.58658 -19.58643 -18.88685 -17.99597 -17.31462 -17.18179 -16.55250 -16.28111 -15.74560 -15.16803 -14.99949 -14.61797 -14.31325 -14.28845 -14.07276 -13.91597 -13.75608 -13.58037 -13.46294 -13.13002 -12.96403 -12.73344 -12.46230 -12.34065 -12.22161 -12.14257 -11.97828 -11.65065 -11.31155 -11.08830 -10.94381 -10.89087 -10.84896 -10.80633 -10.56733 -10.38602 -10.29408 -10.07439 -9.74363 -9.59427 -8.92817 -8.88083 -8.38516 -8.30830 -6.98795 -5.77822 -3.07352 1.11201 1.26540 2.63291 3.00395 3.09219 3.43090 3.48417 3.50050 3.57101 4.17777 4.26799 4.34943 4.48301 4.58671 4.70020 4.85052 4.93000 4.97490 5.04265 5.11713 5.19902 5.21718 5.27325 5.30951 5.35863 5.48306 5.53585 5.54233 5.58631 5.61769 5.70163 5.75565 5.78573 5.84984 5.85318 6.02250 6.11269 6.11904 6.16571 6.27053 6.29811 6.41259 6.43474 6.56760 6.58923 6.72487 6.89001 7.05558 7.19519 7.57026 7.69006 8.26359 8.40297 9.51334 10.06702 10.41848 11.44730 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.003417 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.578645 B = 8192.409213 C = 8849.269171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.034 4.034 3 C 0.527 3.473 4 O -0.537 6.537 5 N -0.595 5.595 6 C 0.095 3.905 7 C -0.132 4.132 8 C -0.135 4.135 9 C 0.171 3.829 10 H 0.049 0.951 11 N -0.721 5.721 12 C -0.238 4.238 13 H 0.070 0.930 14 C -0.012 4.012 15 N -0.932 5.932 16 Si 0.907 3.093 17 H -0.290 1.290 18 H -0.291 1.291 19 H -0.282 1.282 20 C 0.106 3.894 21 C -0.162 4.162 22 C 0.064 3.936 23 O -0.315 6.315 24 C 0.133 3.867 25 C -0.149 4.149 26 C -0.083 4.083 27 C -0.144 4.144 28 C -0.069 4.069 29 C -0.145 4.145 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.111 0.889 46 H 0.069 0.931 47 H 0.130 0.870 48 H 0.128 0.872 49 H 0.126 0.874 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.605 -23.501 -4.290 25.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.038 4.038 3 C 0.314 3.686 4 O -0.414 6.414 5 N -0.327 5.327 6 C -0.027 4.027 7 C -0.171 4.171 8 C -0.176 4.176 9 C 0.060 3.940 10 H 0.067 0.933 11 N -0.362 5.362 12 C -0.369 4.369 13 H 0.088 0.912 14 C -0.208 4.208 15 N -0.580 5.580 16 Si 0.738 3.262 17 H -0.217 1.217 18 H -0.217 1.217 19 H -0.207 1.207 20 C -0.017 4.017 21 C -0.200 4.200 22 C -0.011 4.011 23 O -0.229 6.229 24 C 0.088 3.912 25 C -0.168 4.168 26 C -0.101 4.101 27 C -0.163 4.163 28 C -0.087 4.087 29 C -0.147 4.147 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.129 0.871 46 H 0.087 0.913 47 H 0.148 0.852 48 H 0.146 0.854 49 H 0.144 0.856 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.883 -23.084 -4.221 25.463 hybrid contribution 0.497 0.874 0.570 1.156 sum -9.386 -22.211 -3.651 24.387 Atomic orbital electron populations 1.21733 0.90855 1.01714 1.03805 1.19670 0.97973 0.92659 0.93458 1.20114 0.82117 0.90024 0.76374 1.90704 1.54884 1.45953 1.49896 1.48007 1.05402 1.07949 1.71360 1.22058 0.91516 0.90249 0.98923 1.21842 0.98769 0.98733 0.97723 1.22267 0.99822 0.93356 1.02162 1.20442 0.91889 0.86804 0.94876 0.93313 1.42312 1.72505 1.13699 1.07697 1.19199 1.32830 0.98547 0.86336 0.91194 1.24739 1.01860 0.97177 0.96995 1.69663 1.49913 1.12716 1.25713 0.86195 0.78444 0.78306 0.83289 1.21717 1.21749 1.20747 1.22028 0.99212 0.81311 0.99157 1.22616 1.03952 0.95826 0.97581 1.23005 0.95619 0.93852 0.88645 1.86003 1.65638 1.52154 1.19084 1.18596 0.97174 0.89571 0.85891 1.20546 1.05354 1.00812 0.90083 1.20950 0.97674 0.94453 0.97023 1.21049 1.01283 0.95411 0.98517 1.20939 0.96930 0.99470 0.91372 1.19368 1.06394 0.93816 0.95079 0.91277 0.91306 0.92135 0.88938 0.91794 0.91635 0.91519 0.92642 0.91641 0.78219 0.93472 0.91721 0.89001 0.88930 0.88895 0.87058 0.91279 0.85228 0.85367 0.85630 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 7.46 37.16 0.28 -1.03 16 2 C -0.03 -0.39 0.39 -156.73 -0.06 -0.45 16 3 C 0.53 7.99 5.22 -10.99 -0.06 7.93 16 4 O -0.54 -10.03 15.40 5.56 0.09 -9.94 16 5 N -0.59 -8.98 2.94 -173.04 -0.51 -9.49 16 6 C 0.10 1.23 4.25 -3.93 -0.02 1.21 16 7 C -0.13 -1.84 6.06 -26.83 -0.16 -2.00 16 8 C -0.14 -2.38 5.47 -26.69 -0.15 -2.52 16 9 C 0.17 3.43 2.92 -67.82 -0.20 3.23 16 10 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 11 N -0.72 -18.05 5.12 -53.31 -0.27 -18.33 16 12 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 13 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 14 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 15 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 16 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.11 1.91 5.89 -3.72 -0.02 1.89 16 21 C -0.16 -1.46 4.54 -26.47 -0.12 -1.58 16 22 C 0.06 0.47 6.96 37.37 0.26 0.73 16 23 O -0.31 -3.10 10.26 -19.23 -0.20 -3.30 16 24 C 0.13 1.42 5.42 -39.19 -0.21 1.20 16 25 C -0.15 -1.46 9.94 -39.34 -0.39 -1.85 16 26 C -0.08 -0.78 10.04 -39.66 -0.40 -1.18 16 27 C -0.14 -1.55 9.74 -39.61 -0.39 -1.94 16 28 C -0.07 -0.84 7.99 -39.53 -0.32 -1.16 16 29 C -0.15 -1.66 2.67 -104.44 -0.28 -1.94 16 30 H 0.07 0.83 8.02 -51.93 -0.42 0.41 16 31 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.06 0.52 6.88 -51.93 -0.36 0.16 16 33 H 0.09 1.08 2.50 -51.93 -0.13 0.95 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.96 6.80 -51.93 -0.35 0.61 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 1.26 8.14 -51.92 -0.42 0.83 16 39 H 0.38 10.21 7.80 -40.82 -0.32 9.89 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.09 1.86 7.04 -51.93 -0.37 1.49 16 43 H 0.09 0.88 5.28 -51.93 -0.27 0.61 16 44 H 0.09 0.73 8.06 -51.93 -0.42 0.31 16 45 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.46 6.68 -51.93 -0.35 0.11 16 47 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 48 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 49 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 50 H 0.12 1.70 7.35 -52.49 -0.39 1.31 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -32.16 379.77 -9.50 -41.65 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -7.56 Total: 10.32 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.47 Total: -6.63 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.06 Total: -55.23 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.11 Total: -13.24 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.16 -9.50 -41.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000712417.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.187 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds