Wall clock time and date at job start Sat Apr 11 2020 07:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50691 * 109.40322 * 2 1 4 4 O 1.21281 * 120.00303 * 354.48103 * 3 2 1 5 5 N 1.34780 * 120.00168 * 174.48483 * 3 2 1 6 6 C 1.46924 * 120.62671 * 4.75885 * 5 3 2 7 7 C 1.52761 * 109.01085 * 233.58531 * 6 5 3 8 8 C 1.53040 * 109.38304 * 305.59510 * 7 6 5 9 9 C 1.53038 * 109.53934 * 61.23788 * 8 7 6 10 10 H 1.08999 * 109.49833 * 58.58575 * 9 8 7 11 11 N 1.46499 * 109.52273 * 178.66506 * 9 8 7 12 12 C 1.36940 * 120.00323 * 274.85219 * 11 9 8 13 13 H 1.08008 * 119.99484 * 0.02562 * 12 11 9 14 14 C 1.38811 * 120.00433 * 180.02562 * 12 11 9 15 15 N 1.31627 * 119.99707 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00179 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47125 * 89.99734 * 16 14 12 18 18 H 1.48499 * 109.46632 * 209.99841 * 16 14 12 19 19 H 1.48495 * 109.46741 * 329.99550 * 16 14 12 20 20 C 1.46926 * 120.63146 * 185.05200 * 5 3 2 21 21 C 1.53103 * 109.47202 * 240.10546 * 2 1 3 22 22 C 1.53408 * 108.27710 * 288.23403 * 21 2 1 23 23 O 1.42821 * 108.38829 * 295.29928 * 22 21 2 24 24 C 1.35838 * 117.86168 * 49.21749 * 23 22 21 25 25 C 1.39156 * 118.50339 * 162.86892 * 24 23 22 26 26 C 1.37963 * 120.21446 * 179.56030 * 25 24 23 27 27 C 1.38291 * 119.95727 * 359.97438 * 26 25 24 28 28 C 1.38101 * 119.98896 * 0.08030 * 27 26 25 29 29 C 1.38375 * 121.80166 * 342.57751 * 24 23 22 30 30 H 1.09003 * 109.47247 * 305.63969 * 1 2 3 31 31 H 1.08995 * 109.47272 * 65.63924 * 1 2 3 32 32 H 1.09000 * 109.47599 * 185.64300 * 1 2 3 33 33 H 1.08992 * 109.59118 * 353.42354 * 6 5 3 34 34 H 1.09004 * 109.58080 * 113.84817 * 6 5 3 35 35 H 1.08994 * 109.56649 * 185.55377 * 7 6 5 36 36 H 1.09002 * 109.35631 * 65.50284 * 7 6 5 37 37 H 1.08997 * 109.45991 * 301.21370 * 8 7 6 38 38 H 1.09008 * 109.45826 * 181.25800 * 8 7 6 39 39 H 0.96997 * 120.00202 * 94.85418 * 11 9 8 40 40 H 0.96994 * 119.99791 * 179.97438 * 15 14 12 41 41 H 1.09004 * 109.57844 * 246.14988 * 20 5 3 42 42 H 1.09005 * 109.58722 * 6.57313 * 20 5 3 43 43 H 1.08993 * 109.74051 * 168.52436 * 21 2 1 44 44 H 1.09003 * 109.71779 * 47.93424 * 21 2 1 45 45 H 1.09002 * 109.68254 * 175.57167 * 22 21 2 46 46 H 1.09004 * 109.67753 * 55.02623 * 22 21 2 47 47 H 1.07994 * 119.88832 * 359.51329 * 25 24 23 48 48 H 1.08001 * 120.01913 * 179.97438 * 26 25 24 49 49 H 1.08006 * 120.00235 * 180.02562 * 27 26 25 50 50 H 1.07993 * 119.84531 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0306 1.4213 0.0000 4 8 1.2461 2.3406 -0.1010 5 7 3.3503 1.6710 0.1122 6 6 4.3217 0.5689 0.1306 7 6 5.2032 0.7032 1.3710 8 6 5.8334 2.0976 1.3976 9 6 4.7308 3.1563 1.4696 10 1 4.1263 2.9921 2.3616 11 7 5.3352 4.4896 1.5272 12 6 5.7286 5.0116 2.7305 13 1 5.5937 4.4402 3.6370 14 6 6.3009 6.2751 2.7852 15 7 6.4658 6.9712 1.6803 16 14 6.8382 6.9869 4.4265 17 1 8.2492 6.6082 4.6922 18 1 6.7220 8.4668 4.3860 19 1 5.9703 6.4516 5.5060 20 6 3.8444 3.0501 0.2248 21 6 2.0404 -0.7194 -1.2514 22 6 1.7710 -2.2207 -1.0868 23 8 2.5522 -2.7012 0.0080 24 6 2.5030 -2.0083 1.1754 25 6 2.9472 -2.6323 2.3372 26 6 2.9214 -1.9582 3.5407 27 6 2.4534 -0.6580 3.5940 28 6 2.0106 -0.0360 2.4433 29 6 2.0317 -0.7086 1.2326 30 1 -0.3634 0.5988 0.8352 31 1 -0.3633 0.4239 -0.9361 32 1 -0.3634 -1.0227 0.1010 33 1 3.7930 -0.3838 0.1613 34 1 4.9439 0.6153 -0.7632 35 1 5.9896 -0.0510 1.3434 36 1 4.5943 0.5620 2.2640 37 1 6.4222 2.2473 0.4926 38 1 6.4804 2.1871 2.2704 39 1 5.4567 5.0026 0.7130 40 1 6.8653 7.8543 1.7185 41 1 4.4269 3.3030 -0.6612 42 1 3.0007 3.7341 0.3175 43 1 3.1110 -0.5484 -1.3635 44 1 1.5148 -0.3460 -2.1303 45 1 2.0542 -2.7466 -1.9986 46 1 0.7128 -2.3835 -0.8821 47 1 3.3126 -3.6477 2.2967 48 1 3.2666 -2.4457 4.4405 49 1 2.4332 -0.1295 4.5357 50 1 1.6452 0.9793 2.4877 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000712417.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:55 Heat of formation + Delta-G solvation = -46.067026 kcal Electronic energy + Delta-G solvation = -32475.330217 eV Core-core repulsion = 28467.223210 eV Total energy + Delta-G solvation = -4008.107007 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.83234 -40.65737 -38.91243 -38.43886 -36.52765 -36.01957 -33.78878 -32.83340 -31.68213 -31.30931 -30.24536 -29.30285 -27.06329 -26.16058 -25.27048 -24.45040 -23.60690 -23.42390 -21.79190 -20.80697 -19.97869 -19.23351 -18.81796 -18.28699 -17.41652 -17.24555 -16.90368 -16.67402 -16.04425 -15.90524 -15.67375 -15.42518 -15.24759 -15.10910 -14.85829 -14.82183 -14.68745 -14.54630 -14.16180 -13.83477 -13.66800 -13.45769 -13.12988 -13.01230 -12.95049 -12.87986 -12.83374 -12.51610 -12.32693 -12.22838 -12.15372 -12.05743 -11.90876 -11.83853 -11.70997 -11.59868 -11.41037 -10.94076 -10.78199 -9.78499 -9.70148 -9.10267 -9.06160 -7.97569 -5.27485 0.30109 0.45272 1.43054 1.45525 1.46914 1.55083 1.85672 2.34832 2.54211 2.75996 3.25910 3.35637 3.41157 3.55018 3.67536 3.74533 3.90045 3.96564 4.01807 4.04926 4.13553 4.21770 4.22461 4.28210 4.31599 4.44410 4.50014 4.51305 4.55074 4.58804 4.67621 4.75413 4.77963 4.78995 4.81485 4.87755 4.94904 5.01497 5.06229 5.09681 5.18496 5.31776 5.34545 5.38505 5.46359 5.49732 5.53906 5.62067 5.82741 6.23673 6.33855 6.46888 7.03295 7.29829 8.01451 8.26734 9.25765 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.003417 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.578645 B = 8192.409213 C = 8849.269171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.029 4.029 3 C 0.523 3.477 4 O -0.581 6.581 5 N -0.593 5.593 6 C 0.096 3.904 7 C -0.122 4.122 8 C -0.124 4.124 9 C 0.172 3.828 10 H 0.030 0.970 11 N -0.734 5.734 12 C -0.240 4.240 13 H 0.072 0.928 14 C -0.072 4.072 15 N -0.968 5.968 16 Si 0.972 3.028 17 H -0.284 1.284 18 H -0.295 1.295 19 H -0.272 1.272 20 C 0.118 3.882 21 C -0.161 4.161 22 C 0.064 3.936 23 O -0.317 6.317 24 C 0.133 3.867 25 C -0.148 4.148 26 C -0.076 4.076 27 C -0.154 4.154 28 C -0.087 4.087 29 C -0.153 4.153 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.373 0.627 40 H 0.252 0.748 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.144 0.856 46 H 0.080 0.920 47 H 0.152 0.848 48 H 0.156 0.844 49 H 0.128 0.872 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.162 -27.333 -4.355 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.032 4.032 3 C 0.312 3.688 4 O -0.461 6.461 5 N -0.325 5.325 6 C -0.026 4.026 7 C -0.160 4.160 8 C -0.164 4.164 9 C 0.063 3.937 10 H 0.048 0.952 11 N -0.374 5.374 12 C -0.372 4.372 13 H 0.090 0.910 14 C -0.264 4.264 15 N -0.618 5.618 16 Si 0.801 3.199 17 H -0.211 1.211 18 H -0.222 1.222 19 H -0.197 1.197 20 C -0.006 4.006 21 C -0.199 4.199 22 C -0.011 4.011 23 O -0.231 6.231 24 C 0.088 3.912 25 C -0.167 4.167 26 C -0.093 4.093 27 C -0.173 4.173 28 C -0.106 4.106 29 C -0.154 4.154 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.130 0.870 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.205 0.795 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.124 0.876 45 H 0.161 0.839 46 H 0.098 0.902 47 H 0.170 0.830 48 H 0.173 0.827 49 H 0.146 0.854 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.448 -26.993 -4.279 28.917 hybrid contribution 0.287 2.012 0.595 2.118 sum -9.161 -24.981 -3.684 26.861 Atomic orbital electron populations 1.21725 0.90430 1.02777 1.02875 1.19663 0.98303 0.89993 0.95217 1.20908 0.81513 0.91505 0.74893 1.90677 1.55883 1.47803 1.51762 1.48024 1.06145 1.07101 1.71183 1.22263 0.91161 0.90064 0.99069 1.21775 0.99390 0.96759 0.98115 1.22043 0.98387 0.94663 1.01318 1.20543 0.92592 0.85552 0.94991 0.95224 1.42474 1.72927 1.15497 1.06551 1.19526 1.31723 0.98647 0.87268 0.90978 1.25541 1.02768 0.97744 1.00351 1.69818 1.51385 1.12881 1.27763 0.85160 0.78204 0.77010 0.79522 1.21050 1.22180 1.19656 1.21613 0.97676 0.83038 0.98250 1.22665 1.03768 0.96999 0.96451 1.23264 0.96221 0.92503 0.89077 1.86015 1.66018 1.52009 1.19079 1.18677 0.96720 0.89044 0.86770 1.20871 1.04453 1.01692 0.89664 1.21239 0.96392 0.93529 0.98185 1.21180 1.01574 0.96384 0.98130 1.20804 0.98469 0.98505 0.92773 1.19289 1.07289 0.94451 0.94361 0.93603 0.91237 0.89616 0.86982 0.90109 0.88750 0.92028 0.92572 0.93409 0.79463 0.93944 0.91302 0.91959 0.89196 0.87638 0.83883 0.90162 0.83038 0.82684 0.85383 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 7.46 71.98 0.54 -1.95 16 2 C -0.03 -0.63 0.39 -53.62 -0.02 -0.65 16 3 C 0.52 16.22 5.22 87.65 0.46 16.68 16 4 O -0.58 -22.95 15.40 -3.03 -0.05 -23.00 16 5 N -0.59 -18.07 2.94 -819.76 -2.41 -20.48 16 6 C 0.10 2.29 4.25 86.22 0.37 2.66 16 7 C -0.12 -3.18 6.06 30.53 0.19 -2.99 16 8 C -0.12 -4.32 5.47 30.62 0.17 -4.16 16 9 C 0.17 7.18 2.92 45.07 0.13 7.32 16 10 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 11 N -0.73 -38.21 5.12 -322.58 -1.65 -39.86 16 12 C -0.24 -13.62 9.93 84.03 0.83 -12.78 16 13 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 14 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 15 N -0.97 -60.03 13.06 21.65 0.28 -59.75 16 16 Si 0.97 46.81 29.55 68.60 2.03 48.84 16 17 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 18 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 C 0.12 4.46 5.89 86.36 0.51 4.97 16 21 C -0.16 -2.45 4.54 30.77 0.14 -2.31 16 22 C 0.06 0.67 6.96 72.12 0.50 1.18 16 23 O -0.32 -4.92 10.26 -91.73 -0.94 -5.86 16 24 C 0.13 2.42 5.42 22.52 0.12 2.55 16 25 C -0.15 -2.36 9.94 22.43 0.22 -2.13 16 26 C -0.08 -1.20 10.04 22.22 0.22 -0.98 16 27 C -0.15 -3.19 9.74 22.25 0.22 -2.98 16 28 C -0.09 -2.15 7.99 22.30 0.18 -1.97 16 29 C -0.15 -3.28 2.67 -19.75 -0.05 -3.33 16 30 H 0.04 1.15 8.02 -2.39 -0.02 1.13 16 31 H 0.07 1.40 8.09 -2.39 -0.02 1.38 16 32 H 0.09 1.30 6.88 -2.39 -0.02 1.29 16 33 H 0.11 2.33 2.50 -2.39 -0.01 2.32 16 34 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.06 1.70 6.80 -2.39 -0.02 1.69 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.37 20.75 7.80 -92.71 -0.72 20.03 16 40 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.06 2.72 7.04 -2.38 -0.02 2.70 16 43 H 0.09 1.43 5.28 -2.39 -0.01 1.42 16 44 H 0.11 1.36 8.06 -2.39 -0.02 1.34 16 45 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.08 0.72 6.68 -2.38 -0.02 0.70 16 47 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 48 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 49 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 50 H 0.09 2.77 7.35 -2.91 -0.02 2.75 16 Total: -1.00 -72.60 379.77 2.68 -69.92 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: 0.23 Total: 34.78 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 5.19 Total: -4.59 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -3.78 Total: -120.09 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.99 Total: -28.86 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -72.60 2.68 -69.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000712417.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.852 kcal (2) G-P(sol) polarization free energy of solvation -72.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds