Wall clock time and date at job start Sat Apr 11 2020 07:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 110.83599 * 2 1 4 4 C 1.54704 * 110.94567 * 236.23323 * 2 1 3 5 5 O 1.43774 * 102.76678 * 216.62356 * 4 2 1 6 6 C 1.35851 * 109.32921 * 27.57594 * 5 4 2 7 7 C 1.38875 * 111.30588 * 341.22775 * 6 5 4 8 8 C 1.37660 * 120.86884 * 180.85032 * 7 6 5 9 9 C 1.38640 * 120.32405 * 359.40951 * 8 7 6 10 10 C 1.37786 * 119.97096 * 359.95904 * 9 8 7 11 11 C 1.39524 * 120.18724 * 0.17738 * 10 9 8 12 12 C 1.47542 * 120.05326 * 180.02562 * 11 10 9 13 13 O 1.21584 * 119.99873 * 126.20310 * 12 11 10 14 14 N 1.34776 * 119.99713 * 306.20244 * 12 11 10 15 15 C 1.46930 * 120.62880 * 174.18141 * 14 12 11 16 16 C 1.53193 * 108.77695 * 126.36315 * 15 14 12 17 17 C 1.53045 * 109.30671 * 54.63829 * 16 15 14 18 18 C 1.53036 * 109.53920 * 298.62932 * 17 16 15 19 19 H 1.08996 * 109.50173 * 301.38517 * 18 17 16 20 20 N 1.46504 * 109.49995 * 181.31872 * 18 17 16 21 21 C 1.36931 * 119.99931 * 155.00308 * 20 18 17 22 22 H 1.08001 * 120.00432 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99575 * 179.97438 * 21 20 18 24 24 N 1.31613 * 120.00274 * 359.73032 * 23 21 20 25 25 Si 1.86805 * 119.99892 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46889 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47242 * 120.00285 * 25 23 21 28 28 H 1.48498 * 109.47103 * 240.00499 * 25 23 21 29 29 C 1.46922 * 120.63216 * 354.15640 * 14 12 11 30 30 H 1.09000 * 109.47311 * 296.28332 * 1 2 3 31 31 H 1.09003 * 109.47113 * 56.27944 * 1 2 3 32 32 H 1.09003 * 109.47380 * 176.28049 * 1 2 3 33 33 H 1.08997 * 109.47256 * 183.72238 * 3 2 1 34 34 H 1.08997 * 109.46722 * 303.72093 * 3 2 1 35 35 H 1.09003 * 109.47148 * 63.71553 * 3 2 1 36 36 H 1.08997 * 110.75389 * 334.94469 * 4 2 1 37 37 H 1.09006 * 110.75207 * 98.12466 * 4 2 1 38 38 H 1.08006 * 119.83752 * 179.42998 * 8 7 6 39 39 H 1.07995 * 120.01666 * 179.97438 * 9 8 7 40 40 H 1.08008 * 119.90624 * 180.20360 * 10 9 8 41 41 H 1.09006 * 109.58455 * 6.57960 * 15 14 12 42 42 H 1.08995 * 109.58577 * 246.15583 * 15 14 12 43 43 H 1.08991 * 109.50047 * 294.68997 * 16 15 14 44 44 H 1.09002 * 109.52658 * 174.60155 * 16 15 14 45 45 H 1.09010 * 109.45868 * 178.61256 * 17 16 15 46 46 H 1.08998 * 109.45340 * 58.64966 * 17 16 15 47 47 H 0.97003 * 119.99360 * 335.00271 * 20 18 17 48 48 H 0.97006 * 120.00039 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.58474 * 113.84987 * 29 14 12 50 50 H 1.08999 * 109.58938 * 353.41938 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0742 1.4300 0.0000 4 6 2.0830 -0.8030 -1.2011 5 8 3.2476 -1.4397 -0.6484 6 6 3.0732 -1.6144 0.6875 7 6 2.0721 -0.7864 1.1782 8 6 1.7443 -0.7905 2.5152 9 6 2.4039 -1.6348 3.3951 10 6 3.3922 -2.4757 2.9318 11 6 3.7346 -2.4777 1.5792 12 6 4.7930 -3.3797 1.0863 13 8 4.5660 -4.1346 0.1606 14 7 6.0115 -3.3668 1.6621 15 6 7.0355 -4.3445 1.2693 16 6 8.3103 -3.5921 0.8749 17 6 8.7290 -2.6699 2.0224 18 6 7.6239 -1.6440 2.2839 19 1 7.4407 -1.0675 1.3772 20 7 8.0389 -0.7421 3.3613 21 6 7.5079 0.5174 3.4424 22 1 6.7828 0.8459 2.7125 23 6 7.9008 1.3717 4.4636 24 7 8.7796 0.9692 5.3568 25 14 7.1769 3.0902 4.5740 26 1 6.2138 3.2940 3.4621 27 1 6.4739 3.2488 5.8724 28 1 8.2670 4.0938 4.4754 29 6 6.3413 -2.3745 2.6942 30 1 -0.3634 0.4551 0.9214 31 1 -0.3633 0.5705 -0.8548 32 1 -0.3634 -1.0255 -0.0667 33 1 3.1618 1.4048 -0.0667 34 1 1.6702 1.9724 -0.8548 35 1 1.7781 1.9314 0.9214 36 1 1.3588 -1.5458 -1.5354 37 1 2.3556 -0.1360 -2.0190 38 1 0.9692 -0.1330 2.8805 39 1 2.1429 -1.6337 4.4430 40 1 3.9031 -3.1354 3.6176 41 1 6.6777 -4.9272 0.4204 42 1 7.2474 -5.0084 2.1074 43 1 8.1201 -2.9976 -0.0186 44 1 9.1078 -4.3071 0.6733 45 1 9.6497 -2.1515 1.7541 46 1 8.8949 -3.2624 2.9221 47 1 8.6899 -1.0373 4.0170 48 1 9.0539 1.5661 6.0706 49 1 6.4967 -2.8777 3.6485 50 1 5.5256 -1.6572 2.7855 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001098123.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:18:11 Heat of formation + Delta-G solvation = -49.463001 kcal Electronic energy + Delta-G solvation = -31667.020187 eV Core-core repulsion = 27658.765920 eV Total energy + Delta-G solvation = -4008.254267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.58931 -41.14777 -38.78517 -38.29663 -36.15989 -36.04072 -33.99277 -33.12743 -31.49812 -30.87059 -29.88826 -28.29505 -27.50012 -26.76799 -25.91855 -24.68587 -23.55637 -22.98251 -22.12401 -21.10540 -19.76725 -19.09801 -18.45914 -18.11436 -17.68576 -17.05617 -16.94056 -16.72373 -16.29713 -15.99639 -15.56229 -15.46494 -15.18699 -15.14640 -14.86732 -14.60979 -14.47434 -14.10562 -14.03518 -13.88675 -13.69344 -13.56252 -13.28325 -13.12845 -12.93432 -12.87345 -12.73924 -12.53960 -12.39720 -12.17032 -12.04899 -11.98602 -11.95368 -11.86964 -11.66763 -11.61033 -11.42644 -11.14504 -10.87928 -9.93214 -9.77574 -9.23472 -8.99766 -7.95343 -5.24614 -0.04674 0.27194 1.45990 1.47157 1.52712 1.56802 1.96650 2.22740 2.55017 2.63645 3.20824 3.33193 3.38385 3.52342 3.80683 3.85698 3.90560 3.93116 4.00638 4.09044 4.16045 4.24249 4.31830 4.33105 4.36036 4.38935 4.46459 4.53676 4.57573 4.67546 4.73086 4.74218 4.84571 4.89512 4.89860 4.92854 4.95940 5.01763 5.05942 5.15980 5.20891 5.29131 5.33287 5.35091 5.38715 5.41386 5.47496 5.56042 5.57825 6.07551 6.23966 6.30877 7.02432 7.34007 8.04146 8.31612 9.27469 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008251 B = 0.004871 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3392.756385 B = 5747.120755 C = 7966.272026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.047 4.047 3 C -0.134 4.134 4 C 0.047 3.953 5 O -0.325 6.325 6 C 0.125 3.875 7 C -0.173 4.173 8 C -0.047 4.047 9 C -0.147 4.147 10 C -0.059 4.059 11 C -0.174 4.174 12 C 0.562 3.438 13 O -0.578 6.578 14 N -0.598 5.598 15 C 0.107 3.893 16 C -0.118 4.118 17 C -0.117 4.117 18 C 0.166 3.834 19 H 0.025 0.975 20 N -0.726 5.726 21 C -0.239 4.239 22 H 0.065 0.935 23 C -0.062 4.062 24 N -0.963 5.963 25 Si 0.962 3.038 26 H -0.271 1.271 27 H -0.288 1.288 28 H -0.294 1.294 29 C 0.102 3.898 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.033 0.967 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.142 0.858 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.050 0.950 44 H 0.107 0.893 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.379 0.621 48 H 0.252 0.748 49 H 0.073 0.927 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.079 -5.303 -8.289 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.047 4.047 3 C -0.191 4.191 4 C -0.027 4.027 5 O -0.239 6.239 6 C 0.078 3.922 7 C -0.174 4.174 8 C -0.065 4.065 9 C -0.165 4.165 10 C -0.077 4.077 11 C -0.177 4.177 12 C 0.352 3.648 13 O -0.459 6.459 14 N -0.329 5.329 15 C -0.014 4.014 16 C -0.157 4.157 17 C -0.156 4.156 18 C 0.056 3.944 19 H 0.043 0.957 20 N -0.366 5.366 21 C -0.371 4.371 22 H 0.083 0.917 23 C -0.255 4.255 24 N -0.613 5.613 25 Si 0.792 3.208 26 H -0.196 1.196 27 H -0.215 1.215 28 H -0.221 1.221 29 C -0.023 4.023 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.142 0.858 38 H 0.177 0.823 39 H 0.181 0.819 40 H 0.159 0.841 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.211 0.789 48 H 0.061 0.939 49 H 0.091 0.909 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.084 -5.596 -8.978 19.252 hybrid contribution 0.354 0.919 0.431 1.075 sum -15.730 -4.677 -8.547 18.503 Atomic orbital electron populations 1.21749 0.89873 1.02828 1.04072 1.20882 0.98695 0.95374 0.89766 1.21808 0.99988 0.93445 1.03906 1.24368 0.85352 0.96088 0.96902 1.86789 1.41384 1.77175 1.18572 1.19654 0.94803 0.93644 0.84094 1.21034 1.00034 0.99595 0.96706 1.20822 0.98460 0.96933 0.90243 1.21342 0.96738 0.96901 1.01494 1.21188 0.96662 0.98316 0.91545 1.19194 1.02473 1.01408 0.94655 1.18512 0.82735 0.82215 0.81359 1.90692 1.82202 1.43165 1.29842 1.48218 1.11955 1.33031 1.39747 1.21803 0.87223 0.90771 1.01619 1.21818 0.97438 0.98942 0.97464 1.21736 0.97783 0.96803 0.99237 1.20601 0.93000 0.90444 0.90339 0.95663 1.42464 1.50556 1.11992 1.31587 1.19475 1.18331 0.90853 1.08399 0.91703 1.25398 1.00403 1.01854 0.97886 1.69793 1.36827 1.37106 1.17558 0.85245 0.77577 0.80566 0.77457 1.19566 1.21528 1.22127 1.22599 0.99681 0.90103 0.89900 0.90696 0.89815 0.92263 0.94727 0.89247 0.91211 0.89251 0.85758 0.82299 0.81940 0.84054 0.89779 0.89210 0.93065 0.87510 0.91969 0.90802 0.78866 0.93891 0.90892 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 8.56 71.98 0.62 -1.04 16 2 C -0.05 -0.93 1.03 -52.04 -0.05 -0.99 16 3 C -0.13 -2.58 8.61 71.98 0.62 -1.96 16 4 C 0.05 1.04 7.10 72.56 0.52 1.56 16 5 O -0.33 -11.10 11.04 -91.88 -1.01 -12.12 16 6 C 0.12 4.19 6.78 23.01 0.16 4.34 16 7 C -0.17 -4.50 5.04 -19.54 -0.10 -4.60 16 8 C -0.05 -1.04 9.92 22.23 0.22 -0.82 16 9 C -0.15 -3.45 10.05 22.26 0.22 -3.23 16 10 C -0.06 -1.68 7.74 22.47 0.17 -1.51 16 11 C -0.17 -6.02 4.63 -19.93 -0.09 -6.11 16 12 C 0.56 21.32 7.12 86.70 0.62 21.93 16 13 O -0.58 -24.91 16.49 -3.98 -0.07 -24.98 16 14 N -0.60 -20.32 2.97 -822.64 -2.44 -22.77 16 15 C 0.11 3.04 6.44 86.36 0.56 3.60 16 16 C -0.12 -3.17 6.08 30.67 0.19 -2.98 16 17 C -0.12 -3.76 5.35 30.62 0.16 -3.59 16 18 C 0.17 6.64 2.92 45.07 0.13 6.77 16 19 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 20 N -0.73 -35.45 5.12 -322.56 -1.65 -37.11 16 21 C -0.24 -12.99 9.93 84.03 0.83 -12.15 16 22 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 23 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 24 N -0.96 -56.82 13.06 21.65 0.28 -56.54 16 25 Si 0.96 45.10 29.55 68.60 2.03 47.12 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 28 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 29 C 0.10 3.70 5.14 86.37 0.44 4.14 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.80 8.07 -2.39 -0.02 0.78 16 33 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 1.72 7.86 -2.39 -0.02 1.70 16 37 H 0.12 2.18 7.93 -2.38 -0.02 2.16 16 38 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 39 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 40 H 0.14 3.69 7.74 -2.91 -0.02 3.67 16 41 H 0.08 2.49 7.00 -2.38 -0.02 2.48 16 42 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 46 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.38 19.50 7.80 -92.71 -0.72 18.78 16 48 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 49 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 50 H 0.07 2.85 5.38 -2.39 -0.01 2.84 16 Total: -1.00 -73.03 399.17 3.03 -70.00 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: 0.22 Total: 36.04 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 5.68 Total: 0.34 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -3.81 Total: -116.42 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -1.08 Total: -37.09 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -73.03 3.03 -70.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001098123.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.540 kcal (2) G-P(sol) polarization free energy of solvation -73.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds