Wall clock time and date at job start Sat Apr 11 2020 07:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 110.86317 * 2 1 4 4 C 1.54714 * 110.94401 * 236.26044 * 2 1 3 5 5 O 1.43779 * 102.76613 * 267.09288 * 4 2 1 6 6 C 1.35855 * 109.25674 * 332.22603 * 5 4 2 7 7 C 1.38877 * 111.31449 * 19.10094 * 6 5 4 8 8 C 1.37665 * 120.87135 * 179.29166 * 7 6 5 9 9 C 1.38648 * 120.31805 * 0.62397 * 8 7 6 10 10 C 1.37783 * 119.97388 * 359.43649 * 9 8 7 11 11 C 1.39518 * 120.18974 * 0.38598 * 10 9 8 12 12 C 1.47535 * 120.05704 * 179.70521 * 11 10 9 13 13 O 1.21588 * 120.00450 * 180.02562 * 12 11 10 14 14 N 1.34783 * 119.99739 * 0.02562 * 12 11 10 15 15 C 1.46504 * 120.00040 * 179.97438 * 14 12 11 16 16 H 1.09002 * 109.49782 * 325.00029 * 15 14 12 17 17 C 1.53034 * 109.49867 * 204.93668 * 15 14 12 18 18 C 1.53036 * 109.53815 * 178.68313 * 17 15 14 19 19 C 1.53191 * 109.31435 * 61.36868 * 18 17 15 20 20 N 1.46931 * 108.76932 * 305.36382 * 19 18 17 21 21 C 1.36936 * 120.62791 * 233.60715 * 20 19 18 22 22 H 1.08004 * 119.99998 * 27.68688 * 21 20 19 23 23 C 1.38811 * 120.00188 * 207.68451 * 21 20 19 24 24 N 1.31616 * 119.99719 * 17.35716 * 23 21 20 25 25 Si 1.86800 * 120.00338 * 197.35282 * 23 21 20 26 26 H 1.48504 * 109.46794 * 59.99844 * 25 23 21 27 27 H 1.48496 * 109.47174 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47076 * 300.00223 * 25 23 21 29 29 C 1.46932 * 118.76802 * 53.58878 * 20 19 18 30 30 H 1.08996 * 109.46833 * 296.25341 * 1 2 3 31 31 H 1.08999 * 109.47192 * 56.25130 * 1 2 3 32 32 H 1.09003 * 109.47172 * 176.25851 * 1 2 3 33 33 H 1.09004 * 109.47433 * 183.74425 * 3 2 1 34 34 H 1.09004 * 109.47630 * 303.74689 * 3 2 1 35 35 H 1.08997 * 109.47361 * 63.74829 * 3 2 1 36 36 H 1.08993 * 110.75722 * 148.76673 * 4 2 1 37 37 H 1.09008 * 110.90923 * 25.48163 * 4 2 1 38 38 H 1.07995 * 119.83632 * 180.34144 * 8 7 6 39 39 H 1.08003 * 120.00717 * 179.71923 * 9 8 7 40 40 H 1.08007 * 119.90257 * 180.09462 * 10 9 8 41 41 H 0.96994 * 119.99831 * 0.02562 * 14 12 11 42 42 H 1.08999 * 109.46463 * 298.70759 * 17 15 14 43 43 H 1.09001 * 109.46285 * 58.66150 * 17 15 14 44 44 H 1.09006 * 109.49780 * 181.31806 * 18 17 15 45 45 H 1.08993 * 109.49965 * 301.37856 * 18 17 15 46 46 H 1.09000 * 109.58794 * 65.14691 * 19 18 17 47 47 H 1.09000 * 109.58963 * 185.43869 * 19 18 17 48 48 H 0.97003 * 120.00092 * 179.97438 * 24 23 21 49 49 H 1.08997 * 109.61795 * 186.63927 * 29 20 19 50 50 H 1.09003 * 109.55836 * 66.20926 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0749 1.4296 0.0000 4 6 2.0830 -0.8025 -1.2016 5 8 2.2630 -2.1178 -0.6493 6 6 2.4928 -2.0156 0.6857 7 6 2.0722 -0.7869 1.1778 8 6 2.1992 -0.4800 2.5137 9 6 2.7639 -1.3931 3.3910 10 6 3.1904 -2.6189 2.9285 11 6 3.0631 -2.9419 1.5772 12 6 3.5267 -4.2528 1.0840 13 8 3.4158 -4.5331 -0.0939 14 7 4.0732 -5.1398 1.9392 15 6 4.5330 -6.4418 1.4496 16 1 3.8723 -6.7851 0.6535 17 6 4.5182 -7.4535 2.5976 18 6 4.9671 -8.8219 2.0798 19 6 6.3993 -8.7169 1.5464 20 7 6.4528 -7.6447 0.5432 21 6 6.9522 -7.8852 -0.7090 22 1 6.8954 -8.8775 -1.1316 23 6 7.5314 -6.8537 -1.4351 24 7 7.9128 -5.7521 -0.8240 25 14 7.7697 -7.0289 -3.2796 26 1 6.4510 -7.2306 -3.9320 27 1 8.4049 -5.7984 -3.8157 28 1 8.6431 -8.1975 -3.5570 29 6 5.9599 -6.3095 0.9082 30 1 -0.3633 0.4546 0.9216 31 1 -0.3633 0.5709 -0.8545 32 1 -0.3634 -1.0255 -0.0671 33 1 3.1625 1.4040 -0.0671 34 1 1.6708 1.9726 -0.8545 35 1 1.7795 1.9311 0.9216 36 1 3.0350 -0.3904 -1.5360 37 1 1.3636 -0.8225 -2.0203 38 1 1.8615 0.4784 2.8793 39 1 2.8652 -1.1453 4.4374 40 1 3.6287 -3.3300 3.6132 41 1 4.1613 -4.9163 2.8789 42 1 5.1974 -7.1217 3.3829 43 1 3.5083 -7.5311 3.0004 44 1 4.9339 -9.5473 2.8927 45 1 4.3024 -9.1434 1.2780 46 1 7.0785 -8.4841 2.3665 47 1 6.6892 -9.6628 1.0891 48 1 8.3179 -5.0314 -1.3314 49 1 5.9587 -5.6666 0.0280 50 1 6.6037 -5.8802 1.6760 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009758537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:18:45 Heat of formation + Delta-G solvation = -21.477988 kcal Electronic energy + Delta-G solvation = -30992.221034 eV Core-core repulsion = 26985.180288 eV Total energy + Delta-G solvation = -4007.040746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.56733 -39.33101 -37.53566 -36.96286 -35.22805 -34.02826 -32.63385 -30.95895 -29.96790 -29.88161 -28.48099 -27.68583 -26.65438 -25.20247 -24.19116 -22.53849 -22.13572 -21.75481 -20.63295 -19.59478 -18.99992 -17.32814 -17.11331 -16.70690 -16.43680 -16.05754 -15.36028 -15.13819 -14.82196 -14.43291 -14.18065 -13.98833 -13.85623 -13.70222 -13.55079 -13.35111 -13.10277 -12.99399 -12.80169 -12.51687 -12.29425 -12.26472 -12.12724 -11.85337 -11.77408 -11.70431 -11.22682 -11.06126 -10.95676 -10.77949 -10.67933 -10.64515 -10.41699 -10.20822 -9.92907 -9.87017 -9.45826 -9.26639 -9.03291 -8.43995 -8.35462 -8.21624 -6.59053 -5.68825 -3.11891 0.85370 1.21647 3.06730 3.26653 3.47046 3.53641 3.56608 3.58499 3.94640 4.00287 4.27123 4.58655 4.61024 4.65864 4.79448 4.87874 5.08052 5.17480 5.24237 5.26668 5.28764 5.36784 5.42301 5.46149 5.48538 5.51923 5.57041 5.60591 5.69191 5.73025 5.77055 5.85716 5.93563 6.08088 6.14103 6.20040 6.20159 6.25426 6.39981 6.45731 6.47344 6.57668 6.76248 6.83245 7.01041 7.04172 7.10549 7.38502 7.80546 7.89827 8.04202 8.54905 8.78341 9.29711 9.94033 10.48717 11.39105 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.003311 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.212217 B = 8455.466840 C = 9972.522712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.053 4.053 3 C -0.135 4.135 4 C 0.050 3.950 5 O -0.271 6.271 6 C 0.171 3.829 7 C -0.178 4.178 8 C -0.047 4.047 9 C -0.159 4.159 10 C -0.053 4.053 11 C -0.149 4.149 12 C 0.551 3.449 13 O -0.515 6.515 14 N -0.718 5.718 15 C 0.118 3.882 16 H 0.082 0.918 17 C -0.116 4.116 18 C -0.131 4.131 19 C 0.143 3.857 20 N -0.588 5.588 21 C -0.258 4.258 22 H 0.065 0.935 23 C 0.007 3.993 24 N -0.899 5.899 25 Si 0.902 3.098 26 H -0.282 1.282 27 H -0.291 1.291 28 H -0.283 1.283 29 C 0.168 3.832 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.389 0.611 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.018 0.982 47 H 0.055 0.945 48 H 0.254 0.746 49 H 0.095 0.905 50 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.564 13.712 9.974 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.053 4.053 3 C -0.192 4.192 4 C -0.025 4.025 5 O -0.183 6.183 6 C 0.123 3.877 7 C -0.179 4.179 8 C -0.065 4.065 9 C -0.178 4.178 10 C -0.072 4.072 11 C -0.153 4.153 12 C 0.337 3.663 13 O -0.391 6.391 14 N -0.370 5.370 15 C 0.013 3.987 16 H 0.100 0.900 17 C -0.154 4.154 18 C -0.171 4.171 19 C 0.016 3.984 20 N -0.311 5.311 21 C -0.387 4.387 22 H 0.083 0.917 23 C -0.192 4.192 24 N -0.542 5.542 25 Si 0.731 3.269 26 H -0.208 1.208 27 H -0.217 1.217 28 H -0.209 1.209 29 C 0.041 3.959 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.126 0.874 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.223 0.777 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.035 0.965 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.113 0.887 50 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -14.542 13.425 8.839 21.676 hybrid contribution 0.221 0.318 -0.360 0.529 sum -14.321 13.743 8.479 21.584 Atomic orbital electron populations 1.21785 0.92337 1.02661 1.02323 1.20814 0.96773 0.95986 0.91715 1.21767 1.01374 0.93616 1.02433 1.24109 1.01751 0.80575 0.96040 1.87049 1.84825 1.28620 1.17772 1.19471 0.90956 0.92963 0.84302 1.20686 1.05573 0.96207 0.95404 1.20374 0.96139 0.99082 0.90919 1.20908 1.02917 0.93989 0.99943 1.21087 0.96242 0.96825 0.93035 1.19452 1.06637 0.96092 0.93109 1.17986 0.78358 0.83682 0.86263 1.90866 1.54953 1.77438 1.15834 1.45973 1.62634 1.17354 1.11030 1.21958 1.00228 0.80383 0.96123 0.90007 1.21673 0.99980 0.96154 0.97573 1.22002 1.00129 0.95168 0.99775 1.20946 0.92463 0.92877 0.92086 1.43961 1.70842 1.06140 1.10183 1.19098 1.32369 0.96253 0.90978 0.91683 1.25014 0.97850 0.97651 0.98651 1.70006 1.42690 1.07226 1.34325 0.86382 0.77914 0.76783 0.85783 1.20848 1.21656 1.20932 1.21090 0.87004 0.88074 0.99767 0.91917 0.91764 0.91975 0.91928 0.91816 0.91864 0.90145 0.87444 0.85723 0.85001 0.84804 0.77691 0.92294 0.93111 0.92666 0.92121 0.96458 0.92659 0.93652 0.88718 0.96564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 8.61 37.16 0.32 -0.77 16 2 C -0.05 -0.51 1.03 -154.28 -0.16 -0.67 16 3 C -0.13 -1.00 8.56 37.15 0.32 -0.68 16 4 C 0.05 0.59 7.09 38.06 0.27 0.86 16 5 O -0.27 -4.65 10.13 -34.87 -0.35 -5.00 16 6 C 0.17 2.72 6.73 -38.44 -0.26 2.46 16 7 C -0.18 -2.13 5.05 -104.12 -0.53 -2.65 16 8 C -0.05 -0.46 9.91 -39.64 -0.39 -0.85 16 9 C -0.16 -1.55 10.05 -39.60 -0.40 -1.94 16 10 C -0.05 -0.63 9.51 -39.27 -0.37 -1.00 16 11 C -0.15 -2.40 5.89 -104.72 -0.62 -3.02 16 12 C 0.55 10.96 7.73 -12.47 -0.10 10.86 16 13 O -0.52 -12.80 15.53 -10.30 -0.16 -12.96 16 14 N -0.72 -12.71 5.03 -54.73 -0.28 -12.98 16 15 C 0.12 2.43 2.60 -67.81 -0.18 2.26 16 16 H 0.08 1.92 7.58 -51.93 -0.39 1.53 16 17 C -0.12 -1.93 5.35 -26.70 -0.14 -2.08 16 18 C -0.13 -2.29 6.08 -26.61 -0.16 -2.45 16 19 C 0.14 3.04 6.51 -3.71 -0.02 3.02 16 20 N -0.59 -15.44 3.00 -172.31 -0.52 -15.96 16 21 C -0.26 -7.45 9.59 -15.06 -0.14 -7.59 16 22 H 0.07 1.83 7.89 -52.48 -0.41 1.42 16 23 C 0.01 0.22 4.91 -17.43 -0.09 0.13 16 24 N -0.90 -27.61 11.19 55.49 0.62 -26.99 16 25 Si 0.90 23.19 29.59 -169.99 -5.03 18.16 16 26 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 28 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 29 C 0.17 4.26 4.88 -3.71 -0.02 4.24 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.51 8.07 -51.93 -0.42 0.09 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.89 7.86 -51.93 -0.41 0.49 16 37 H 0.11 1.01 7.93 -51.92 -0.41 0.60 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 40 H 0.13 1.25 6.37 -52.48 -0.33 0.92 16 41 H 0.39 5.34 6.61 -40.82 -0.27 5.07 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.05 1.15 7.94 -51.93 -0.41 0.74 16 48 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.09 2.85 6.04 -51.93 -0.31 2.54 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 396.14 15.07 5.97 5.97 Total: -1.00 -36.34 396.14 -10.42 -46.76 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -8.01 Total: 2.88 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -2.67 Total: 0.12 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.17 Total: -55.93 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.51 Total: -17.96 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.03 Total: 18.16 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.34 -10.42 -46.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009758537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.281 kcal (2) G-P(sol) polarization free energy of solvation -36.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds