Wall clock time and date at job start Sat Apr 11 2020 07:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 110.86317 * 2 1 4 4 C 1.54714 * 110.94401 * 236.26044 * 2 1 3 5 5 O 1.43779 * 102.76613 * 267.09288 * 4 2 1 6 6 C 1.35855 * 109.25674 * 332.22603 * 5 4 2 7 7 C 1.38877 * 111.31449 * 19.10094 * 6 5 4 8 8 C 1.37665 * 120.87135 * 179.29166 * 7 6 5 9 9 C 1.38648 * 120.31805 * 0.62397 * 8 7 6 10 10 C 1.37783 * 119.97388 * 359.43649 * 9 8 7 11 11 C 1.39518 * 120.18974 * 0.38598 * 10 9 8 12 12 C 1.47535 * 120.05704 * 179.70521 * 11 10 9 13 13 O 1.21588 * 120.00450 * 180.02562 * 12 11 10 14 14 N 1.34783 * 119.99739 * 0.02562 * 12 11 10 15 15 C 1.46504 * 120.00040 * 179.97438 * 14 12 11 16 16 H 1.09002 * 109.49782 * 325.00029 * 15 14 12 17 17 C 1.53034 * 109.49867 * 204.93668 * 15 14 12 18 18 C 1.53036 * 109.53815 * 178.68313 * 17 15 14 19 19 C 1.53191 * 109.31435 * 61.36868 * 18 17 15 20 20 N 1.46931 * 108.76932 * 305.36382 * 19 18 17 21 21 C 1.36936 * 120.62791 * 233.60715 * 20 19 18 22 22 H 1.08004 * 119.99998 * 27.68688 * 21 20 19 23 23 C 1.38811 * 120.00188 * 207.68451 * 21 20 19 24 24 N 1.31616 * 119.99719 * 17.35716 * 23 21 20 25 25 Si 1.86800 * 120.00338 * 197.35282 * 23 21 20 26 26 H 1.48504 * 109.46794 * 59.99844 * 25 23 21 27 27 H 1.48496 * 109.47174 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47076 * 300.00223 * 25 23 21 29 29 C 1.46932 * 118.76802 * 53.58878 * 20 19 18 30 30 H 1.08996 * 109.46833 * 296.25341 * 1 2 3 31 31 H 1.08999 * 109.47192 * 56.25130 * 1 2 3 32 32 H 1.09003 * 109.47172 * 176.25851 * 1 2 3 33 33 H 1.09004 * 109.47433 * 183.74425 * 3 2 1 34 34 H 1.09004 * 109.47630 * 303.74689 * 3 2 1 35 35 H 1.08997 * 109.47361 * 63.74829 * 3 2 1 36 36 H 1.08993 * 110.75722 * 148.76673 * 4 2 1 37 37 H 1.09008 * 110.90923 * 25.48163 * 4 2 1 38 38 H 1.07995 * 119.83632 * 180.34144 * 8 7 6 39 39 H 1.08003 * 120.00717 * 179.71923 * 9 8 7 40 40 H 1.08007 * 119.90257 * 180.09462 * 10 9 8 41 41 H 0.96994 * 119.99831 * 0.02562 * 14 12 11 42 42 H 1.08999 * 109.46463 * 298.70759 * 17 15 14 43 43 H 1.09001 * 109.46285 * 58.66150 * 17 15 14 44 44 H 1.09006 * 109.49780 * 181.31806 * 18 17 15 45 45 H 1.08993 * 109.49965 * 301.37856 * 18 17 15 46 46 H 1.09000 * 109.58794 * 65.14691 * 19 18 17 47 47 H 1.09000 * 109.58963 * 185.43869 * 19 18 17 48 48 H 0.97003 * 120.00092 * 179.97438 * 24 23 21 49 49 H 1.08997 * 109.61795 * 186.63927 * 29 20 19 50 50 H 1.09003 * 109.55836 * 66.20926 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0749 1.4296 0.0000 4 6 2.0830 -0.8025 -1.2016 5 8 2.2630 -2.1178 -0.6493 6 6 2.4928 -2.0156 0.6857 7 6 2.0722 -0.7869 1.1778 8 6 2.1992 -0.4800 2.5137 9 6 2.7639 -1.3931 3.3910 10 6 3.1904 -2.6189 2.9285 11 6 3.0631 -2.9419 1.5772 12 6 3.5267 -4.2528 1.0840 13 8 3.4158 -4.5331 -0.0939 14 7 4.0732 -5.1398 1.9392 15 6 4.5330 -6.4418 1.4496 16 1 3.8723 -6.7851 0.6535 17 6 4.5182 -7.4535 2.5976 18 6 4.9671 -8.8219 2.0798 19 6 6.3993 -8.7169 1.5464 20 7 6.4528 -7.6447 0.5432 21 6 6.9522 -7.8852 -0.7090 22 1 6.8954 -8.8775 -1.1316 23 6 7.5314 -6.8537 -1.4351 24 7 7.9128 -5.7521 -0.8240 25 14 7.7697 -7.0289 -3.2796 26 1 6.4510 -7.2306 -3.9320 27 1 8.4049 -5.7984 -3.8157 28 1 8.6431 -8.1975 -3.5570 29 6 5.9599 -6.3095 0.9082 30 1 -0.3633 0.4546 0.9216 31 1 -0.3633 0.5709 -0.8545 32 1 -0.3634 -1.0255 -0.0671 33 1 3.1625 1.4040 -0.0671 34 1 1.6708 1.9726 -0.8545 35 1 1.7795 1.9311 0.9216 36 1 3.0350 -0.3904 -1.5360 37 1 1.3636 -0.8225 -2.0203 38 1 1.8615 0.4784 2.8793 39 1 2.8652 -1.1453 4.4374 40 1 3.6287 -3.3300 3.6132 41 1 4.1613 -4.9163 2.8789 42 1 5.1974 -7.1217 3.3829 43 1 3.5083 -7.5311 3.0004 44 1 4.9339 -9.5473 2.8927 45 1 4.3024 -9.1434 1.2780 46 1 7.0785 -8.4841 2.3665 47 1 6.6892 -9.6628 1.0891 48 1 8.3179 -5.0314 -1.3314 49 1 5.9587 -5.6666 0.0280 50 1 6.6037 -5.8802 1.6760 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009758537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:18:43 Heat of formation + Delta-G solvation = -45.371694 kcal Electronic energy + Delta-G solvation = -30993.257143 eV Core-core repulsion = 26985.180288 eV Total energy + Delta-G solvation = -4008.076855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -42.54063 -40.85244 -39.00838 -38.22983 -36.09562 -35.83484 -34.47938 -32.23277 -31.76951 -30.85821 -30.03777 -28.28130 -27.48060 -27.27075 -25.37107 -23.97153 -23.72260 -22.97478 -21.93698 -21.19863 -20.29750 -18.77841 -18.32880 -18.25067 -17.59481 -17.08495 -17.02397 -16.55082 -16.12394 -15.89347 -15.72066 -15.37442 -15.28910 -14.83866 -14.77292 -14.57285 -14.46640 -14.16955 -14.06510 -13.85215 -13.65601 -13.50334 -13.21337 -12.95651 -12.90831 -12.71610 -12.69465 -12.52223 -12.40096 -12.28978 -12.10148 -11.96860 -11.87906 -11.71529 -11.62985 -11.60478 -11.29502 -10.83495 -10.58428 -10.19868 -9.90495 -9.21104 -8.72175 -7.92387 -5.37865 -0.16567 0.29772 1.35857 1.43239 1.47248 1.87141 2.15858 2.29136 2.46358 2.79893 3.20371 3.24097 3.45013 3.64471 3.78991 3.87206 3.91560 3.94361 4.10598 4.12172 4.23373 4.24684 4.34095 4.42179 4.44708 4.46938 4.52586 4.59763 4.74682 4.75954 4.80503 4.90039 4.91267 4.92637 5.01434 5.06795 5.15397 5.18797 5.20769 5.22739 5.30552 5.31972 5.37784 5.38715 5.44043 5.50991 5.58731 5.64990 5.75174 6.12726 6.33052 6.61970 7.08356 7.32236 7.82415 8.31211 9.12197 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.003311 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.212217 B = 8455.466840 C = 9972.522712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.045 4.045 3 C -0.130 4.130 4 C 0.036 3.964 5 O -0.320 6.320 6 C 0.131 3.869 7 C -0.178 4.178 8 C -0.036 4.036 9 C -0.145 4.145 10 C -0.052 4.052 11 C -0.186 4.186 12 C 0.543 3.457 13 O -0.583 6.583 14 N -0.703 5.703 15 C 0.132 3.868 16 H 0.044 0.956 17 C -0.105 4.105 18 C -0.122 4.122 19 C 0.135 3.865 20 N -0.610 5.610 21 C -0.267 4.267 22 H 0.069 0.931 23 C -0.051 4.051 24 N -0.930 5.930 25 Si 0.961 3.039 26 H -0.288 1.288 27 H -0.294 1.294 28 H -0.262 1.262 29 C 0.182 3.818 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.167 0.833 39 H 0.176 0.824 40 H 0.158 0.842 41 H 0.411 0.589 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.048 0.952 46 H 0.025 0.975 47 H 0.056 0.944 48 H 0.246 0.754 49 H 0.038 0.962 50 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.181 15.150 13.474 25.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.045 4.045 3 C -0.187 4.187 4 C -0.038 4.038 5 O -0.233 6.233 6 C 0.084 3.916 7 C -0.179 4.179 8 C -0.053 4.053 9 C -0.162 4.162 10 C -0.071 4.071 11 C -0.190 4.190 12 C 0.332 3.668 13 O -0.463 6.463 14 N -0.356 5.356 15 C 0.025 3.975 16 H 0.063 0.937 17 C -0.143 4.143 18 C -0.161 4.161 19 C 0.010 3.990 20 N -0.334 5.334 21 C -0.397 4.397 22 H 0.087 0.913 23 C -0.246 4.246 24 N -0.576 5.576 25 Si 0.788 3.212 26 H -0.214 1.214 27 H -0.220 1.220 28 H -0.187 1.187 29 C 0.054 3.946 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.140 0.860 38 H 0.184 0.816 39 H 0.194 0.806 40 H 0.175 0.825 41 H 0.250 0.750 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.119 0.881 45 H 0.067 0.933 46 H 0.043 0.957 47 H 0.075 0.925 48 H 0.055 0.945 49 H 0.056 0.944 50 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -16.163 14.843 12.415 25.213 hybrid contribution 0.712 -0.104 -1.396 1.570 sum -15.451 14.738 11.019 24.029 Atomic orbital electron populations 1.21775 0.90958 1.01756 1.04170 1.20853 0.97699 0.96587 0.89337 1.21768 1.00601 0.92027 1.04320 1.24418 1.02215 0.79484 0.97674 1.86975 1.85433 1.31619 1.19269 1.19951 0.92678 0.94914 0.84099 1.21066 1.04990 0.94761 0.97033 1.20939 0.94154 1.00569 0.89678 1.21440 1.00484 0.92366 1.01928 1.21398 0.95936 0.98556 0.91203 1.19457 1.09656 0.94495 0.95390 1.18778 0.77309 0.85125 0.85553 1.90814 1.57799 1.78982 1.18730 1.45752 1.61665 1.16191 1.11976 1.21513 0.95950 0.82808 0.97206 0.93741 1.21646 1.02648 0.94109 0.95938 1.21909 0.96690 0.96698 1.00804 1.21192 0.95440 0.91196 0.91123 1.44251 1.71140 1.07339 1.10686 1.19482 1.31275 0.96356 0.92590 0.91337 1.25792 0.98526 0.97658 1.02652 1.70166 1.44165 1.07851 1.35427 0.85439 0.77635 0.77166 0.80919 1.21448 1.21968 1.18729 1.20747 0.89731 0.87143 0.96945 0.90081 0.89830 0.94280 0.93101 0.90143 0.89767 0.90675 0.86049 0.81581 0.80620 0.82486 0.75046 0.90269 0.89553 0.88068 0.93296 0.95745 0.92543 0.94494 0.94379 0.98069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.61 71.98 0.62 -1.26 16 2 C -0.04 -0.82 1.03 -52.04 -0.05 -0.87 16 3 C -0.13 -1.60 8.56 71.98 0.62 -0.98 16 4 C 0.04 0.92 7.09 72.57 0.51 1.43 16 5 O -0.32 -12.10 10.13 -77.02 -0.78 -12.88 16 6 C 0.13 4.39 6.73 23.01 0.15 4.54 16 7 C -0.18 -4.06 5.05 -19.54 -0.10 -4.16 16 8 C -0.04 -0.56 9.91 22.23 0.22 -0.34 16 9 C -0.14 -2.20 10.05 22.26 0.22 -1.97 16 10 C -0.05 -1.15 9.51 22.47 0.21 -0.93 16 11 C -0.19 -6.24 5.89 -19.93 -0.12 -6.35 16 12 C 0.54 23.22 7.73 86.69 0.67 23.89 16 13 O -0.58 -32.05 15.53 10.91 0.17 -31.88 16 14 N -0.70 -25.63 5.03 -445.33 -2.24 -27.87 16 15 C 0.13 5.59 2.60 45.06 0.12 5.71 16 16 H 0.04 2.23 7.58 -2.39 -0.02 2.21 16 17 C -0.11 -3.29 5.35 30.62 0.16 -3.12 16 18 C -0.12 -3.97 6.08 30.67 0.19 -3.78 16 19 C 0.14 5.69 6.51 86.36 0.56 6.25 16 20 N -0.61 -33.14 3.00 -699.07 -2.09 -35.23 16 21 C -0.27 -16.03 9.59 84.03 0.81 -15.23 16 22 H 0.07 3.96 7.89 -2.91 -0.02 3.94 16 23 C -0.05 -3.13 4.91 84.86 0.42 -2.71 16 24 N -0.93 -60.53 11.19 21.65 0.24 -60.28 16 25 Si 0.96 49.83 29.59 68.60 2.03 51.86 16 26 H -0.29 -15.03 7.11 99.48 0.71 -14.33 16 27 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 28 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 29 C 0.18 9.74 4.88 86.36 0.42 10.16 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 0.75 8.07 -2.39 -0.02 0.73 16 34 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 1.85 7.86 -2.39 -0.02 1.83 16 37 H 0.12 2.49 7.93 -2.38 -0.02 2.47 16 38 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 39 H 0.18 1.21 8.06 -2.91 -0.02 1.18 16 40 H 0.16 2.50 6.37 -2.91 -0.02 2.48 16 41 H 0.41 10.90 6.61 -92.71 -0.61 10.28 16 42 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 45 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.06 2.32 7.94 -2.39 -0.02 2.30 16 48 H 0.25 15.67 8.31 -92.71 -0.77 14.90 16 49 H 0.04 2.47 6.04 -2.39 -0.01 2.46 16 50 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 Total: -1.00 -90.63 396.14 3.29 -87.34 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.33 Total: 18.68 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 5.64 Total: 10.27 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -4.09 Total: -123.39 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -0.61 Total: -44.77 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.03 Total: 51.86 kcal Total: -90.63 3.29 -87.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009758537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.967 kcal (2) G-P(sol) polarization free energy of solvation -90.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds