Wall clock time and date at job start Sat Apr 11 2020 07:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 110.86100 * 2 1 4 4 C 1.54713 * 110.94415 * 236.25676 * 2 1 3 5 5 O 1.44135 * 102.61096 * 216.25597 * 4 2 1 6 6 C 1.35858 * 109.11075 * 28.33680 * 5 4 2 7 7 C 1.38887 * 111.30008 * 340.30530 * 6 5 4 8 8 C 1.37652 * 120.86988 * 181.31518 * 7 6 5 9 9 C 1.38649 * 120.32114 * 359.11611 * 8 7 6 10 10 C 1.37788 * 119.97386 * 0.25254 * 9 8 7 11 11 C 1.39540 * 120.18571 * 0.18398 * 10 9 8 12 12 C 1.47527 * 120.05145 * 180.02562 * 11 10 9 13 13 O 1.21594 * 119.99822 * 180.02562 * 12 11 10 14 14 N 1.34778 * 120.00282 * 359.97438 * 12 11 10 15 15 C 1.46502 * 119.99810 * 180.02562 * 14 12 11 16 16 H 1.08998 * 109.50056 * 34.93448 * 15 14 12 17 17 C 1.53043 * 109.49598 * 155.00199 * 15 14 12 18 18 C 1.53038 * 109.53690 * 181.31091 * 17 15 14 19 19 C 1.53191 * 109.31499 * 298.63436 * 18 17 15 20 20 N 1.46923 * 108.77464 * 54.63752 * 19 18 17 21 21 C 1.36933 * 120.63340 * 126.41328 * 20 19 18 22 22 H 1.08003 * 120.00284 * 207.66505 * 21 20 19 23 23 C 1.38813 * 120.00242 * 27.66958 * 21 20 19 24 24 N 1.31627 * 119.99609 * 17.36389 * 23 21 20 25 25 Si 1.86797 * 120.00473 * 197.36950 * 23 21 20 26 26 H 1.48505 * 109.46850 * 359.97438 * 25 23 21 27 27 H 1.48490 * 109.47445 * 119.99450 * 25 23 21 28 28 H 1.48498 * 109.47012 * 240.00001 * 25 23 21 29 29 C 1.46934 * 118.73725 * 306.38924 * 20 19 18 30 30 H 1.09000 * 109.47490 * 296.26554 * 1 2 3 31 31 H 1.08997 * 109.47220 * 56.26409 * 1 2 3 32 32 H 1.09006 * 109.46816 * 176.26356 * 1 2 3 33 33 H 1.09002 * 109.46991 * 183.73901 * 3 2 1 34 34 H 1.09008 * 109.46790 * 303.73491 * 3 2 1 35 35 H 1.08993 * 109.47530 * 63.73731 * 3 2 1 36 36 H 1.08997 * 110.75181 * 334.96811 * 4 2 1 37 37 H 1.09001 * 110.75240 * 98.33331 * 4 2 1 38 38 H 1.07998 * 119.84400 * 179.39390 * 8 7 6 39 39 H 1.07992 * 120.01426 * 180.27942 * 9 8 7 40 40 H 1.07992 * 119.90671 * 180.15792 * 10 9 8 41 41 H 0.97000 * 119.99906 * 0.02562 * 14 12 11 42 42 H 1.08997 * 109.45722 * 301.33423 * 17 15 14 43 43 H 1.09000 * 109.45858 * 61.30348 * 17 15 14 44 44 H 1.09002 * 109.49690 * 58.58553 * 18 17 15 45 45 H 1.09002 * 109.49896 * 178.68163 * 18 17 15 46 46 H 1.09003 * 109.58644 * 174.42303 * 19 18 17 47 47 H 1.08994 * 109.58598 * 294.84808 * 19 18 17 48 48 H 0.97005 * 119.99847 * 180.02562 * 24 23 21 49 49 H 1.09000 * 109.58508 * 293.82282 * 29 20 19 50 50 H 1.08998 * 109.58747 * 173.40076 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0748 1.4297 0.0000 4 6 2.0830 -0.8026 -1.2015 5 8 3.2548 -1.4324 -0.6467 6 6 3.0715 -1.6166 0.6868 7 6 2.0721 -0.7867 1.1781 8 6 1.7427 -0.7926 2.5146 9 6 2.3947 -1.6450 3.3925 10 6 3.3813 -2.4877 2.9287 11 6 3.7295 -2.4835 1.5774 12 6 4.7858 -3.3875 1.0839 13 8 5.0888 -3.3827 -0.0936 14 7 5.4157 -4.2178 1.9385 15 6 6.4651 -5.1151 1.4484 16 1 7.0233 -4.6217 0.6527 17 6 7.4143 -5.4660 2.5965 18 6 8.5294 -6.3770 2.0782 19 6 7.9161 -7.6751 1.5440 20 7 6.8967 -7.3387 0.5408 21 6 6.9412 -7.8908 -0.7115 22 1 6.5196 -7.3589 -1.5515 23 6 7.5283 -9.1343 -0.9013 24 7 7.7313 -9.9301 0.1272 25 14 8.0304 -9.6781 -2.6164 26 1 7.6964 -8.6096 -3.5921 27 1 9.4924 -9.9364 -2.6457 28 1 7.3008 -10.9208 -2.9750 29 6 5.8283 -6.3989 0.9071 30 1 -0.3634 0.4548 0.9215 31 1 -0.3633 0.5707 -0.8546 32 1 -0.3633 -1.0255 -0.0670 33 1 3.1624 1.4040 -0.0670 34 1 1.6708 1.9724 -0.8547 35 1 1.7793 1.9312 0.9215 36 1 1.3585 -1.5449 -1.5364 37 1 2.3590 -0.1350 -2.0177 38 1 0.9695 -0.1333 2.8805 39 1 2.1292 -1.6488 4.4392 40 1 3.8866 -3.1530 3.6129 41 1 5.1742 -4.2214 2.8779 42 1 7.8500 -4.5519 2.9997 43 1 6.8601 -5.9810 3.3812 44 1 9.0683 -5.8723 1.2763 45 1 9.2181 -6.6076 2.8911 46 1 8.6940 -8.2847 1.0842 47 1 7.4544 -8.2255 2.3637 48 1 8.1418 -10.7989 -0.0054 49 1 5.1963 -6.8453 1.6749 50 1 5.2286 -6.1664 0.0271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009758540.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:18:49 Heat of formation + Delta-G solvation = -44.766036 kcal Electronic energy + Delta-G solvation = -30548.974517 eV Core-core repulsion = 26540.923925 eV Total energy + Delta-G solvation = -4008.050592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.51723 -40.88787 -39.03180 -38.22120 -36.09226 -35.95371 -34.20877 -32.36943 -31.99096 -30.83351 -29.91078 -28.27200 -27.46332 -27.29189 -25.36281 -23.91262 -23.78172 -22.99851 -21.96564 -21.23615 -20.30520 -18.75889 -18.30156 -18.23656 -17.58577 -17.08217 -16.97208 -16.49948 -16.26183 -15.95830 -15.72853 -15.37486 -15.24979 -14.85790 -14.81543 -14.57093 -14.46098 -14.22917 -14.07708 -13.83596 -13.64283 -13.43422 -13.20287 -13.06327 -12.89850 -12.79153 -12.70919 -12.56780 -12.38917 -12.14095 -11.99868 -11.96086 -11.87650 -11.77391 -11.60639 -11.59531 -11.33698 -10.86690 -10.64802 -10.21719 -9.91219 -9.20616 -8.72431 -7.93724 -5.39056 -0.16819 0.30556 1.40878 1.42125 1.54517 1.85400 2.09847 2.29754 2.48218 2.79256 3.19819 3.22072 3.46160 3.62909 3.74839 3.86822 3.89432 3.92029 4.09007 4.11626 4.22078 4.25499 4.34662 4.41504 4.45083 4.47085 4.54244 4.55672 4.74672 4.76587 4.78391 4.90121 4.92371 4.93770 4.98782 5.02577 5.10473 5.11557 5.19531 5.23297 5.25127 5.32156 5.38651 5.40292 5.44489 5.53812 5.60288 5.64601 5.74306 6.12491 6.33841 6.58508 7.09838 7.27682 7.78999 8.29033 9.12022 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.002593 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.448269 B =10794.831953 C =11900.814764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.046 4.046 3 C -0.131 4.131 4 C 0.038 3.962 5 O -0.318 6.318 6 C 0.133 3.867 7 C -0.177 4.177 8 C -0.036 4.036 9 C -0.146 4.146 10 C -0.052 4.052 11 C -0.185 4.185 12 C 0.547 3.453 13 O -0.581 6.581 14 N -0.703 5.703 15 C 0.143 3.857 16 H 0.052 0.948 17 C -0.103 4.103 18 C -0.130 4.130 19 C 0.171 3.829 20 N -0.607 5.607 21 C -0.269 4.269 22 H 0.048 0.952 23 C -0.043 4.043 24 N -0.927 5.927 25 Si 0.966 3.034 26 H -0.277 1.277 27 H -0.281 1.281 28 H -0.286 1.286 29 C 0.147 3.853 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.164 0.836 39 H 0.174 0.826 40 H 0.159 0.841 41 H 0.414 0.586 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.045 0.955 45 H 0.088 0.912 46 H 0.056 0.944 47 H 0.008 0.992 48 H 0.253 0.747 49 H 0.023 0.977 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.330 24.660 11.284 31.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.046 4.046 3 C -0.188 4.188 4 C -0.037 4.037 5 O -0.231 6.231 6 C 0.085 3.915 7 C -0.178 4.178 8 C -0.054 4.054 9 C -0.163 4.163 10 C -0.070 4.070 11 C -0.189 4.189 12 C 0.336 3.664 13 O -0.462 6.462 14 N -0.356 5.356 15 C 0.036 3.964 16 H 0.070 0.930 17 C -0.141 4.141 18 C -0.169 4.169 19 C 0.046 3.954 20 N -0.331 5.331 21 C -0.399 4.399 22 H 0.066 0.934 23 C -0.239 4.239 24 N -0.573 5.573 25 Si 0.793 3.207 26 H -0.202 1.202 27 H -0.207 1.207 28 H -0.212 1.212 29 C 0.020 3.980 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.138 0.862 38 H 0.181 0.819 39 H 0.191 0.809 40 H 0.176 0.824 41 H 0.252 0.748 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.063 0.937 45 H 0.107 0.893 46 H 0.074 0.926 47 H 0.026 0.974 48 H 0.063 0.937 49 H 0.041 0.959 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -14.855 24.439 10.284 30.392 hybrid contribution 0.384 -0.984 -1.165 1.573 sum -14.471 23.455 9.118 29.029 Atomic orbital electron populations 1.21765 0.90210 1.02566 1.04192 1.20861 0.98397 0.95788 0.89585 1.21782 1.00120 0.92827 1.04056 1.24475 0.85503 0.96202 0.97475 1.87056 1.39897 1.76942 1.19223 1.19925 0.94400 0.92924 0.84232 1.21051 1.00187 0.99678 0.96912 1.20928 0.97857 0.96814 0.89798 1.21429 0.96498 0.96559 1.01834 1.21412 0.96378 0.97922 0.91309 1.19398 1.02915 1.01288 0.95270 1.18733 0.81835 0.80323 0.85524 1.90817 1.66375 1.70290 1.18681 1.45764 1.38553 1.39017 1.12257 1.21258 0.88472 0.89372 0.97296 0.93015 1.21614 0.96045 1.00331 0.96088 1.22025 0.97742 0.96829 1.00335 1.20748 0.91151 0.93669 0.89852 1.44238 1.26902 1.50505 1.11490 1.19394 1.36198 0.98762 0.85585 0.93412 1.25713 1.02262 0.95037 1.00861 1.70173 1.47358 1.08965 1.30807 0.85242 0.77849 0.77578 0.79995 1.20200 1.20682 1.21211 1.21184 0.90401 0.89819 0.96599 0.90021 0.90241 0.92836 0.94252 0.89910 0.90302 0.90102 0.86167 0.81880 0.80869 0.82362 0.74784 0.89398 0.90124 0.93655 0.89325 0.92594 0.97359 0.93734 0.95869 0.95947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 8.56 71.98 0.62 -0.63 16 2 C -0.05 -0.71 1.02 -52.03 -0.05 -0.76 16 3 C -0.13 -1.62 8.61 71.98 0.62 -1.00 16 4 C 0.04 0.80 7.11 72.57 0.52 1.31 16 5 O -0.32 -10.57 10.15 -77.07 -0.78 -11.35 16 6 C 0.13 3.87 6.72 23.01 0.15 4.03 16 7 C -0.18 -3.46 5.04 -19.53 -0.10 -3.56 16 8 C -0.04 -0.47 9.91 22.23 0.22 -0.25 16 9 C -0.15 -1.79 10.05 22.26 0.22 -1.56 16 10 C -0.05 -0.93 9.51 22.48 0.21 -0.72 16 11 C -0.18 -5.32 5.89 -19.93 -0.12 -5.43 16 12 C 0.55 20.24 7.73 86.69 0.67 20.91 16 13 O -0.58 -28.21 15.53 10.88 0.17 -28.04 16 14 N -0.70 -22.04 5.03 -445.33 -2.24 -24.28 16 15 C 0.14 5.51 2.61 45.07 0.12 5.63 16 16 H 0.05 2.39 7.58 -2.39 -0.02 2.37 16 17 C -0.10 -3.21 5.35 30.62 0.16 -3.04 16 18 C -0.13 -4.84 6.08 30.67 0.19 -4.66 16 19 C 0.17 8.44 5.31 86.36 0.46 8.90 16 20 N -0.61 -33.31 2.99 -699.09 -2.09 -35.41 16 21 C -0.27 -16.40 9.59 84.03 0.81 -15.59 16 22 H 0.05 3.01 7.89 -2.91 -0.02 2.99 16 23 C -0.04 -2.54 4.91 84.86 0.42 -2.12 16 24 N -0.93 -56.37 11.19 21.65 0.24 -56.13 16 25 Si 0.97 47.81 29.59 68.60 2.03 49.84 16 26 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 27 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 28 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 29 C 0.15 7.04 6.09 86.36 0.53 7.56 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.62 8.07 -2.38 -0.02 0.60 16 33 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 1.61 7.86 -2.39 -0.02 1.59 16 37 H 0.12 2.05 7.92 -2.39 -0.02 2.03 16 38 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 39 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 40 H 0.16 1.91 6.37 -2.91 -0.02 1.89 16 41 H 0.41 9.06 6.61 -92.71 -0.61 8.44 16 42 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 46 H 0.06 3.12 6.04 -2.39 -0.01 3.11 16 47 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 49 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.02 1.19 7.93 -2.39 -0.02 1.17 16 Total: -1.00 -85.25 396.15 3.29 -81.96 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.33 Total: 14.40 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 5.64 Total: 9.01 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -4.09 Total: -115.82 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -0.61 Total: -39.39 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -85.25 3.29 -81.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009758540.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.189 kcal (2) G-P(sol) polarization free energy of solvation -85.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds