Wall clock time and date at job start Sat Apr 11 2020 07:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 110.86459 * 2 1 4 4 C 1.55009 * 111.48129 * 236.47005 * 2 1 3 5 5 O 1.43788 * 102.60178 * 267.26637 * 4 2 1 6 6 C 1.35857 * 109.23038 * 331.71973 * 5 4 2 7 7 C 1.38875 * 111.29822 * 19.58185 * 6 5 4 8 8 C 1.37658 * 120.86738 * 179.29231 * 7 6 5 9 9 C 1.38649 * 120.32116 * 0.10391 * 8 7 6 10 10 C 1.37782 * 119.97585 * 0.02562 * 9 8 7 11 11 C 1.39528 * 120.18517 * 359.81970 * 10 9 8 12 12 C 1.47542 * 120.05421 * 179.97438 * 11 10 9 13 13 O 1.21583 * 119.99814 * 180.02562 * 12 11 10 14 14 N 1.34772 * 119.99724 * 0.02562 * 12 11 10 15 15 C 1.46504 * 119.99676 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.46991 * 184.66328 * 15 14 12 17 17 H 1.08997 * 110.00037 * 54.40463 * 16 15 14 18 18 C 1.54328 * 109.88253 * 293.30821 * 16 15 14 19 19 C 1.55271 * 103.00829 * 218.46742 * 18 16 15 20 20 C 1.54911 * 101.52965 * 35.36431 * 19 18 16 21 21 N 1.47023 * 109.88399 * 175.50576 * 16 15 14 22 22 C 1.36945 * 125.64364 * 298.33764 * 21 16 15 23 23 H 1.07999 * 119.99844 * 346.28822 * 22 21 16 24 24 C 1.38813 * 119.99936 * 166.29408 * 22 21 16 25 25 N 1.31621 * 119.99796 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00121 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47134 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47333 * 119.99770 * 26 24 22 29 29 H 1.48501 * 109.47286 * 240.00278 * 26 24 22 30 30 H 1.08995 * 109.47023 * 296.26390 * 1 2 3 31 31 H 1.09000 * 109.47004 * 56.26394 * 1 2 3 32 32 H 1.08998 * 109.47190 * 176.26138 * 1 2 3 33 33 H 1.08995 * 109.47288 * 183.73571 * 3 2 1 34 34 H 1.08998 * 109.47075 * 303.74074 * 3 2 1 35 35 H 1.09005 * 109.46450 * 63.73433 * 3 2 1 36 36 H 1.09000 * 111.17183 * 148.84677 * 4 2 1 37 37 H 1.09008 * 110.64642 * 25.44594 * 4 2 1 38 38 H 1.08006 * 119.83794 * 180.08808 * 8 7 6 39 39 H 1.07999 * 120.00747 * 179.97438 * 9 8 7 40 40 H 1.08003 * 119.90341 * 179.80649 * 10 9 8 41 41 H 0.97005 * 120.00401 * 0.02562 * 14 12 11 42 42 H 1.09000 * 109.47103 * 64.66430 * 15 14 12 43 43 H 1.08998 * 109.47218 * 304.66198 * 15 14 12 44 44 H 1.08998 * 110.71926 * 336.75461 * 18 16 15 45 45 H 1.09000 * 110.71633 * 100.02768 * 18 16 15 46 46 H 1.09002 * 110.96391 * 277.33660 * 19 18 16 47 47 H 1.09005 * 111.09857 * 153.45022 * 19 18 16 48 48 H 1.08998 * 110.36709 * 204.23305 * 20 19 18 49 49 H 1.09001 * 110.36536 * 82.01625 * 20 19 18 50 50 H 0.97000 * 119.99954 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0750 1.4297 0.0000 4 6 2.0977 -0.7968 -1.2024 5 8 2.2748 -2.1129 -0.6511 6 6 2.5021 -2.0117 0.6845 7 6 2.0721 -0.7868 1.1780 8 6 2.1950 -0.4814 2.5146 9 6 2.7550 -1.3963 3.3931 10 6 3.1921 -2.6177 2.9289 11 6 3.0694 -2.9391 1.5766 12 6 3.5389 -4.2476 1.0826 13 8 3.4320 -4.5264 -0.0960 14 7 4.0862 -5.1339 1.9378 15 6 4.5519 -6.4335 1.4473 16 6 5.0183 -7.2870 2.6283 17 1 4.2254 -7.3585 3.3727 18 6 6.2787 -6.6616 3.2624 19 6 7.1407 -7.9017 3.6227 20 6 6.8146 -8.8574 2.4480 21 7 5.3867 -8.6308 2.1594 22 6 4.5431 -9.5243 1.5550 23 1 3.4755 -9.3635 1.5839 24 6 5.0600 -10.6367 0.9053 25 7 6.3611 -10.8325 0.8697 26 14 3.9093 -11.8558 0.0815 27 1 2.5042 -11.4112 0.2639 28 1 4.2214 -11.9292 -1.3685 29 1 4.0872 -13.1966 0.6947 30 1 -0.3633 0.4547 0.9215 31 1 -0.3633 0.5707 -0.8546 32 1 -0.3633 -1.0255 -0.0670 33 1 3.1625 1.4040 -0.0670 34 1 1.6710 1.9725 -0.8546 35 1 1.7793 1.9311 0.9216 36 1 3.0512 -0.3848 -1.5327 37 1 1.3813 -0.8153 -2.0238 38 1 1.8538 0.4757 2.8807 39 1 2.8494 -1.1512 4.4406 40 1 3.6310 -3.3283 3.6136 41 1 4.1712 -4.9116 2.8782 42 1 5.3816 -6.2849 0.7562 43 1 3.7363 -6.9408 0.9321 44 1 6.7985 -6.0285 2.5434 45 1 6.0201 -6.0974 4.1584 46 1 6.8275 -8.3312 4.5743 47 1 8.2014 -7.6509 3.6394 48 1 6.9821 -9.8930 2.7438 49 1 7.4216 -8.6093 1.5773 50 1 6.7224 -11.6096 0.4154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028354273.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:07 Heat of formation + Delta-G solvation = -19.066585 kcal Electronic energy + Delta-G solvation = -30254.888732 eV Core-core repulsion = 26247.952552 eV Total energy + Delta-G solvation = -4006.936180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.69104 -39.35962 -37.69700 -37.27546 -35.35365 -34.18310 -32.46358 -31.09608 -30.05318 -29.53227 -28.46435 -27.78676 -26.77445 -25.08379 -24.36004 -23.42656 -22.27345 -21.09679 -20.24429 -19.74468 -19.21110 -17.48274 -17.38259 -16.65089 -16.57799 -16.16665 -15.61628 -15.30728 -14.88420 -14.66526 -14.49120 -14.26344 -13.99033 -13.81370 -13.66858 -13.36052 -13.22275 -13.14050 -12.82755 -12.49605 -12.33853 -12.05991 -11.93405 -11.85542 -11.81831 -11.71655 -11.33228 -11.30883 -11.18014 -10.91602 -10.90529 -10.78160 -10.18397 -10.06347 -9.88563 -9.82381 -9.69769 -9.50050 -9.17381 -8.64233 -8.53177 -8.34104 -6.81936 -5.74051 -3.10414 0.71827 1.09049 2.92515 3.11104 3.40945 3.46760 3.49451 3.51517 3.77544 3.88323 4.14825 4.47396 4.51311 4.54571 4.68947 4.76802 4.96388 5.04989 5.12253 5.16407 5.17630 5.24411 5.35636 5.38079 5.40982 5.42590 5.46399 5.53046 5.62507 5.65639 5.74363 5.83153 5.83990 5.95199 6.04456 6.10006 6.14095 6.18548 6.25936 6.33070 6.48419 6.57961 6.64968 6.76217 6.85551 6.96188 7.10125 7.54494 7.63125 7.82090 7.86670 8.28124 8.58542 9.20268 9.80672 10.47437 11.37811 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016582 B = 0.002482 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.180172 B =11278.177902 C =12367.774643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.053 4.053 3 C -0.135 4.135 4 C 0.051 3.949 5 O -0.273 6.273 6 C 0.170 3.830 7 C -0.177 4.177 8 C -0.046 4.046 9 C -0.158 4.158 10 C -0.053 4.053 11 C -0.152 4.152 12 C 0.549 3.451 13 O -0.526 6.526 14 N -0.720 5.720 15 C 0.110 3.890 16 C 0.152 3.848 17 H 0.038 0.962 18 C -0.128 4.128 19 C -0.148 4.148 20 C 0.171 3.829 21 N -0.589 5.589 22 C -0.231 4.231 23 H 0.077 0.923 24 C -0.003 4.003 25 N -0.916 5.916 26 Si 0.911 3.089 27 H -0.278 1.278 28 H -0.289 1.289 29 H -0.290 1.290 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.393 0.607 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.074 0.926 49 H 0.025 0.975 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.282 26.387 5.240 27.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.053 4.053 3 C -0.192 4.192 4 C -0.025 4.025 5 O -0.184 6.184 6 C 0.122 3.878 7 C -0.178 4.178 8 C -0.064 4.064 9 C -0.176 4.176 10 C -0.072 4.072 11 C -0.156 4.156 12 C 0.335 3.665 13 O -0.403 6.403 14 N -0.372 5.372 15 C -0.014 4.014 16 C 0.043 3.957 17 H 0.056 0.944 18 C -0.166 4.166 19 C -0.187 4.187 20 C 0.046 3.954 21 N -0.313 5.313 22 C -0.360 4.360 23 H 0.094 0.906 24 C -0.200 4.200 25 N -0.563 5.563 26 Si 0.741 3.259 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.217 1.217 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.126 0.874 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.227 0.773 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.043 0.957 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.333 25.710 4.080 27.045 hybrid contribution -0.519 -0.383 -0.070 0.649 sum -7.852 25.327 4.009 26.818 Atomic orbital electron populations 1.21774 0.92174 1.02764 1.02417 1.20876 0.96846 0.95961 0.91610 1.21778 1.01231 0.93682 1.02534 1.24173 1.01593 0.80536 0.96164 1.87046 1.84963 1.28657 1.17753 1.19470 0.91088 0.93000 0.84286 1.20693 1.05357 0.96335 0.95418 1.20404 0.95979 0.99125 0.90900 1.20936 1.02696 0.93980 0.99987 1.21115 0.96265 0.96817 0.92983 1.19430 1.07080 0.95920 0.93129 1.18072 0.78452 0.83740 0.86262 1.90835 1.55379 1.77895 1.16162 1.46045 1.62346 1.17557 1.11301 1.22235 0.99670 0.80736 0.98804 1.21135 0.94887 0.86606 0.93058 0.94448 1.22648 0.96976 0.97615 0.99315 1.23024 0.98067 0.97057 1.00547 1.21471 0.84214 0.97643 0.92022 1.44498 1.07624 1.09306 1.69895 1.19046 0.88878 1.01220 1.26822 0.90556 1.24900 0.95974 0.99501 0.99590 1.69949 1.09890 1.29393 1.47034 0.86066 0.79891 0.80777 0.79187 1.20348 1.21602 1.21739 0.91815 0.91721 0.91912 0.92021 0.91778 0.91833 0.90137 0.87442 0.85634 0.84874 0.84684 0.77315 0.91972 0.91056 0.91780 0.92411 0.92308 0.92323 0.90777 0.95687 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 8.66 37.16 0.32 -0.64 16 2 C -0.05 -0.43 1.03 -154.12 -0.16 -0.59 16 3 C -0.14 -0.79 8.54 37.16 0.32 -0.47 16 4 C 0.05 0.50 7.10 38.22 0.27 0.77 16 5 O -0.27 -4.13 10.13 -34.87 -0.35 -4.49 16 6 C 0.17 2.39 6.72 -38.44 -0.26 2.13 16 7 C -0.18 -1.85 5.04 -104.12 -0.53 -2.38 16 8 C -0.05 -0.39 9.91 -39.64 -0.39 -0.78 16 9 C -0.16 -1.33 10.05 -39.60 -0.40 -1.72 16 10 C -0.05 -0.55 9.51 -39.27 -0.37 -0.93 16 11 C -0.15 -2.17 5.89 -104.72 -0.62 -2.79 16 12 C 0.55 9.83 7.76 -12.47 -0.10 9.74 16 13 O -0.53 -11.83 15.86 -10.29 -0.16 -11.99 16 14 N -0.72 -11.70 5.35 -61.35 -0.33 -12.03 16 15 C 0.11 2.23 5.09 -4.04 -0.02 2.21 16 16 C 0.15 3.04 3.22 -66.95 -0.22 2.83 16 17 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 18 C -0.13 -2.13 6.07 -24.83 -0.15 -2.28 16 19 C -0.15 -2.72 7.10 -24.52 -0.17 -2.89 16 20 C 0.17 4.12 5.42 -2.53 -0.01 4.10 16 21 N -0.59 -14.82 3.13 -162.57 -0.51 -15.33 16 22 C -0.23 -6.45 9.73 -15.06 -0.15 -6.59 16 23 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 24 C 0.00 -0.08 5.47 -17.43 -0.10 -0.17 16 25 N -0.92 -26.99 10.54 55.49 0.58 -26.41 16 26 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.39 8.05 -51.93 -0.42 -0.03 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 37 H 0.11 0.84 7.94 -51.92 -0.41 0.42 16 38 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.14 1.09 6.37 -52.48 -0.33 0.76 16 41 H 0.39 4.96 6.26 -40.82 -0.26 4.71 16 42 H 0.06 1.38 8.03 -51.93 -0.42 0.96 16 43 H 0.07 1.66 7.86 -51.93 -0.41 1.25 16 44 H 0.06 1.06 7.78 -51.93 -0.40 0.66 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 48 H 0.07 1.98 6.86 -51.93 -0.36 1.62 16 49 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 50 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 398.85 15.07 6.01 6.01 Total: -1.00 -34.88 398.85 -10.54 -45.41 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.03 Total: 1.76 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -2.73 Total: -0.46 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.25 Total: -53.76 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.52 Total: -16.48 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.88 -10.54 -45.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028354273.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.348 kcal (2) G-P(sol) polarization free energy of solvation -34.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds