Wall clock time and date at job start Sat Apr 11 2020 07:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 110.85865 * 2 1 4 4 C 1.54706 * 110.94378 * 236.26187 * 2 1 3 5 5 O 1.43780 * 102.76597 * 216.61758 * 4 2 1 6 6 C 1.35853 * 109.32643 * 27.57480 * 5 4 2 7 7 C 1.38877 * 111.30838 * 341.22902 * 6 5 4 8 8 C 1.37658 * 120.87308 * 180.85247 * 7 6 5 9 9 C 1.38643 * 120.32023 * 359.45346 * 8 7 6 10 10 C 1.37789 * 119.97320 * 359.91502 * 9 8 7 11 11 C 1.39525 * 120.18593 * 0.22614 * 10 9 8 12 12 C 1.47537 * 120.05359 * 179.97438 * 11 10 9 13 13 O 1.21589 * 120.00010 * 180.02562 * 12 11 10 14 14 N 1.34780 * 120.00111 * 359.97438 * 12 11 10 15 15 C 1.46498 * 120.00246 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47108 * 180.02562 * 15 14 12 17 17 H 1.09002 * 110.77651 * 303.20678 * 16 15 14 18 18 C 1.55160 * 110.71864 * 179.97438 * 16 15 14 19 19 C 1.54910 * 101.58122 * 206.13184 * 18 16 15 20 20 N 1.47425 * 104.83231 * 37.00939 * 19 18 16 21 21 C 1.36933 * 125.64542 * 156.13438 * 20 19 18 22 22 H 1.08005 * 119.99541 * 179.69129 * 21 20 19 23 23 C 1.38813 * 120.00564 * 359.69503 * 21 20 19 24 24 N 1.31616 * 119.99514 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00305 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47209 * 89.99775 * 25 23 21 27 27 H 1.48501 * 109.47422 * 209.99954 * 25 23 21 28 28 H 1.48504 * 109.47192 * 329.99911 * 25 23 21 29 29 C 1.47026 * 108.70074 * 335.87083 * 20 19 18 30 30 H 1.09004 * 109.47285 * 296.25201 * 1 2 3 31 31 H 1.08994 * 109.47539 * 56.26007 * 1 2 3 32 32 H 1.09008 * 109.46961 * 176.25976 * 1 2 3 33 33 H 1.09006 * 109.47343 * 183.74163 * 3 2 1 34 34 H 1.08997 * 109.47479 * 303.74336 * 3 2 1 35 35 H 1.09002 * 109.47308 * 63.74745 * 3 2 1 36 36 H 1.08994 * 110.75272 * 334.93920 * 4 2 1 37 37 H 1.09004 * 110.75428 * 98.12201 * 4 2 1 38 38 H 1.07995 * 119.84330 * 179.42856 * 8 7 6 39 39 H 1.07998 * 120.01856 * 179.89114 * 9 8 7 40 40 H 1.08001 * 119.90539 * 180.20320 * 10 9 8 41 41 H 0.96999 * 119.99460 * 0.02562 * 14 12 11 42 42 H 1.09003 * 109.47365 * 59.99474 * 15 14 12 43 43 H 1.09000 * 109.46701 * 299.99851 * 15 14 12 44 44 H 1.08991 * 111.00600 * 324.20802 * 18 16 15 45 45 H 1.09004 * 111.00084 * 88.02248 * 18 16 15 46 46 H 1.09001 * 110.36852 * 278.17238 * 19 18 16 47 47 H 1.08998 * 110.36449 * 155.84885 * 19 18 16 48 48 H 0.97002 * 119.99999 * 179.97438 * 24 23 21 49 49 H 1.09004 * 109.87531 * 120.47707 * 29 20 19 50 50 H 1.08996 * 109.88343 * 241.48426 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0748 1.4298 0.0000 4 6 2.0830 -0.8025 -1.2015 5 8 3.2477 -1.4394 -0.6492 6 6 3.0734 -1.6146 0.6867 7 6 2.0722 -0.7868 1.1779 8 6 1.7444 -0.7915 2.5148 9 6 2.4048 -1.6355 3.3945 10 6 3.3932 -2.4761 2.9308 11 6 3.7356 -2.4775 1.5782 12 6 4.7948 -3.3783 1.0851 13 8 5.0927 -3.3784 -0.0938 14 7 5.4330 -4.2005 1.9414 15 6 6.4851 -5.0946 1.4518 16 6 7.0414 -5.9141 2.6180 17 1 7.4112 -5.2605 3.4081 18 6 8.1595 -6.8732 2.1308 19 6 8.0851 -8.0011 3.1900 20 7 6.6483 -8.1459 3.4868 21 6 6.0456 -9.2701 3.9847 22 1 4.9822 -9.2741 4.1735 23 6 6.8013 -10.4046 4.2468 24 7 8.0971 -10.3999 4.0162 25 14 5.9792 -11.9380 4.9267 26 1 5.5309 -12.7990 3.8028 27 1 6.9468 -12.6866 5.7684 28 1 4.8062 -11.5473 5.7493 29 6 5.9708 -6.8811 3.1656 30 1 -0.3634 0.4546 0.9217 31 1 -0.3634 0.5707 -0.8545 32 1 -0.3633 -1.0256 -0.0670 33 1 3.1625 1.4042 -0.0671 34 1 1.6708 1.9726 -0.8545 35 1 1.7794 1.9312 0.9217 36 1 1.3587 -1.5451 -1.5361 37 1 2.3555 -0.1351 -2.0191 38 1 0.9694 -0.1343 2.8804 39 1 2.1449 -1.6339 4.4427 40 1 3.9047 -3.1355 3.6164 41 1 5.1956 -4.2001 2.8819 42 1 7.2862 -4.5040 1.0074 43 1 6.0701 -5.7671 0.7011 44 1 7.9384 -7.2572 1.1350 45 1 9.1321 -6.3814 2.1506 46 1 8.6311 -7.7142 4.0887 47 1 8.4840 -8.9304 2.7832 48 1 8.6253 -11.1925 4.1997 49 1 5.2047 -7.0528 2.4094 50 1 5.5171 -6.4648 4.0649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029024101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:26 Heat of formation + Delta-G solvation = -18.710561 kcal Electronic energy + Delta-G solvation = -29864.268551 eV Core-core repulsion = 25857.347809 eV Total energy + Delta-G solvation = -4006.920741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.78244 -39.56688 -37.74288 -37.36204 -35.44069 -34.58295 -32.55544 -31.10212 -30.12565 -29.62589 -28.13866 -27.83732 -26.85496 -25.64857 -24.37538 -23.33220 -22.34029 -21.24990 -20.29072 -19.77895 -19.29181 -17.54332 -17.43578 -16.81577 -16.67692 -16.27868 -15.77042 -15.36943 -15.22407 -14.73963 -14.59518 -14.44277 -14.04514 -13.80429 -13.75939 -13.53880 -13.28409 -13.16643 -12.74068 -12.59589 -12.47589 -12.34442 -12.00670 -11.87234 -11.74410 -11.66292 -11.45651 -11.39913 -11.24847 -10.98008 -10.94414 -10.79049 -10.40189 -10.12544 -9.99665 -9.86529 -9.69140 -9.47665 -9.26417 -8.86174 -8.64140 -8.43362 -6.82203 -5.64397 -3.06083 0.62801 1.02436 2.79645 3.00908 3.25470 3.40609 3.45341 3.47325 3.64130 3.82195 4.08645 4.40517 4.47022 4.49799 4.62606 4.68644 4.89077 4.98028 5.05262 5.07158 5.11038 5.16911 5.19815 5.30213 5.32180 5.35667 5.41003 5.43171 5.54138 5.57937 5.68475 5.72706 5.77776 5.88644 5.92170 5.99310 6.08686 6.12132 6.17376 6.25972 6.36985 6.51231 6.57140 6.61750 6.75399 6.87622 6.93369 7.52789 7.62445 7.63846 7.87043 8.34537 8.37805 9.23177 9.84174 10.49194 11.39525 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020129 B = 0.002096 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.693012 B =13357.118424 C =13966.977891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 C -0.135 4.135 4 C 0.051 3.949 5 O -0.274 6.274 6 C 0.171 3.829 7 C -0.178 4.178 8 C -0.043 4.043 9 C -0.156 4.156 10 C -0.051 4.051 11 C -0.155 4.155 12 C 0.554 3.446 13 O -0.529 6.529 14 N -0.722 5.722 15 C 0.134 3.866 16 C -0.115 4.115 17 H 0.076 0.924 18 C -0.135 4.135 19 C 0.152 3.848 20 N -0.604 5.604 21 C -0.222 4.222 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.922 5.922 25 Si 0.915 3.085 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.282 1.282 29 C 0.141 3.859 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.399 0.601 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.012 0.988 47 H 0.107 0.893 48 H 0.252 0.748 49 H 0.025 0.975 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.611 25.176 -5.306 29.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.053 4.053 3 C -0.192 4.192 4 C -0.024 4.024 5 O -0.185 6.185 6 C 0.123 3.877 7 C -0.179 4.179 8 C -0.061 4.061 9 C -0.175 4.175 10 C -0.070 4.070 11 C -0.159 4.159 12 C 0.341 3.659 13 O -0.406 6.406 14 N -0.374 5.374 15 C 0.011 3.989 16 C -0.134 4.134 17 H 0.094 0.906 18 C -0.174 4.174 19 C 0.027 3.973 20 N -0.330 5.330 21 C -0.350 4.350 22 H 0.094 0.906 23 C -0.208 4.208 24 N -0.571 5.571 25 Si 0.745 3.255 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.015 3.985 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.145 0.855 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.234 0.766 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.030 0.970 47 H 0.125 0.875 48 H 0.063 0.937 49 H 0.042 0.958 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -13.136 24.876 -6.259 28.820 hybrid contribution -0.672 -0.701 0.999 1.393 sum -13.808 24.175 -5.260 28.333 Atomic orbital electron populations 1.21770 0.92265 1.02601 1.02595 1.20828 0.97029 0.95884 0.91585 1.21794 1.01544 0.93357 1.02480 1.24104 0.86496 0.95685 0.96120 1.87007 1.38211 1.75617 1.17705 1.19440 0.92636 0.91407 0.84232 1.20691 1.01238 1.00480 0.95449 1.20432 0.97837 0.96997 0.90863 1.20967 0.98057 0.98291 1.00146 1.21147 0.95792 0.97089 0.92958 1.19320 1.02672 1.00731 0.93212 1.18049 0.81540 0.80264 0.86028 1.90818 1.65377 1.68334 1.16109 1.45981 1.38990 1.40684 1.11785 1.21450 0.89153 0.91529 0.96777 1.22445 0.97929 0.96493 0.96535 0.90571 1.23007 0.96031 0.97515 1.00879 1.21940 0.85175 0.97023 0.93186 1.44509 1.04018 1.08666 1.75856 1.19074 0.92460 0.88796 1.34717 0.90553 1.24793 0.95741 0.98271 1.01969 1.69797 1.04554 1.28352 1.54397 0.86069 0.78026 0.82966 0.78409 1.21586 1.21661 1.20773 1.21327 0.93630 0.87210 0.96351 0.91763 0.91751 0.91965 0.91973 0.91689 0.91816 0.90165 0.87377 0.85529 0.84721 0.84565 0.76606 0.91592 0.91190 0.91812 0.92103 0.97019 0.87513 0.93736 0.95760 0.96470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.56 37.16 0.32 -0.41 16 2 C -0.05 -0.39 1.03 -154.28 -0.16 -0.55 16 3 C -0.13 -0.84 8.61 37.16 0.32 -0.52 16 4 C 0.05 0.45 7.10 38.06 0.27 0.72 16 5 O -0.27 -3.77 10.12 -34.86 -0.35 -4.12 16 6 C 0.17 2.22 6.73 -38.44 -0.26 1.96 16 7 C -0.18 -1.73 5.04 -104.12 -0.52 -2.25 16 8 C -0.04 -0.35 9.92 -39.64 -0.39 -0.74 16 9 C -0.16 -1.28 10.05 -39.60 -0.40 -1.68 16 10 C -0.05 -0.51 9.51 -39.27 -0.37 -0.88 16 11 C -0.16 -2.05 5.89 -104.72 -0.62 -2.67 16 12 C 0.55 8.78 7.76 -12.47 -0.10 8.68 16 13 O -0.53 -10.36 15.87 -10.29 -0.16 -10.53 16 14 N -0.72 -10.21 5.35 -61.35 -0.33 -10.54 16 15 C 0.13 2.10 4.99 -4.04 -0.02 2.08 16 16 C -0.11 -1.95 3.02 -88.79 -0.27 -2.21 16 17 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 18 C -0.14 -2.55 6.53 -24.58 -0.16 -2.71 16 19 C 0.15 3.68 5.89 -2.53 -0.01 3.67 16 20 N -0.60 -15.55 3.39 -170.07 -0.58 -16.12 16 21 C -0.22 -6.23 10.27 -15.06 -0.15 -6.39 16 22 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 23 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 24 N -0.92 -27.02 10.09 55.49 0.56 -26.46 16 25 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 C 0.14 2.89 6.52 -3.07 -0.02 2.87 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.37 8.07 -51.92 -0.42 -0.05 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.63 7.86 -51.93 -0.41 0.22 16 37 H 0.11 0.72 7.92 -51.93 -0.41 0.30 16 38 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.14 1.10 6.37 -52.49 -0.33 0.77 16 41 H 0.40 4.70 6.34 -40.82 -0.26 4.45 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 44 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.11 2.93 5.87 -51.93 -0.30 2.62 16 48 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.02 0.51 7.77 -51.93 -0.40 0.11 16 50 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 398.59 15.07 6.01 6.01 Total: -1.00 -34.69 398.59 -10.52 -45.21 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.00 Total: 0.89 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.65 Total: -1.50 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.35 Total: -53.13 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.52 Total: -14.65 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.69 -10.52 -45.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029024101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.500 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds