Wall clock time and date at job start Sat Apr 11 2020 07:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 110.85865 * 2 1 4 4 C 1.54706 * 110.94378 * 236.26187 * 2 1 3 5 5 O 1.43780 * 102.76597 * 216.61758 * 4 2 1 6 6 C 1.35853 * 109.32643 * 27.57480 * 5 4 2 7 7 C 1.38877 * 111.30838 * 341.22902 * 6 5 4 8 8 C 1.37658 * 120.87308 * 180.85247 * 7 6 5 9 9 C 1.38643 * 120.32023 * 359.45346 * 8 7 6 10 10 C 1.37789 * 119.97320 * 359.91502 * 9 8 7 11 11 C 1.39525 * 120.18593 * 0.22614 * 10 9 8 12 12 C 1.47537 * 120.05359 * 179.97438 * 11 10 9 13 13 O 1.21589 * 120.00010 * 180.02562 * 12 11 10 14 14 N 1.34780 * 120.00111 * 359.97438 * 12 11 10 15 15 C 1.46498 * 120.00246 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47108 * 180.02562 * 15 14 12 17 17 H 1.09002 * 110.77651 * 303.20678 * 16 15 14 18 18 C 1.55160 * 110.71864 * 179.97438 * 16 15 14 19 19 C 1.54910 * 101.58122 * 206.13184 * 18 16 15 20 20 N 1.47425 * 104.83231 * 37.00939 * 19 18 16 21 21 C 1.36933 * 125.64542 * 156.13438 * 20 19 18 22 22 H 1.08005 * 119.99541 * 179.69129 * 21 20 19 23 23 C 1.38813 * 120.00564 * 359.69503 * 21 20 19 24 24 N 1.31616 * 119.99514 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00305 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47209 * 89.99775 * 25 23 21 27 27 H 1.48501 * 109.47422 * 209.99954 * 25 23 21 28 28 H 1.48504 * 109.47192 * 329.99911 * 25 23 21 29 29 C 1.47026 * 108.70074 * 335.87083 * 20 19 18 30 30 H 1.09004 * 109.47285 * 296.25201 * 1 2 3 31 31 H 1.08994 * 109.47539 * 56.26007 * 1 2 3 32 32 H 1.09008 * 109.46961 * 176.25976 * 1 2 3 33 33 H 1.09006 * 109.47343 * 183.74163 * 3 2 1 34 34 H 1.08997 * 109.47479 * 303.74336 * 3 2 1 35 35 H 1.09002 * 109.47308 * 63.74745 * 3 2 1 36 36 H 1.08994 * 110.75272 * 334.93920 * 4 2 1 37 37 H 1.09004 * 110.75428 * 98.12201 * 4 2 1 38 38 H 1.07995 * 119.84330 * 179.42856 * 8 7 6 39 39 H 1.07998 * 120.01856 * 179.89114 * 9 8 7 40 40 H 1.08001 * 119.90539 * 180.20320 * 10 9 8 41 41 H 0.96999 * 119.99460 * 0.02562 * 14 12 11 42 42 H 1.09003 * 109.47365 * 59.99474 * 15 14 12 43 43 H 1.09000 * 109.46701 * 299.99851 * 15 14 12 44 44 H 1.08991 * 111.00600 * 324.20802 * 18 16 15 45 45 H 1.09004 * 111.00084 * 88.02248 * 18 16 15 46 46 H 1.09001 * 110.36852 * 278.17238 * 19 18 16 47 47 H 1.08998 * 110.36449 * 155.84885 * 19 18 16 48 48 H 0.97002 * 119.99999 * 179.97438 * 24 23 21 49 49 H 1.09004 * 109.87531 * 120.47707 * 29 20 19 50 50 H 1.08996 * 109.88343 * 241.48426 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0748 1.4298 0.0000 4 6 2.0830 -0.8025 -1.2015 5 8 3.2477 -1.4394 -0.6492 6 6 3.0734 -1.6146 0.6867 7 6 2.0722 -0.7868 1.1779 8 6 1.7444 -0.7915 2.5148 9 6 2.4048 -1.6355 3.3945 10 6 3.3932 -2.4761 2.9308 11 6 3.7356 -2.4775 1.5782 12 6 4.7948 -3.3783 1.0851 13 8 5.0927 -3.3784 -0.0938 14 7 5.4330 -4.2005 1.9414 15 6 6.4851 -5.0946 1.4518 16 6 7.0414 -5.9141 2.6180 17 1 7.4112 -5.2605 3.4081 18 6 8.1595 -6.8732 2.1308 19 6 8.0851 -8.0011 3.1900 20 7 6.6483 -8.1459 3.4868 21 6 6.0456 -9.2701 3.9847 22 1 4.9822 -9.2741 4.1735 23 6 6.8013 -10.4046 4.2468 24 7 8.0971 -10.3999 4.0162 25 14 5.9792 -11.9380 4.9267 26 1 5.5309 -12.7990 3.8028 27 1 6.9468 -12.6866 5.7684 28 1 4.8062 -11.5473 5.7493 29 6 5.9708 -6.8811 3.1656 30 1 -0.3634 0.4546 0.9217 31 1 -0.3634 0.5707 -0.8545 32 1 -0.3633 -1.0256 -0.0670 33 1 3.1625 1.4042 -0.0671 34 1 1.6708 1.9726 -0.8545 35 1 1.7794 1.9312 0.9217 36 1 1.3587 -1.5451 -1.5361 37 1 2.3555 -0.1351 -2.0191 38 1 0.9694 -0.1343 2.8804 39 1 2.1449 -1.6339 4.4427 40 1 3.9047 -3.1355 3.6164 41 1 5.1956 -4.2001 2.8819 42 1 7.2862 -4.5040 1.0074 43 1 6.0701 -5.7671 0.7011 44 1 7.9384 -7.2572 1.1350 45 1 9.1321 -6.3814 2.1506 46 1 8.6311 -7.7142 4.0887 47 1 8.4840 -8.9304 2.7832 48 1 8.6253 -11.1925 4.1997 49 1 5.2047 -7.0528 2.4094 50 1 5.5171 -6.4648 4.0649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029024101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:25 Heat of formation + Delta-G solvation = -39.668332 kcal Electronic energy + Delta-G solvation = -29865.177348 eV Core-core repulsion = 25857.347809 eV Total energy + Delta-G solvation = -4007.829538 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.53443 -40.75932 -39.26753 -38.27621 -36.14131 -36.02669 -34.34807 -32.20630 -31.30568 -30.82083 -29.72905 -28.26866 -27.46627 -27.35950 -25.72387 -24.53948 -23.14226 -22.39577 -21.81658 -21.27456 -20.36192 -18.90465 -18.33901 -18.23001 -17.59694 -17.12586 -17.07062 -16.66400 -16.43293 -16.06519 -15.88512 -15.54864 -15.28399 -14.71606 -14.58575 -14.48658 -14.37881 -14.27560 -13.83927 -13.65813 -13.56017 -13.39321 -13.22765 -13.10801 -12.89293 -12.82299 -12.71855 -12.65854 -12.37654 -12.01767 -11.96252 -11.91723 -11.86627 -11.83070 -11.61410 -11.59915 -11.37741 -10.90867 -10.73952 -10.24021 -9.90261 -9.21001 -8.88050 -7.77298 -5.21578 -0.18962 0.29097 1.46300 1.48468 1.56924 1.82453 2.11641 2.27240 2.49650 2.77048 3.22317 3.32099 3.46470 3.59916 3.69649 3.81168 3.88145 3.92176 3.96837 4.05063 4.11380 4.23804 4.34539 4.40840 4.43865 4.48918 4.55474 4.63475 4.68390 4.72969 4.77017 4.80603 4.90060 4.92638 4.94372 5.02089 5.04386 5.11891 5.17326 5.22267 5.31889 5.32854 5.37635 5.39525 5.40955 5.47876 5.62012 5.65798 5.82759 6.11654 6.31978 6.50526 7.11248 7.18473 7.79019 8.42733 9.24658 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020129 B = 0.002096 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.693012 B =13357.118424 C =13966.977891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.047 4.047 3 C -0.131 4.131 4 C 0.040 3.960 5 O -0.313 6.313 6 C 0.139 3.861 7 C -0.179 4.179 8 C -0.036 4.036 9 C -0.149 4.149 10 C -0.054 4.054 11 C -0.186 4.186 12 C 0.551 3.449 13 O -0.578 6.578 14 N -0.712 5.712 15 C 0.145 3.855 16 C -0.093 4.093 17 H 0.099 0.901 18 C -0.123 4.123 19 C 0.152 3.848 20 N -0.628 5.628 21 C -0.239 4.239 22 H 0.080 0.920 23 C -0.070 4.070 24 N -0.949 5.949 25 Si 0.981 3.019 26 H -0.287 1.287 27 H -0.293 1.293 28 H -0.269 1.269 29 C 0.138 3.862 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.153 0.847 41 H 0.411 0.589 42 H 0.074 0.926 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.090 0.910 46 H -0.007 1.007 47 H 0.071 0.929 48 H 0.247 0.753 49 H 0.018 0.982 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.977 27.540 -3.841 32.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.047 4.047 3 C -0.188 4.188 4 C -0.034 4.034 5 O -0.226 6.226 6 C 0.091 3.909 7 C -0.180 4.180 8 C -0.054 4.054 9 C -0.167 4.167 10 C -0.073 4.073 11 C -0.190 4.190 12 C 0.340 3.660 13 O -0.459 6.459 14 N -0.365 5.365 15 C 0.021 3.979 16 C -0.112 4.112 17 H 0.117 0.883 18 C -0.162 4.162 19 C 0.027 3.973 20 N -0.354 5.354 21 C -0.368 4.368 22 H 0.098 0.902 23 C -0.262 4.262 24 N -0.599 5.599 25 Si 0.809 3.191 26 H -0.214 1.214 27 H -0.219 1.219 28 H -0.194 1.194 29 C 0.013 3.987 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.141 0.859 38 H 0.179 0.821 39 H 0.186 0.814 40 H 0.170 0.830 41 H 0.249 0.751 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.108 0.892 46 H 0.011 0.989 47 H 0.089 0.911 48 H 0.057 0.943 49 H 0.036 0.964 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -15.531 27.269 -4.767 31.742 hybrid contribution 0.011 -1.388 0.544 1.491 sum -15.520 25.881 -4.223 30.472 Atomic orbital electron populations 1.21767 0.90346 1.02588 1.04106 1.20876 0.98346 0.95834 0.89688 1.21786 1.00217 0.92842 1.03983 1.24400 0.85593 0.96154 0.97282 1.86942 1.40485 1.76496 1.18688 1.19834 0.94127 0.92719 0.84215 1.21051 1.00209 0.99908 0.96791 1.20899 0.97809 0.96668 0.89986 1.21400 0.96625 0.96876 1.01755 1.21384 0.96424 0.97774 0.91698 1.19355 1.03131 1.01633 0.94893 1.18555 0.81722 0.80241 0.85453 1.90778 1.67045 1.69940 1.18143 1.45833 1.38360 1.39918 1.12343 1.21201 0.89655 0.91332 0.95672 1.22283 0.95980 0.95713 0.97236 0.88260 1.22857 0.98391 0.96172 0.98799 1.21736 0.84520 0.97368 0.93659 1.44826 1.04915 1.09872 1.75814 1.19452 0.92889 0.89970 1.34450 0.90209 1.25651 0.96436 1.01241 1.02857 1.70055 1.05748 1.28707 1.55384 0.85043 0.77295 0.79126 0.77653 1.21441 1.21940 1.19365 1.21492 0.94307 0.86148 0.96792 0.90342 0.90137 0.92769 0.94061 0.89803 0.90619 0.89996 0.85861 0.82090 0.81422 0.82977 0.75083 0.90822 0.93170 0.92141 0.89154 0.98922 0.91093 0.94344 0.96425 0.94942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 8.56 71.98 0.62 -0.43 16 2 C -0.05 -0.62 1.03 -52.03 -0.05 -0.68 16 3 C -0.13 -1.38 8.61 71.98 0.62 -0.76 16 4 C 0.04 0.70 7.10 72.56 0.52 1.22 16 5 O -0.31 -9.07 10.12 -77.01 -0.78 -9.85 16 6 C 0.14 3.64 6.73 23.01 0.15 3.80 16 7 C -0.18 -3.20 5.04 -19.54 -0.10 -3.29 16 8 C -0.04 -0.46 9.92 22.23 0.22 -0.24 16 9 C -0.15 -1.93 10.05 22.26 0.22 -1.70 16 10 C -0.05 -0.98 9.51 22.47 0.21 -0.77 16 11 C -0.19 -4.93 5.89 -19.93 -0.12 -5.05 16 12 C 0.55 17.85 7.76 86.70 0.67 18.53 16 13 O -0.58 -23.76 15.87 10.90 0.17 -23.59 16 14 N -0.71 -19.74 5.35 -466.27 -2.49 -22.23 16 15 C 0.15 4.46 4.99 86.38 0.43 4.89 16 16 C -0.09 -3.03 3.02 -9.61 -0.03 -3.06 16 17 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 18 C -0.12 -4.57 6.53 31.99 0.21 -4.36 16 19 C 0.15 7.54 5.89 86.86 0.51 8.05 16 20 N -0.63 -32.62 3.39 -691.99 -2.35 -34.97 16 21 C -0.24 -13.53 10.27 84.03 0.86 -12.67 16 22 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 23 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 24 N -0.95 -57.15 10.09 21.65 0.22 -56.94 16 25 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 26 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 27 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 28 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 29 C 0.14 5.56 6.52 86.73 0.57 6.12 16 30 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.53 8.07 -2.38 -0.02 0.51 16 33 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 36 H 0.08 1.32 7.86 -2.39 -0.02 1.31 16 37 H 0.12 1.63 7.92 -2.39 -0.02 1.61 16 38 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 39 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.15 2.10 6.37 -2.91 -0.02 2.08 16 41 H 0.41 9.07 6.34 -92.71 -0.59 8.49 16 42 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.05 1.76 8.06 -2.39 -0.02 1.74 16 44 H 0.06 2.28 8.05 -2.39 -0.02 2.26 16 45 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 46 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 47 H 0.07 4.05 5.87 -2.39 -0.01 4.03 16 48 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 49 H 0.02 0.74 7.77 -2.38 -0.02 0.72 16 50 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -79.63 398.59 3.13 -76.50 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.35 Total: 16.89 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 5.98 Total: 6.09 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -4.62 Total: -114.14 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.61 Total: -33.43 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -79.63 3.13 -76.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029024101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.831 kcal (2) G-P(sol) polarization free energy of solvation -79.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds