Wall clock time and date at job start Sat Apr 11 2020 07:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34776 * 120.00070 * 2 1 4 4 O 1.21280 * 119.99706 * 185.32764 * 3 2 1 5 5 C 1.50703 * 119.99980 * 5.32034 * 3 2 1 6 6 C 1.52994 * 109.39457 * 178.70310 * 5 3 2 7 7 C 1.53066 * 109.43585 * 298.59456 * 5 3 2 8 8 C 1.53410 * 108.30110 * 168.20932 * 7 5 3 9 9 O 1.42829 * 108.36617 * 295.25833 * 8 7 5 10 10 C 1.35841 * 117.84460 * 49.22018 * 9 8 7 11 11 C 1.39147 * 118.49358 * 162.91777 * 10 9 8 12 12 C 1.37965 * 120.21310 * 179.76806 * 11 10 9 13 13 C 1.38292 * 119.95900 * 359.97438 * 12 11 10 14 14 C 1.38104 * 119.98468 * 0.07523 * 13 12 11 15 15 C 1.38380 * 121.80946 * 342.81380 * 10 9 8 16 16 C 1.46505 * 119.99690 * 179.97438 * 2 1 3 17 17 H 1.08997 * 110.88107 * 179.29899 * 16 2 1 18 18 C 1.55156 * 111.00254 * 303.18120 * 16 2 1 19 19 C 1.54320 * 102.94132 * 153.57833 * 18 16 2 20 20 N 1.47027 * 107.27101 * 337.80664 * 19 18 16 21 21 C 1.36935 * 125.64795 * 178.97746 * 20 19 18 22 22 H 1.07998 * 120.00294 * 179.97438 * 21 20 19 23 23 C 1.38813 * 120.00076 * 359.97127 * 21 20 19 24 24 N 1.31619 * 120.00125 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99937 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47393 * 60.00159 * 25 23 21 27 27 H 1.48502 * 109.47164 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47226 * 299.99906 * 25 23 21 29 29 C 1.47462 * 108.72018 * 358.97396 * 20 19 18 30 30 H 1.09002 * 109.46666 * 90.70602 * 1 2 3 31 31 H 1.08999 * 109.47151 * 210.70382 * 1 2 3 32 32 H 1.09000 * 109.47069 * 330.70432 * 1 2 3 33 33 H 1.08997 * 109.47909 * 299.12549 * 6 5 3 34 34 H 1.09001 * 109.47480 * 59.13215 * 6 5 3 35 35 H 1.09005 * 109.46765 * 179.12951 * 6 5 3 36 36 H 1.08999 * 109.70439 * 287.91556 * 7 5 3 37 37 H 1.09001 * 109.70116 * 48.51805 * 7 5 3 38 38 H 1.09001 * 109.68791 * 175.54082 * 8 7 5 39 39 H 1.08999 * 109.71428 * 54.99756 * 8 7 5 40 40 H 1.07995 * 119.89395 * 359.78484 * 11 10 9 41 41 H 1.08003 * 120.02227 * 180.02562 * 12 11 10 42 42 H 1.08002 * 120.00690 * 180.08881 * 13 12 11 43 43 H 1.08001 * 119.84287 * 179.97438 * 14 13 12 44 44 H 1.09004 * 110.72000 * 271.94071 * 18 16 2 45 45 H 1.08998 * 110.72099 * 35.03800 * 18 16 2 46 46 H 1.09006 * 109.88449 * 97.21817 * 19 18 16 47 47 H 1.08997 * 109.88508 * 218.38852 * 19 18 16 48 48 H 0.97001 * 119.99878 * 179.97438 * 24 23 21 49 49 H 1.09003 * 110.34986 * 265.25382 * 29 20 19 50 50 H 1.09002 * 110.40475 * 142.91957 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3478 1.1694 -0.0975 5 6 1.3903 2.4695 0.1210 6 6 2.3873 3.6300 0.1274 7 6 0.4385 2.6223 -1.0680 8 6 -0.5136 3.7891 -0.7760 9 8 -1.3203 3.4408 0.3500 10 6 -0.6935 2.9597 1.4550 11 6 -1.3860 2.9554 2.6619 12 6 -0.7852 2.4704 3.8053 13 6 0.5091 1.9862 3.7531 14 6 1.1998 1.9900 2.5572 15 6 0.6027 2.4776 1.4066 16 6 2.1975 -1.2688 0.0006 17 1 3.2737 -1.0962 -0.0120 18 6 1.7890 -2.1462 1.2133 19 6 2.0704 -3.5789 0.7136 20 7 2.0611 -3.5384 -0.7561 21 6 2.2902 -4.6038 -1.5852 22 1 2.2607 -4.4704 -2.6566 23 6 2.5604 -5.8553 -1.0489 24 7 2.5960 -6.0180 0.2568 25 14 2.8736 -7.3084 -2.1800 26 1 4.0522 -7.0235 -3.0372 27 1 3.1364 -8.5221 -1.3656 28 1 1.6818 -7.5349 -3.0365 29 6 1.7643 -2.1606 -1.1897 30 1 -0.3633 -0.0127 -1.0276 31 1 -0.3633 -0.8836 0.5247 32 1 -0.3633 0.8962 0.5029 33 1 3.0569 3.5292 0.9816 34 1 2.9692 3.6142 -0.7941 35 1 1.8462 4.5735 0.1994 36 1 1.0104 2.8320 -1.9719 37 1 -0.1348 1.7047 -1.1999 38 1 -1.1504 3.9691 -1.6422 39 1 0.0627 4.6866 -0.5513 40 1 -2.3971 3.3326 2.7038 41 1 -1.3257 2.4681 4.7404 42 1 0.9797 1.6051 4.6474 43 1 2.2107 1.6117 2.5191 44 1 2.4040 -1.9131 2.0825 45 1 0.7318 -2.0162 1.4446 46 1 3.0460 -3.9106 1.0691 47 1 1.2938 -4.2553 1.0707 48 1 2.7844 -6.8926 0.6315 49 1 0.6975 -2.0451 -1.3816 50 1 2.3402 -1.9102 -2.0806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033592490.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:19:59 Heat of formation + Delta-G solvation = -20.397859 kcal Electronic energy + Delta-G solvation = -32070.086128 eV Core-core repulsion = 28063.092219 eV Total energy + Delta-G solvation = -4006.993908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.74216 -40.69714 -39.10453 -38.44630 -36.55692 -36.09318 -33.98874 -31.68972 -31.32888 -31.13049 -29.54795 -29.19845 -27.90400 -26.78611 -25.68083 -24.62109 -23.72428 -22.21531 -22.04895 -20.68649 -20.02341 -18.97346 -18.91597 -18.35832 -17.56836 -17.20414 -17.00807 -16.70522 -16.12371 -15.95567 -15.73343 -15.55389 -15.35273 -14.96963 -14.62596 -14.59996 -14.35405 -14.24069 -14.09244 -13.76129 -13.64423 -13.48914 -13.21569 -13.12868 -12.95075 -12.85212 -12.83692 -12.71636 -12.44138 -12.33126 -12.12813 -12.09741 -12.01851 -11.83168 -11.64020 -11.57575 -11.45895 -10.78021 -10.73859 -9.76134 -9.73072 -9.11108 -8.94558 -7.87731 -5.25008 0.28763 0.44742 1.44043 1.45225 1.48664 1.54822 1.82994 2.34882 2.48683 2.75461 3.27326 3.30995 3.42380 3.56279 3.63078 3.68921 3.83274 3.89570 3.98191 4.08531 4.13525 4.16365 4.22146 4.30170 4.44296 4.49053 4.49722 4.51567 4.54615 4.57239 4.59019 4.71127 4.77532 4.79117 4.83685 4.89933 4.92760 4.99105 5.06013 5.08467 5.20475 5.31997 5.39314 5.46464 5.50250 5.57475 5.60565 5.68436 5.83045 6.14500 6.32522 6.46268 7.03057 7.05995 7.71234 8.35451 9.22275 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018009 B = 0.003009 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.413141 B = 9304.223483 C = 9770.283980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.589 5.589 3 C 0.525 3.475 4 O -0.579 6.579 5 C -0.027 4.027 6 C -0.121 4.121 7 C -0.168 4.168 8 C 0.065 3.935 9 O -0.319 6.319 10 C 0.131 3.869 11 C -0.153 4.153 12 C -0.078 4.078 13 C -0.153 4.153 14 C -0.091 4.091 15 C -0.154 4.154 16 C 0.140 3.860 17 H 0.080 0.920 18 C -0.132 4.132 19 C 0.191 3.809 20 N -0.624 5.624 21 C -0.249 4.249 22 H 0.082 0.918 23 C -0.062 4.062 24 N -0.950 5.950 25 Si 0.981 3.019 26 H -0.279 1.279 27 H -0.292 1.292 28 H -0.274 1.274 29 C 0.135 3.865 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.140 0.860 39 H 0.080 0.920 40 H 0.150 0.850 41 H 0.157 0.843 42 H 0.136 0.864 43 H 0.100 0.900 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.011 0.989 47 H 0.017 0.983 48 H 0.248 0.752 49 H 0.039 0.961 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.966 24.736 3.797 27.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.319 5.319 3 C 0.314 3.686 4 O -0.458 6.458 5 C -0.030 4.030 6 C -0.178 4.178 7 C -0.205 4.205 8 C -0.009 4.009 9 O -0.233 6.233 10 C 0.086 3.914 11 C -0.171 4.171 12 C -0.095 4.095 13 C -0.171 4.171 14 C -0.110 4.110 15 C -0.155 4.155 16 C 0.035 3.965 17 H 0.098 0.902 18 C -0.171 4.171 19 C 0.065 3.935 20 N -0.351 5.351 21 C -0.377 4.377 22 H 0.100 0.900 23 C -0.255 4.255 24 N -0.598 5.598 25 Si 0.809 3.191 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.200 1.200 29 C 0.008 3.992 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.158 0.842 39 H 0.098 0.902 40 H 0.167 0.833 41 H 0.174 0.826 42 H 0.154 0.846 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.029 0.971 47 H 0.035 0.965 48 H 0.058 0.942 49 H 0.056 0.944 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.500 24.550 3.714 26.959 hybrid contribution 1.049 -1.530 -0.465 1.913 sum -9.451 23.020 3.248 25.096 Atomic orbital electron populations 1.22361 0.78205 1.04532 1.02784 1.47652 1.07762 1.04593 1.71882 1.20878 0.87247 0.85659 0.74776 1.90673 1.15951 1.87634 1.51569 1.19624 0.96012 0.92672 0.94676 1.21727 0.97458 0.95809 1.02811 1.22731 0.98286 1.02279 0.97241 1.23240 0.94070 0.95857 0.87782 1.86012 1.36457 1.78740 1.22078 1.18731 0.90264 0.94792 0.87607 1.20899 1.01943 1.04622 0.89653 1.21285 0.94270 0.95242 0.98742 1.21238 0.95855 1.02280 0.97735 1.20913 0.99211 0.97997 0.92851 1.19294 0.94904 1.06684 0.94597 1.21954 0.96323 0.82397 0.95867 0.90187 1.23025 1.01976 0.94983 0.97137 1.20852 0.97894 0.91694 0.83016 1.44655 1.83444 1.04461 1.02533 1.19412 1.41231 0.87395 0.89707 0.89997 1.25672 1.02034 1.00276 0.97540 1.70169 1.56177 1.22707 1.10766 0.85117 0.78273 0.78192 0.77515 1.20485 1.21841 1.19978 1.21821 0.97897 0.84294 0.95167 0.90964 0.90924 0.88624 0.93158 0.91681 0.89598 0.87975 0.88848 0.84182 0.90197 0.83250 0.82550 0.84632 0.88182 0.90929 0.89902 0.97069 0.96516 0.94238 0.94370 0.94819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.53 7.41 127.77 0.95 2.47 16 2 N -0.59 -17.96 2.90 -814.80 -2.37 -20.32 16 3 C 0.53 16.06 5.20 87.66 0.46 16.51 16 4 O -0.58 -22.36 15.36 -3.03 -0.05 -22.40 16 5 C -0.03 -0.58 0.39 -53.63 -0.02 -0.60 16 6 C -0.12 -2.45 7.55 71.98 0.54 -1.91 16 7 C -0.17 -2.73 4.60 30.75 0.14 -2.59 16 8 C 0.06 0.76 6.96 72.12 0.50 1.26 16 9 O -0.32 -5.25 10.27 -91.77 -0.94 -6.19 16 10 C 0.13 2.43 5.36 22.52 0.12 2.55 16 11 C -0.15 -2.43 9.94 22.42 0.22 -2.21 16 12 C -0.08 -1.16 10.04 22.22 0.22 -0.94 16 13 C -0.15 -2.84 10.04 22.25 0.22 -2.61 16 14 C -0.09 -2.09 9.02 22.30 0.20 -1.89 16 15 C -0.15 -3.24 2.70 -19.75 -0.05 -3.29 16 16 C 0.14 5.35 3.45 46.38 0.16 5.51 16 17 H 0.08 3.52 7.02 -2.39 -0.02 3.50 16 18 C -0.13 -5.12 6.51 31.78 0.21 -4.91 16 19 C 0.19 9.71 5.37 86.73 0.47 10.18 16 20 N -0.62 -33.16 3.40 -691.89 -2.35 -35.51 16 21 C -0.25 -14.30 10.28 84.03 0.86 -13.43 16 22 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 23 C -0.06 -3.58 5.49 84.86 0.47 -3.12 16 24 N -0.95 -57.83 10.31 21.65 0.22 -57.60 16 25 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 26 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 29 C 0.13 5.78 6.81 86.85 0.59 6.37 16 30 H 0.07 1.57 6.96 -2.39 -0.02 1.55 16 31 H 0.07 1.86 6.20 -2.39 -0.01 1.84 16 32 H 0.10 2.08 3.22 -2.39 -0.01 2.07 16 33 H 0.05 1.18 8.09 -2.39 -0.02 1.16 16 34 H 0.06 1.37 8.06 -2.39 -0.02 1.35 16 35 H 0.09 1.28 6.63 -2.38 -0.02 1.26 16 36 H 0.10 1.47 8.10 -2.39 -0.02 1.45 16 37 H 0.09 1.62 4.38 -2.39 -0.01 1.61 16 38 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 0.78 6.56 -2.39 -0.02 0.76 16 40 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 43 H 0.10 2.70 7.36 -2.91 -0.02 2.68 16 44 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 45 H 0.08 2.87 6.19 -2.39 -0.01 2.85 16 46 H 0.01 0.64 7.38 -2.38 -0.02 0.62 16 47 H 0.02 0.93 7.50 -2.39 -0.02 0.91 16 48 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 49 H 0.04 1.53 7.09 -2.39 -0.02 1.51 16 50 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -73.17 375.73 3.76 -69.41 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.95 Total: 16.93 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 6.26 Total: 7.35 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -4.49 Total: -113.44 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.99 Total: -28.59 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -73.17 3.76 -69.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033592490.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.012 kcal (2) G-P(sol) polarization free energy of solvation -73.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds