Wall clock time and date at job start Sat Apr 11 2020 07:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 120.00189 * 2 1 4 4 O 1.21588 * 119.99706 * 184.75594 * 3 2 1 5 5 C 1.47536 * 120.00163 * 4.74823 * 3 2 1 6 6 C 1.39524 * 120.05396 * 326.80024 * 5 3 2 7 7 C 1.37781 * 120.18707 * 179.71749 * 6 5 3 8 8 C 1.38652 * 119.97235 * 0.35791 * 7 6 5 9 9 C 1.37655 * 120.32180 * 359.47415 * 8 7 6 10 10 C 1.38881 * 120.86901 * 0.60002 * 9 8 7 11 11 O 1.35855 * 111.30913 * 179.29238 * 10 9 8 12 12 C 1.43779 * 109.26305 * 19.09886 * 11 10 9 13 13 C 1.51667 * 132.14059 * 181.18787 * 9 8 7 14 14 C 1.53006 * 110.94293 * 282.31029 * 13 9 8 15 15 C 1.53002 * 110.94519 * 46.00283 * 13 9 8 16 16 C 1.46504 * 119.99481 * 179.97438 * 2 1 3 17 17 H 1.09001 * 110.63696 * 178.31322 * 16 2 1 18 18 C 1.55157 * 110.71896 * 54.98160 * 16 2 1 19 19 C 1.54913 * 101.57894 * 277.13549 * 18 16 2 20 20 N 1.47427 * 104.83354 * 322.99168 * 19 18 16 21 21 C 1.36930 * 125.64717 * 204.09552 * 20 19 18 22 22 H 1.08008 * 119.99806 * 164.77728 * 21 20 19 23 23 C 1.38812 * 120.00263 * 344.77503 * 21 20 19 24 24 N 1.31614 * 119.99773 * 0.72728 * 23 21 20 25 25 Si 1.86797 * 120.00144 * 180.72292 * 23 21 20 26 26 H 1.48507 * 109.46821 * 94.98711 * 25 23 21 27 27 H 1.48499 * 109.47200 * 214.98768 * 25 23 21 28 28 H 1.48502 * 109.47250 * 334.99261 * 25 23 21 29 29 C 1.47024 * 108.69997 * 24.12602 * 20 19 18 30 30 H 1.09002 * 109.47043 * 95.20161 * 1 2 3 31 31 H 1.08996 * 109.47601 * 215.20871 * 1 2 3 32 32 H 1.09002 * 109.46777 * 335.20794 * 1 2 3 33 33 H 1.08005 * 119.90740 * 359.96761 * 6 5 3 34 34 H 1.08001 * 120.01398 * 180.09274 * 7 6 5 35 35 H 1.08001 * 119.83507 * 179.75465 * 8 7 6 36 36 H 1.08997 * 110.75183 * 90.54901 * 12 11 10 37 37 H 1.09004 * 110.74899 * 213.72686 * 12 11 10 38 38 H 1.08996 * 109.47347 * 59.99541 * 14 13 9 39 39 H 1.08998 * 109.46912 * 180.02562 * 14 13 9 40 40 H 1.09001 * 109.46705 * 299.99679 * 14 13 9 41 41 H 1.08999 * 109.46853 * 59.99981 * 15 13 9 42 42 H 1.08999 * 109.47487 * 180.02562 * 15 13 9 43 43 H 1.09004 * 109.47154 * 300.00272 * 15 13 9 44 44 H 1.09002 * 111.00544 * 35.20630 * 18 16 2 45 45 H 1.09001 * 111.00339 * 159.06347 * 18 16 2 46 46 H 1.09003 * 110.36425 * 204.15552 * 19 18 16 47 47 H 1.08998 * 110.46072 * 81.87816 * 19 18 16 48 48 H 0.97009 * 120.00215 * 180.02562 * 24 23 21 49 49 H 1.08991 * 109.88245 * 239.52118 * 29 20 19 50 50 H 1.09001 * 109.87639 * 118.36065 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1689 -0.0873 5 6 1.4051 2.4427 0.1058 6 6 0.1365 2.5681 -0.4613 7 6 -0.5536 3.7562 -0.3592 8 6 0.0159 4.8335 0.3023 9 6 1.2655 4.7197 0.8685 10 6 1.9831 3.5340 0.7788 11 8 3.1922 3.6414 1.3888 12 6 3.1680 4.7557 2.2970 13 6 2.1177 5.6948 1.6579 14 6 2.7858 6.7122 0.7308 15 6 1.2883 6.3998 2.7331 16 6 2.1974 -1.2688 0.0006 17 1 3.2726 -1.0918 -0.0295 18 6 1.7506 -2.1611 -1.1875 19 6 0.4717 -2.8225 -0.6159 20 7 0.7742 -3.0617 0.8070 21 6 0.1808 -4.0063 1.6012 22 1 0.6280 -4.2749 2.5469 23 6 -0.9955 -4.6185 1.1909 24 7 -1.5328 -4.3015 0.0319 25 14 -1.8158 -5.8923 2.2834 26 1 -2.8616 -5.2365 3.1091 27 1 -2.4388 -6.9422 1.4380 28 1 -0.7993 -6.5108 3.1720 29 6 1.8181 -2.1177 1.2322 30 1 -0.3633 -0.0932 -1.0234 31 1 -0.3634 -0.8396 0.5925 32 1 -0.3633 0.9330 0.4309 33 1 -0.3075 1.7302 -0.9783 34 1 -1.5361 3.8498 -0.7979 35 1 -0.5254 5.7650 0.3777 36 1 2.8489 4.4380 3.2897 37 1 4.1445 5.2380 2.3427 38 1 2.0202 7.2718 0.1935 39 1 3.3913 7.3994 1.3217 40 1 3.4223 6.1897 0.0166 41 1 0.8775 5.6590 3.4190 42 1 1.9227 7.0938 3.2845 43 1 0.4736 6.9493 2.2613 44 1 1.5192 -1.5567 -2.0647 45 1 2.5075 -2.9103 -1.4198 46 1 0.2723 -3.7654 -1.1251 47 1 -0.3812 -2.1510 -0.7147 48 1 -2.3550 -4.7290 -0.2547 49 1 2.6907 -2.6655 1.5879 50 1 1.4348 -1.4730 2.0231 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033717593.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:20:09 Heat of formation + Delta-G solvation = 13.689951 kcal Electronic energy + Delta-G solvation = -31244.948787 eV Core-core repulsion = 27239.433038 eV Total energy + Delta-G solvation = -4005.515750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.68907 -39.85026 -37.65099 -37.12228 -35.33740 -34.37297 -32.27778 -30.68050 -30.04774 -29.06035 -27.91315 -27.73845 -26.75401 -26.31756 -24.63177 -23.57391 -22.52456 -21.32716 -20.19872 -19.69140 -18.56370 -17.58584 -16.99411 -16.67436 -16.57799 -16.28863 -15.72735 -15.31330 -14.91210 -14.69521 -14.41380 -14.10786 -13.94622 -13.79777 -13.62607 -13.21705 -13.08635 -12.89700 -12.68875 -12.55862 -12.34199 -12.13829 -11.84659 -11.78869 -11.77505 -11.60709 -11.49208 -11.17391 -11.10996 -11.03345 -10.89181 -10.79460 -10.73333 -10.27147 -10.07013 -9.89554 -9.70174 -9.40805 -8.92293 -8.59589 -8.36024 -8.12000 -6.77379 -5.77132 -3.12231 0.85398 1.17822 2.95163 3.09625 3.29902 3.38070 3.44229 3.45705 3.70182 3.94737 4.20655 4.47863 4.51531 4.58094 4.70654 4.81571 5.04667 5.09719 5.16728 5.17606 5.21163 5.29172 5.40016 5.42674 5.45663 5.46058 5.50629 5.53860 5.59648 5.69295 5.75405 5.80946 5.87443 5.88536 5.93868 6.07626 6.14173 6.25307 6.28449 6.33773 6.40674 6.42021 6.57853 6.64669 6.75832 6.99452 7.11363 7.48599 7.58455 7.77302 7.79017 8.26071 8.49530 9.18414 9.78628 10.47882 11.35339 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018352 B = 0.002715 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.373285 B =10310.738271 C =10579.207333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.588 5.588 3 C 0.557 3.443 4 O -0.538 6.538 5 C -0.149 4.149 6 C -0.062 4.062 7 C -0.159 4.159 8 C -0.046 4.046 9 C -0.178 4.178 10 C 0.165 3.835 11 O -0.280 6.280 12 C 0.052 3.948 13 C -0.052 4.052 14 C -0.134 4.134 15 C -0.135 4.135 16 C 0.128 3.872 17 H 0.100 0.900 18 C -0.157 4.157 19 C 0.166 3.834 20 N -0.601 5.601 21 C -0.228 4.228 22 H 0.074 0.926 23 C -0.004 4.004 24 N -0.918 5.918 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.126 3.874 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.134 0.866 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.036 0.964 48 H 0.253 0.747 49 H 0.032 0.968 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.983 23.127 0.442 23.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.319 5.319 3 C 0.345 3.655 4 O -0.416 6.416 5 C -0.152 4.152 6 C -0.080 4.080 7 C -0.178 4.178 8 C -0.064 4.064 9 C -0.179 4.179 10 C 0.117 3.883 11 O -0.192 6.192 12 C -0.023 4.023 13 C -0.052 4.052 14 C -0.191 4.191 15 C -0.192 4.192 16 C 0.025 3.975 17 H 0.118 0.882 18 C -0.196 4.196 19 C 0.041 3.959 20 N -0.328 5.328 21 C -0.356 4.356 22 H 0.092 0.908 23 C -0.201 4.201 24 N -0.565 5.565 25 Si 0.741 3.259 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.206 1.206 29 C 0.000 4.000 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.170 0.830 34 H 0.152 0.848 35 H 0.143 0.857 36 H 0.097 0.903 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.053 0.947 48 H 0.063 0.937 49 H 0.050 0.950 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.666 22.821 0.388 23.117 hybrid contribution -0.716 -0.585 0.628 1.118 sum 2.950 22.236 1.016 22.454 Atomic orbital electron populations 1.22637 0.79449 1.04413 1.02150 1.47656 1.07237 1.05264 1.71779 1.18115 0.87033 0.83338 0.76995 1.90765 1.13481 1.87140 1.50209 1.19196 0.95988 0.92883 1.07169 1.21741 0.91630 0.98518 0.96126 1.20985 1.01150 0.92868 1.02758 1.20401 0.92726 0.98758 0.94557 1.20627 0.97039 0.94330 1.05907 1.19391 0.84614 0.92340 0.91951 1.86977 1.28341 1.49920 1.53964 1.24089 1.00578 0.84852 0.92829 1.20798 0.94115 0.94955 0.95322 1.21788 1.00572 0.97754 0.99028 1.21769 0.99646 1.00352 0.97430 1.22115 0.96478 0.81964 0.96977 0.88194 1.23364 1.01462 0.98424 0.96399 1.21627 0.90896 0.99072 0.84272 1.44478 1.43602 1.37489 1.07262 1.19010 1.02702 1.13057 1.00869 0.90824 1.24879 0.96969 1.00626 0.97590 1.69924 1.21121 1.45448 1.20010 0.86128 0.79459 0.80747 0.79595 1.21605 1.21728 1.20631 1.21651 0.92897 0.91342 0.94152 0.92242 0.88232 0.90628 0.82962 0.84817 0.85712 0.90270 0.87449 0.91857 0.91797 0.91940 0.91977 0.91839 0.91792 0.91925 0.91058 0.91262 0.94667 0.93719 0.94982 0.95443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.90 6.83 59.85 0.41 1.31 16 2 N -0.59 -10.57 2.82 -173.06 -0.49 -11.06 16 3 C 0.56 10.30 7.41 -12.47 -0.09 10.21 16 4 O -0.54 -11.62 15.84 1.47 0.02 -11.59 16 5 C -0.15 -2.30 5.47 -104.72 -0.57 -2.88 16 6 C -0.06 -0.77 7.39 -39.27 -0.29 -1.06 16 7 C -0.16 -1.59 10.05 -39.60 -0.40 -1.99 16 8 C -0.05 -0.45 9.91 -39.64 -0.39 -0.84 16 9 C -0.18 -2.01 5.05 -104.12 -0.53 -2.54 16 10 C 0.16 2.43 6.69 -38.44 -0.26 2.17 16 11 O -0.28 -4.26 10.62 -23.10 -0.25 -4.51 16 12 C 0.05 0.52 7.09 38.06 0.27 0.79 16 13 C -0.05 -0.45 1.03 -154.28 -0.16 -0.61 16 14 C -0.13 -1.01 8.61 37.16 0.32 -0.69 16 15 C -0.13 -0.88 8.56 37.16 0.32 -0.56 16 16 C 0.13 2.48 3.58 -66.10 -0.24 2.25 16 17 H 0.10 1.97 7.00 -51.93 -0.36 1.60 16 18 C -0.16 -3.03 6.53 -24.58 -0.16 -3.19 16 19 C 0.17 3.85 4.54 -2.53 -0.01 3.84 16 20 N -0.60 -15.00 2.99 -170.07 -0.51 -15.50 16 21 C -0.23 -6.24 10.23 -15.06 -0.15 -6.39 16 22 H 0.07 1.99 7.83 -52.48 -0.41 1.57 16 23 C 0.00 -0.11 5.47 -17.43 -0.10 -0.20 16 24 N -0.92 -25.89 10.58 55.49 0.59 -25.31 16 25 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 C 0.13 2.74 6.20 -3.07 -0.02 2.72 16 30 H 0.06 0.88 7.10 -51.93 -0.37 0.52 16 31 H 0.10 1.97 5.60 -51.93 -0.29 1.68 16 32 H 0.08 1.06 4.69 -51.93 -0.24 0.82 16 33 H 0.15 1.74 4.91 -52.48 -0.26 1.49 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.08 0.71 7.86 -51.93 -0.41 0.30 16 37 H 0.11 0.84 7.93 -51.93 -0.41 0.42 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 46 H 0.07 1.82 6.95 -51.93 -0.36 1.46 16 47 H 0.04 0.84 5.41 -51.93 -0.28 0.56 16 48 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.03 0.62 8.04 -51.93 -0.42 0.20 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -32.87 385.31 -9.49 -42.36 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.60 Total: 0.79 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.05 Total: 2.34 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.41 Total: -51.87 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.22 Total: -16.10 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.87 -9.49 -42.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033717593.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.051 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds