Wall clock time and date at job start Sat Apr 11 2020 07:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 120.00189 * 2 1 4 4 O 1.21588 * 119.99706 * 184.75594 * 3 2 1 5 5 C 1.47536 * 120.00163 * 4.74823 * 3 2 1 6 6 C 1.39524 * 120.05396 * 326.80024 * 5 3 2 7 7 C 1.37781 * 120.18707 * 179.71749 * 6 5 3 8 8 C 1.38652 * 119.97235 * 0.35791 * 7 6 5 9 9 C 1.37655 * 120.32180 * 359.47415 * 8 7 6 10 10 C 1.38881 * 120.86901 * 0.60002 * 9 8 7 11 11 O 1.35855 * 111.30913 * 179.29238 * 10 9 8 12 12 C 1.43779 * 109.26305 * 19.09886 * 11 10 9 13 13 C 1.51667 * 132.14059 * 181.18787 * 9 8 7 14 14 C 1.53006 * 110.94293 * 282.31029 * 13 9 8 15 15 C 1.53002 * 110.94519 * 46.00283 * 13 9 8 16 16 C 1.46504 * 119.99481 * 179.97438 * 2 1 3 17 17 H 1.09001 * 110.63696 * 178.31322 * 16 2 1 18 18 C 1.55157 * 110.71896 * 54.98160 * 16 2 1 19 19 C 1.54913 * 101.57894 * 277.13549 * 18 16 2 20 20 N 1.47427 * 104.83354 * 322.99168 * 19 18 16 21 21 C 1.36930 * 125.64717 * 204.09552 * 20 19 18 22 22 H 1.08008 * 119.99806 * 164.77728 * 21 20 19 23 23 C 1.38812 * 120.00263 * 344.77503 * 21 20 19 24 24 N 1.31614 * 119.99773 * 0.72728 * 23 21 20 25 25 Si 1.86797 * 120.00144 * 180.72292 * 23 21 20 26 26 H 1.48507 * 109.46821 * 94.98711 * 25 23 21 27 27 H 1.48499 * 109.47200 * 214.98768 * 25 23 21 28 28 H 1.48502 * 109.47250 * 334.99261 * 25 23 21 29 29 C 1.47024 * 108.69997 * 24.12602 * 20 19 18 30 30 H 1.09002 * 109.47043 * 95.20161 * 1 2 3 31 31 H 1.08996 * 109.47601 * 215.20871 * 1 2 3 32 32 H 1.09002 * 109.46777 * 335.20794 * 1 2 3 33 33 H 1.08005 * 119.90740 * 359.96761 * 6 5 3 34 34 H 1.08001 * 120.01398 * 180.09274 * 7 6 5 35 35 H 1.08001 * 119.83507 * 179.75465 * 8 7 6 36 36 H 1.08997 * 110.75183 * 90.54901 * 12 11 10 37 37 H 1.09004 * 110.74899 * 213.72686 * 12 11 10 38 38 H 1.08996 * 109.47347 * 59.99541 * 14 13 9 39 39 H 1.08998 * 109.46912 * 180.02562 * 14 13 9 40 40 H 1.09001 * 109.46705 * 299.99679 * 14 13 9 41 41 H 1.08999 * 109.46853 * 59.99981 * 15 13 9 42 42 H 1.08999 * 109.47487 * 180.02562 * 15 13 9 43 43 H 1.09004 * 109.47154 * 300.00272 * 15 13 9 44 44 H 1.09002 * 111.00544 * 35.20630 * 18 16 2 45 45 H 1.09001 * 111.00339 * 159.06347 * 18 16 2 46 46 H 1.09003 * 110.36425 * 204.15552 * 19 18 16 47 47 H 1.08998 * 110.46072 * 81.87816 * 19 18 16 48 48 H 0.97009 * 120.00215 * 180.02562 * 24 23 21 49 49 H 1.08991 * 109.88245 * 239.52118 * 29 20 19 50 50 H 1.09001 * 109.87639 * 118.36065 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1689 -0.0873 5 6 1.4051 2.4427 0.1058 6 6 0.1365 2.5681 -0.4613 7 6 -0.5536 3.7562 -0.3592 8 6 0.0159 4.8335 0.3023 9 6 1.2655 4.7197 0.8685 10 6 1.9831 3.5340 0.7788 11 8 3.1922 3.6414 1.3888 12 6 3.1680 4.7557 2.2970 13 6 2.1177 5.6948 1.6579 14 6 2.7858 6.7122 0.7308 15 6 1.2883 6.3998 2.7331 16 6 2.1974 -1.2688 0.0006 17 1 3.2726 -1.0918 -0.0295 18 6 1.7506 -2.1611 -1.1875 19 6 0.4717 -2.8225 -0.6159 20 7 0.7742 -3.0617 0.8070 21 6 0.1808 -4.0063 1.6012 22 1 0.6280 -4.2749 2.5469 23 6 -0.9955 -4.6185 1.1909 24 7 -1.5328 -4.3015 0.0319 25 14 -1.8158 -5.8923 2.2834 26 1 -2.8616 -5.2365 3.1091 27 1 -2.4388 -6.9422 1.4380 28 1 -0.7993 -6.5108 3.1720 29 6 1.8181 -2.1177 1.2322 30 1 -0.3633 -0.0932 -1.0234 31 1 -0.3634 -0.8396 0.5925 32 1 -0.3633 0.9330 0.4309 33 1 -0.3075 1.7302 -0.9783 34 1 -1.5361 3.8498 -0.7979 35 1 -0.5254 5.7650 0.3777 36 1 2.8489 4.4380 3.2897 37 1 4.1445 5.2380 2.3427 38 1 2.0202 7.2718 0.1935 39 1 3.3913 7.3994 1.3217 40 1 3.4223 6.1897 0.0166 41 1 0.8775 5.6590 3.4190 42 1 1.9227 7.0938 3.2845 43 1 0.4736 6.9493 2.2613 44 1 1.5192 -1.5567 -2.0647 45 1 2.5075 -2.9103 -1.4198 46 1 0.2723 -3.7654 -1.1251 47 1 -0.3812 -2.1510 -0.7147 48 1 -2.3550 -4.7290 -0.2547 49 1 2.6907 -2.6655 1.5879 50 1 1.4348 -1.4730 2.0231 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033717593.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:20:08 Heat of formation + Delta-G solvation = -5.200560 kcal Electronic energy + Delta-G solvation = -31245.767941 eV Core-core repulsion = 27239.433038 eV Total energy + Delta-G solvation = -4006.334904 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.60187 -41.24849 -39.09599 -38.32064 -36.16810 -35.95081 -34.09351 -31.91708 -31.00050 -30.75934 -29.51609 -28.25922 -27.83133 -27.45791 -26.42214 -24.80479 -23.47704 -22.46356 -22.07859 -20.91095 -19.84935 -18.91317 -18.59373 -17.85233 -17.72416 -17.31919 -16.90245 -16.72447 -16.26632 -16.22031 -15.66083 -15.56071 -15.15513 -14.68414 -14.65999 -14.36668 -14.21428 -13.96335 -13.85179 -13.74020 -13.61137 -13.49517 -13.31331 -12.94577 -12.93459 -12.79755 -12.77025 -12.55720 -12.45113 -12.35999 -12.05789 -11.94817 -11.90507 -11.86104 -11.80839 -11.58153 -11.56564 -10.80546 -10.63761 -9.91281 -9.71128 -9.18420 -8.80346 -7.86887 -5.24080 -0.11866 0.28860 1.48037 1.48188 1.57585 1.67892 1.93767 2.25396 2.49664 2.69452 3.23208 3.32480 3.38705 3.54648 3.69502 3.84063 3.87723 3.92767 3.96892 4.08815 4.17461 4.24033 4.34722 4.34985 4.40039 4.49031 4.54818 4.57653 4.60088 4.66184 4.75539 4.77995 4.86115 4.88503 4.93494 4.95170 4.99886 5.03523 5.08880 5.17979 5.24091 5.32708 5.37910 5.40625 5.46666 5.53321 5.62385 5.63399 5.77550 6.11243 6.22414 6.36709 7.06816 7.10753 7.74415 8.43298 9.24033 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018352 B = 0.002715 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.373285 B =10310.738271 C =10579.207333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.589 5.589 3 C 0.554 3.446 4 O -0.579 6.579 5 C -0.181 4.181 6 C -0.070 4.070 7 C -0.148 4.148 8 C -0.037 4.037 9 C -0.176 4.176 10 C 0.134 3.866 11 O -0.319 6.319 12 C 0.040 3.960 13 C -0.046 4.046 14 C -0.131 4.131 15 C -0.130 4.130 16 C 0.137 3.863 17 H 0.098 0.902 18 C -0.141 4.141 19 C 0.176 3.824 20 N -0.616 5.616 21 C -0.247 4.247 22 H 0.071 0.929 23 C -0.051 4.051 24 N -0.939 5.939 25 Si 0.975 3.025 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.274 1.274 29 C 0.130 3.870 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.158 0.842 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.035 0.965 47 H 0.029 0.971 48 H 0.250 0.750 49 H 0.033 0.967 50 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.477 25.987 0.675 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.319 5.319 3 C 0.345 3.655 4 O -0.461 6.461 5 C -0.185 4.185 6 C -0.088 4.088 7 C -0.166 4.166 8 C -0.055 4.055 9 C -0.177 4.177 10 C 0.087 3.913 11 O -0.232 6.232 12 C -0.034 4.034 13 C -0.046 4.046 14 C -0.188 4.188 15 C -0.188 4.188 16 C 0.033 3.967 17 H 0.116 0.884 18 C -0.180 4.180 19 C 0.051 3.949 20 N -0.343 5.343 21 C -0.376 4.376 22 H 0.089 0.911 23 C -0.246 4.246 24 N -0.586 5.586 25 Si 0.803 3.197 26 H -0.212 1.212 27 H -0.219 1.219 28 H -0.199 1.199 29 C 0.003 3.997 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.176 0.824 34 H 0.187 0.813 35 H 0.181 0.819 36 H 0.101 0.899 37 H 0.142 0.858 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.053 0.947 47 H 0.047 0.953 48 H 0.059 0.941 49 H 0.051 0.949 50 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.154 25.698 0.629 25.796 hybrid contribution -0.227 -1.394 0.586 1.529 sum 1.927 24.304 1.215 24.411 Atomic orbital electron populations 1.22627 0.78309 1.04095 1.02633 1.47684 1.07840 1.04740 1.71682 1.18681 0.86754 0.84310 0.75723 1.90722 1.15340 1.87801 1.52196 1.19193 0.97495 0.91733 1.10032 1.21843 0.90659 1.00050 0.96216 1.21417 1.02047 0.91646 1.01455 1.20889 0.91920 1.00074 0.92604 1.21034 0.97471 0.93599 1.05578 1.19742 0.85162 0.93523 0.92873 1.86915 1.29290 1.51994 1.55049 1.24419 1.02317 0.84257 0.92385 1.20864 0.93479 0.94515 0.95732 1.21784 1.00789 0.97537 0.98706 1.21767 0.99997 1.00313 0.96676 1.21889 0.96566 0.82506 0.95758 0.88404 1.23226 0.99564 0.98405 0.96786 1.21435 0.92534 0.97453 0.83443 1.44656 1.43986 1.37685 1.07965 1.19283 1.03273 1.13847 1.01213 0.91131 1.25611 0.97475 1.02605 0.98860 1.70092 1.21145 1.46288 1.21117 0.85132 0.78361 0.78298 0.77904 1.21208 1.21853 1.19948 1.21658 0.91963 0.91029 0.95004 0.90664 0.91852 0.88161 0.82430 0.81324 0.81904 0.89876 0.85785 0.90587 0.89691 0.94213 0.92765 0.90051 0.90300 0.89930 0.90413 0.94651 0.95274 0.94073 0.94945 0.96375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.12 6.83 127.77 0.87 2.99 16 2 N -0.59 -21.59 2.82 -819.71 -2.31 -23.91 16 3 C 0.55 21.14 7.41 86.70 0.64 21.78 16 4 O -0.58 -26.17 15.84 -0.34 -0.01 -26.17 16 5 C -0.18 -5.63 5.47 -19.93 -0.11 -5.74 16 6 C -0.07 -1.61 7.39 22.47 0.17 -1.45 16 7 C -0.15 -2.43 10.05 22.26 0.22 -2.20 16 8 C -0.04 -0.57 9.91 22.23 0.22 -0.35 16 9 C -0.18 -3.62 5.05 -19.54 -0.10 -3.72 16 10 C 0.13 3.97 6.69 23.01 0.15 4.12 16 11 O -0.32 -10.05 10.62 -88.26 -0.94 -10.99 16 12 C 0.04 0.79 7.09 72.56 0.51 1.30 16 13 C -0.05 -0.70 1.03 -52.03 -0.05 -0.75 16 14 C -0.13 -1.64 8.61 71.98 0.62 -1.02 16 15 C -0.13 -1.26 8.56 71.98 0.62 -0.64 16 16 C 0.14 5.44 3.58 46.18 0.17 5.60 16 17 H 0.10 3.97 7.00 -2.39 -0.02 3.95 16 18 C -0.14 -5.45 6.53 31.99 0.21 -5.25 16 19 C 0.18 8.36 4.54 86.86 0.39 8.76 16 20 N -0.62 -31.60 2.99 -691.99 -2.07 -33.67 16 21 C -0.25 -13.83 10.23 84.03 0.86 -12.97 16 22 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 23 C -0.05 -2.84 5.47 84.86 0.46 -2.37 16 24 N -0.94 -53.91 10.58 21.65 0.23 -53.68 16 25 Si 0.97 45.03 29.55 68.60 2.03 47.06 16 26 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 28 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 29 C 0.13 5.81 6.20 86.73 0.54 6.35 16 30 H 0.08 2.19 7.10 -2.39 -0.02 2.18 16 31 H 0.06 2.57 5.60 -2.39 -0.01 2.56 16 32 H 0.10 2.76 4.69 -2.39 -0.01 2.75 16 33 H 0.16 3.35 4.91 -2.91 -0.01 3.33 16 34 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.08 1.48 7.86 -2.39 -0.02 1.46 16 37 H 0.12 1.85 7.93 -2.38 -0.02 1.83 16 38 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.05 0.62 8.07 -2.39 -0.02 0.60 16 42 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 45 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 46 H 0.04 1.91 6.95 -2.39 -0.02 1.89 16 47 H 0.03 1.42 5.41 -2.39 -0.01 1.41 16 48 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 49 H 0.03 1.44 8.14 -2.39 -0.02 1.43 16 50 H 0.02 0.85 8.04 -2.39 -0.02 0.83 16 Total: -1.00 -74.81 385.31 4.28 -70.53 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.95 Total: 16.39 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 6.40 Total: 14.45 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -4.15 Total: -111.26 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.94 Total: -37.16 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -74.81 4.28 -70.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033717593.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.332 kcal (2) G-P(sol) polarization free energy of solvation -74.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds