Wall clock time and date at job start Sat Apr 11 2020 07:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46698 * 2 1 4 4 C 1.47197 * 109.47477 * 120.00004 * 2 1 3 5 5 C 2.64600 * 109.47478 * 120.00125 * 2 1 3 6 6 C 4.07796 * 109.47437 * 120.00060 * 2 1 3 7 7 O 1.21620 * 119.99923 * 69.72240 * 6 5 4 8 8 N 1.34770 * 120.00240 * 249.72394 * 6 5 4 9 9 C 1.46505 * 119.99920 * 0.02562 * 8 6 5 10 10 C 1.46507 * 120.00200 * 180.02562 * 8 6 5 11 11 C 1.52998 * 109.47072 * 90.00252 * 10 8 6 12 12 N 1.46896 * 109.47008 * 180.02562 * 11 10 8 13 13 C 1.46896 * 111.00173 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47411 * 179.97438 * 13 12 11 15 15 C 1.38299 * 119.92643 * 269.72526 * 14 13 12 16 16 C 1.38109 * 120.06519 * 179.72276 * 15 14 13 17 17 C 1.38880 * 119.92869 * 0.56641 * 16 15 14 18 18 O 1.35746 * 120.06809 * 179.68071 * 17 16 15 19 19 C 1.34831 * 116.99929 * 174.49287 * 18 17 16 20 20 H 1.07990 * 120.00367 * 5.05416 * 19 18 17 21 21 C 1.38657 * 119.99564 * 185.05913 * 19 18 17 22 22 N 1.31554 * 120.00347 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99778 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46738 * 359.97438 * 23 21 19 25 25 H 1.48489 * 109.47227 * 119.99730 * 23 21 19 26 26 H 1.48491 * 109.47003 * 240.00105 * 23 21 19 27 27 C 1.38880 * 119.86229 * 359.71062 * 17 16 15 28 28 C 1.38094 * 119.93221 * 359.97438 * 27 17 16 29 29 H 1.09001 * 109.47099 * 299.99768 * 1 2 3 30 30 H 1.08992 * 109.47058 * 60.00094 * 1 2 3 31 31 H 1.09004 * 109.46809 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47476 * 240.00551 * 2 1 3 33 33 H 1.09001 * 109.47156 * 60.00267 * 3 2 1 34 34 H 1.09003 * 109.46968 * 180.02562 * 3 2 1 35 35 H 1.08992 * 109.47289 * 299.99764 * 3 2 1 36 36 H 1.09000 * 109.46500 * 269.99985 * 9 8 6 37 37 H 1.08998 * 109.46977 * 29.99520 * 9 8 6 38 38 H 1.08998 * 109.47193 * 149.99889 * 9 8 6 39 39 H 1.09000 * 109.46774 * 329.99871 * 10 8 6 40 40 H 1.09003 * 109.46983 * 209.99820 * 10 8 6 41 41 H 1.08991 * 109.47502 * 60.00002 * 11 10 8 42 42 H 1.09003 * 109.46864 * 299.99641 * 11 10 8 43 43 H 1.00900 * 111.00166 * 56.03938 * 12 11 10 44 44 H 1.08999 * 109.47001 * 299.99726 * 13 12 11 45 45 H 1.08995 * 109.47623 * 59.99616 * 13 12 11 46 46 H 1.07996 * 119.97034 * 359.97438 * 15 14 13 47 47 H 1.08001 * 120.03309 * 180.27484 * 16 15 14 48 48 H 0.97005 * 119.99919 * 179.97438 * 22 21 19 49 49 H 1.08000 * 120.03494 * 179.97438 * 27 17 16 50 50 H 1.08002 * 119.96924 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0207 -0.6939 1.2018 5 6 2.4121 -1.2474 2.1604 6 6 2.8895 -1.9224 3.3296 7 8 3.2600 -3.0784 3.2556 8 7 2.9282 -1.2767 4.5119 9 6 2.4814 0.1157 4.6011 10 6 3.4172 -1.9671 5.7080 11 6 4.9276 -1.7588 5.8355 12 7 5.4179 -2.4516 7.0344 13 6 6.8678 -2.2738 7.1893 14 6 7.3332 -2.9962 8.4272 15 6 7.3610 -2.3359 9.6421 16 6 7.7816 -2.9969 10.7794 17 6 8.1880 -4.3225 10.7001 18 8 8.6081 -4.9730 11.8151 19 6 8.8795 -6.2878 11.6909 20 1 8.8384 -6.7584 10.7198 21 6 9.2114 -7.0358 12.8103 22 7 9.2618 -6.4626 13.9933 23 14 9.5868 -8.8577 12.6385 24 1 9.4612 -9.2567 11.2136 25 1 10.9702 -9.1244 13.1076 26 1 8.6268 -9.6403 13.4576 27 6 8.1644 -4.9811 9.4776 28 6 7.7366 -4.3166 8.3451 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 3.3254 0.7805 4.4174 37 1 1.7070 0.2972 3.8558 38 1 2.0794 0.3053 5.5964 39 1 3.2030 -3.0327 5.6254 40 1 2.9191 -1.5636 6.5896 41 1 5.1417 -0.6934 5.9180 42 1 5.4256 -2.1624 4.9539 43 1 5.1744 -3.4305 7.0114 44 1 7.3790 -2.6808 6.3169 45 1 7.0959 -1.2119 7.2814 46 1 7.0496 -1.3035 9.7022 47 1 7.7988 -2.4820 11.7287 48 1 9.4937 -6.9860 14.7764 49 1 8.4802 -6.0118 9.4126 50 1 7.7176 -4.8282 7.3942 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663920084.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:16:47 Heat of formation + Delta-G solvation = 9.793743 kcal Electronic energy + Delta-G solvation = -27527.403618 eV Core-core repulsion = 23521.718917 eV Total energy + Delta-G solvation = -4005.684702 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.24965 -39.05209 -37.26156 -36.93962 -36.32742 -35.07846 -32.58329 -32.26110 -30.70437 -30.12379 -28.38965 -27.83086 -27.10443 -25.60998 -24.69962 -23.53234 -22.49120 -21.91164 -21.08085 -20.32948 -18.40665 -17.95965 -17.05708 -16.86646 -16.55408 -16.15283 -15.50190 -15.29607 -14.91346 -14.74766 -14.50892 -14.37695 -14.15443 -13.76166 -13.69034 -13.53660 -13.48154 -13.34064 -12.90882 -12.88415 -12.67268 -12.62504 -12.47833 -12.28713 -12.09157 -12.02762 -11.88361 -11.60103 -11.24903 -11.23766 -10.91098 -10.79359 -10.75582 -10.60177 -10.56960 -10.45427 -10.39846 -9.30715 -9.15426 -8.82594 -8.41008 -8.13957 -7.16211 -6.43594 -4.02287 1.16162 1.84596 2.25691 2.29181 2.56732 3.13075 3.13789 3.15414 3.20800 3.51050 3.98239 4.28314 4.31982 4.43168 4.47192 4.63324 4.73049 4.75199 4.85167 4.94912 4.98061 5.06261 5.11945 5.15895 5.21311 5.25084 5.30221 5.31556 5.34909 5.38438 5.44785 5.55813 5.57259 5.64338 5.73318 5.79167 5.83567 5.91940 6.05926 6.24481 6.45676 6.73474 6.78956 6.85577 6.91808 7.00677 7.09243 7.29283 7.35293 7.45410 7.48772 7.67542 7.85857 8.01787 9.02359 9.72739 10.74537 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026059 B = 0.001388 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.230342 B =20172.386260 C =20748.126919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.007 3.993 3 C -0.146 4.146 4 C -0.076 4.076 5 C -0.219 4.219 6 C 0.630 3.370 7 O -0.519 6.519 8 N -0.604 5.604 9 C 0.079 3.921 10 C 0.118 3.882 11 C 0.044 3.956 12 N -0.682 5.682 13 C 0.120 3.880 14 C -0.186 4.186 15 C -0.052 4.052 16 C -0.195 4.195 17 C 0.156 3.844 18 O -0.179 6.179 19 C -0.391 4.391 20 H 0.092 0.908 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.234 4.234 28 C -0.065 4.065 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.031 0.969 43 H 0.344 0.656 44 H 0.028 0.972 45 H 0.070 0.930 46 H 0.111 0.889 47 H 0.116 0.884 48 H 0.269 0.731 49 H 0.126 0.874 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.428 16.718 -25.552 34.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.011 4.011 3 C -0.203 4.203 4 C -0.078 4.078 5 C -0.222 4.222 6 C 0.419 3.581 7 O -0.396 6.396 8 N -0.337 5.337 9 C -0.064 4.064 10 C -0.004 4.004 11 C -0.087 4.087 12 N -0.314 5.314 13 C -0.008 4.008 14 C -0.187 4.187 15 C -0.071 4.071 16 C -0.214 4.214 17 C 0.102 3.898 18 O -0.082 6.082 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.201 1.201 27 C -0.253 4.253 28 C -0.084 4.084 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.050 0.950 43 H 0.163 0.837 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.129 0.871 47 H 0.134 0.866 48 H 0.079 0.921 49 H 0.144 0.856 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.289 16.628 -24.656 33.908 hybrid contribution 0.581 -1.495 -0.778 1.783 sum -15.708 15.133 -25.434 33.505 Atomic orbital electron populations 1.21842 0.92610 1.02933 1.02948 1.18527 0.96342 0.95282 0.90934 1.21849 1.01802 0.93735 1.02959 1.22636 0.93695 0.96421 0.95084 1.20623 1.04192 1.00607 0.96805 1.14800 0.77903 0.84807 0.80623 1.90882 1.47573 1.16243 1.84894 1.47629 1.63866 1.13917 1.08299 1.21854 1.00031 0.81053 1.03490 1.21537 0.94333 0.98903 0.85678 1.22257 0.94580 0.99845 0.92015 1.60532 1.14573 1.18382 1.37931 1.20597 0.86093 0.99520 0.94563 1.19101 1.10034 0.95070 0.94505 1.20456 0.96926 0.98326 0.91343 1.20223 1.08795 0.93524 0.98856 1.19408 0.91171 0.92013 0.87187 1.83978 1.71784 1.23436 1.28990 1.21378 1.48092 0.81553 0.95743 0.89026 1.25283 0.96780 1.00214 0.94213 1.70049 1.44664 1.36531 0.98523 0.85654 0.78348 0.80660 0.78815 1.19105 1.20159 1.20132 1.21122 1.10088 1.01543 0.92590 1.20606 0.97120 0.93571 0.97062 0.91928 0.91036 0.91912 0.88125 0.91900 0.91936 0.91072 0.92202 0.91055 0.90155 0.89454 0.88872 0.91018 0.95045 0.83750 0.95371 0.91164 0.87063 0.86561 0.92091 0.85629 0.87886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 9.15 37.16 0.34 -0.14 16 2 C 0.01 0.03 3.30 -93.41 -0.31 -0.28 16 3 C -0.15 -0.45 9.15 37.16 0.34 -0.11 16 4 C -0.08 -0.60 12.56 -37.12 -0.47 -1.06 16 5 C -0.22 -2.23 11.70 -38.84 -0.45 -2.68 16 6 C 0.63 7.56 7.53 -14.34 -0.11 7.45 16 7 O -0.52 -8.19 16.66 5.26 0.09 -8.11 16 8 N -0.60 -5.62 2.87 -184.46 -0.53 -6.15 16 9 C 0.08 0.45 10.29 59.85 0.62 1.07 16 10 C 0.12 1.14 5.71 -4.04 -0.02 1.12 16 11 C 0.04 0.47 6.01 -3.83 -0.02 0.45 16 12 N -0.68 -8.65 6.49 -115.07 -0.75 -9.39 16 13 C 0.12 1.66 5.81 -4.98 -0.03 1.63 16 14 C -0.19 -3.20 5.40 -104.57 -0.56 -3.76 16 15 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 16 C -0.19 -4.17 9.99 -39.39 -0.39 -4.56 16 17 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 18 O -0.18 -5.16 9.76 0.06 0.00 -5.16 16 19 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16 20 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 23 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 C -0.23 -5.16 9.17 -39.40 -0.36 -5.53 16 28 C -0.06 -1.20 9.69 -39.61 -0.38 -1.59 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.37 6.89 -51.93 -0.36 0.01 16 38 H 0.08 0.35 7.89 -51.93 -0.41 -0.06 16 39 H 0.09 0.97 7.42 -51.93 -0.39 0.59 16 40 H 0.09 0.77 7.89 -51.93 -0.41 0.36 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.34 4.49 8.72 -39.29 -0.34 4.15 16 44 H 0.03 0.38 8.08 -51.93 -0.42 -0.04 16 45 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 46 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 47 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 48 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 50 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 426.83 15.07 6.43 6.43 Total: -1.00 -33.81 426.83 -9.23 -43.04 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.95 Total: 3.85 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -2.27 Total: -15.52 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: -0.52 Total: -40.27 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -33.81 -9.23 -43.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663920084.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.832 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds