Wall clock time and date at job start Sat Apr 11 2020 07:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46698 * 2 1 4 4 C 1.47197 * 109.47477 * 120.00004 * 2 1 3 5 5 C 2.64600 * 109.47478 * 120.00125 * 2 1 3 6 6 C 4.07796 * 109.47437 * 120.00060 * 2 1 3 7 7 O 1.21620 * 119.99923 * 69.72240 * 6 5 4 8 8 N 1.34770 * 120.00240 * 249.72394 * 6 5 4 9 9 C 1.46505 * 119.99920 * 0.02562 * 8 6 5 10 10 C 1.46507 * 120.00200 * 180.02562 * 8 6 5 11 11 C 1.52998 * 109.47072 * 90.00252 * 10 8 6 12 12 N 1.46896 * 109.47008 * 180.02562 * 11 10 8 13 13 C 1.46896 * 111.00173 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47411 * 179.97438 * 13 12 11 15 15 C 1.38299 * 119.92643 * 269.72526 * 14 13 12 16 16 C 1.38109 * 120.06519 * 179.72276 * 15 14 13 17 17 C 1.38880 * 119.92869 * 0.56641 * 16 15 14 18 18 O 1.35746 * 120.06809 * 179.68071 * 17 16 15 19 19 C 1.34831 * 116.99929 * 174.49287 * 18 17 16 20 20 H 1.07990 * 120.00367 * 5.05416 * 19 18 17 21 21 C 1.38657 * 119.99564 * 185.05913 * 19 18 17 22 22 N 1.31554 * 120.00347 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99778 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46738 * 359.97438 * 23 21 19 25 25 H 1.48489 * 109.47227 * 119.99730 * 23 21 19 26 26 H 1.48491 * 109.47003 * 240.00105 * 23 21 19 27 27 C 1.38880 * 119.86229 * 359.71062 * 17 16 15 28 28 C 1.38094 * 119.93221 * 359.97438 * 27 17 16 29 29 H 1.09001 * 109.47099 * 299.99768 * 1 2 3 30 30 H 1.08992 * 109.47058 * 60.00094 * 1 2 3 31 31 H 1.09004 * 109.46809 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47476 * 240.00551 * 2 1 3 33 33 H 1.09001 * 109.47156 * 60.00267 * 3 2 1 34 34 H 1.09003 * 109.46968 * 180.02562 * 3 2 1 35 35 H 1.08992 * 109.47289 * 299.99764 * 3 2 1 36 36 H 1.09000 * 109.46500 * 269.99985 * 9 8 6 37 37 H 1.08998 * 109.46977 * 29.99520 * 9 8 6 38 38 H 1.08998 * 109.47193 * 149.99889 * 9 8 6 39 39 H 1.09000 * 109.46774 * 329.99871 * 10 8 6 40 40 H 1.09003 * 109.46983 * 209.99820 * 10 8 6 41 41 H 1.08991 * 109.47502 * 60.00002 * 11 10 8 42 42 H 1.09003 * 109.46864 * 299.99641 * 11 10 8 43 43 H 1.00900 * 111.00166 * 56.03938 * 12 11 10 44 44 H 1.08999 * 109.47001 * 299.99726 * 13 12 11 45 45 H 1.08995 * 109.47623 * 59.99616 * 13 12 11 46 46 H 1.07996 * 119.97034 * 359.97438 * 15 14 13 47 47 H 1.08001 * 120.03309 * 180.27484 * 16 15 14 48 48 H 0.97005 * 119.99919 * 179.97438 * 22 21 19 49 49 H 1.08000 * 120.03494 * 179.97438 * 27 17 16 50 50 H 1.08002 * 119.96924 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0207 -0.6939 1.2018 5 6 2.4121 -1.2474 2.1604 6 6 2.8895 -1.9224 3.3296 7 8 3.2600 -3.0784 3.2556 8 7 2.9282 -1.2767 4.5119 9 6 2.4814 0.1157 4.6011 10 6 3.4172 -1.9671 5.7080 11 6 4.9276 -1.7588 5.8355 12 7 5.4179 -2.4516 7.0344 13 6 6.8678 -2.2738 7.1893 14 6 7.3332 -2.9962 8.4272 15 6 7.3610 -2.3359 9.6421 16 6 7.7816 -2.9969 10.7794 17 6 8.1880 -4.3225 10.7001 18 8 8.6081 -4.9730 11.8151 19 6 8.8795 -6.2878 11.6909 20 1 8.8384 -6.7584 10.7198 21 6 9.2114 -7.0358 12.8103 22 7 9.2618 -6.4626 13.9933 23 14 9.5868 -8.8577 12.6385 24 1 9.4612 -9.2567 11.2136 25 1 10.9702 -9.1244 13.1076 26 1 8.6268 -9.6403 13.4576 27 6 8.1644 -4.9811 9.4776 28 6 7.7366 -4.3166 8.3451 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 3.3254 0.7805 4.4174 37 1 1.7070 0.2972 3.8558 38 1 2.0794 0.3053 5.5964 39 1 3.2030 -3.0327 5.6254 40 1 2.9191 -1.5636 6.5896 41 1 5.1417 -0.6934 5.9180 42 1 5.4256 -2.1624 4.9539 43 1 5.1744 -3.4305 7.0114 44 1 7.3790 -2.6808 6.3169 45 1 7.0959 -1.2119 7.2814 46 1 7.0496 -1.3035 9.7022 47 1 7.7988 -2.4820 11.7287 48 1 9.4937 -6.9860 14.7764 49 1 8.4802 -6.0118 9.4126 50 1 7.7176 -4.8282 7.3942 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663920084.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:16:46 Heat of formation + Delta-G solvation = -11.341165 kcal Electronic energy + Delta-G solvation = -27528.320097 eV Core-core repulsion = 23521.718917 eV Total energy + Delta-G solvation = -4006.601180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.09538 -40.78332 -38.74852 -37.47187 -37.34302 -36.14332 -34.30905 -33.19556 -31.93639 -31.73810 -29.52579 -28.05543 -27.79649 -27.44726 -25.84678 -24.45729 -23.61307 -23.19298 -22.04971 -21.60649 -19.84436 -19.12984 -18.85660 -17.74798 -17.27410 -16.92656 -16.58502 -16.37816 -16.18791 -15.93273 -15.83068 -15.52568 -15.38421 -15.20444 -14.79989 -14.54310 -14.41244 -14.30719 -14.14717 -13.89098 -13.72019 -13.46893 -13.22089 -13.08405 -13.01162 -12.97483 -12.78522 -12.45108 -12.41832 -12.33673 -12.32195 -12.13607 -12.08558 -11.99448 -11.64909 -11.37819 -11.17315 -11.12964 -10.80719 -9.91698 -9.77277 -9.45628 -8.90972 -8.47616 -6.15669 0.40484 0.61120 0.66950 1.18700 1.34460 1.42498 1.52566 1.83528 2.17164 2.37237 2.77895 2.92929 3.12508 3.51058 3.53088 3.85105 3.97916 4.03799 4.05519 4.11282 4.16065 4.17047 4.21092 4.22915 4.43829 4.47402 4.50487 4.59700 4.61944 4.71646 4.79568 4.80076 4.82662 4.84579 4.92682 4.93653 4.95198 5.09522 5.11867 5.15542 5.31234 5.31916 5.32479 5.35505 5.57681 5.71881 5.80855 5.99317 6.03051 6.09114 6.15979 6.24077 6.34972 6.84743 6.97376 7.78284 8.75841 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026059 B = 0.001388 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.230342 B =20172.386260 C =20748.126919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.002 3.998 3 C -0.144 4.144 4 C -0.042 4.042 5 C -0.269 4.269 6 C 0.625 3.375 7 O -0.573 6.573 8 N -0.597 5.597 9 C 0.074 3.926 10 C 0.120 3.880 11 C 0.054 3.946 12 N -0.684 5.684 13 C 0.124 3.876 14 C -0.159 4.159 15 C -0.044 4.044 16 C -0.204 4.204 17 C 0.114 3.886 18 O -0.233 6.233 19 C -0.414 4.414 20 H 0.100 0.900 21 C -0.021 4.021 22 N -0.920 5.920 23 Si 1.018 2.982 24 H -0.253 1.253 25 H -0.267 1.267 26 H -0.268 1.268 27 C -0.244 4.244 28 C -0.064 4.064 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.014 0.986 43 H 0.342 0.658 44 H 0.037 0.963 45 H 0.091 0.909 46 H 0.149 0.851 47 H 0.114 0.886 48 H 0.273 0.727 49 H 0.116 0.884 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.947 18.923 -28.771 38.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.016 4.016 3 C -0.201 4.201 4 C -0.045 4.045 5 C -0.272 4.272 6 C 0.415 3.585 7 O -0.454 6.454 8 N -0.328 5.328 9 C -0.068 4.068 10 C -0.002 4.002 11 C -0.076 4.076 12 N -0.315 5.315 13 C -0.004 4.004 14 C -0.160 4.160 15 C -0.062 4.062 16 C -0.224 4.224 17 C 0.064 3.936 18 O -0.140 6.140 19 C -0.490 4.490 20 H 0.117 0.883 21 C -0.219 4.219 22 N -0.558 5.558 23 Si 0.837 3.163 24 H -0.177 1.177 25 H -0.192 1.192 26 H -0.193 1.193 27 C -0.263 4.263 28 C -0.083 4.083 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.132 0.868 41 H 0.106 0.894 42 H 0.033 0.967 43 H 0.159 0.841 44 H 0.055 0.945 45 H 0.109 0.891 46 H 0.167 0.833 47 H 0.132 0.868 48 H 0.082 0.918 49 H 0.134 0.866 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.838 18.914 -27.912 38.145 hybrid contribution 0.884 -1.852 -0.083 2.054 sum -16.954 17.061 -27.995 36.909 Atomic orbital electron populations 1.21853 0.91509 1.02728 1.04051 1.18861 0.97151 0.95940 0.89601 1.21854 1.01444 0.92698 1.04072 1.23438 0.91496 0.94891 0.94653 1.20519 1.06451 1.02528 0.97710 1.15115 0.77327 0.84355 0.81744 1.90836 1.50303 1.18456 1.85829 1.47721 1.62677 1.15082 1.07329 1.22101 1.00760 0.78952 1.04956 1.21492 0.94030 0.98204 0.86524 1.22201 0.94820 1.00243 0.90365 1.60498 1.13605 1.18438 1.38976 1.20601 0.86869 1.00222 0.92747 1.19584 1.06408 0.94345 0.95666 1.20859 0.95249 0.99828 0.90275 1.20491 1.08894 0.92666 1.00314 1.19960 0.93034 0.93337 0.87279 1.83939 1.74796 1.23958 1.31263 1.21846 1.48556 0.82071 0.96522 0.88269 1.26559 0.96326 1.05470 0.93539 1.70187 1.47253 1.38784 0.99588 0.84543 0.78436 0.73835 0.79475 1.17672 1.19218 1.19284 1.21203 1.10629 1.01414 0.93033 1.20929 0.96023 0.94311 0.97010 0.91899 0.88920 0.92792 0.86868 0.91719 0.92512 0.89098 0.91049 0.90448 0.88146 0.91412 0.86842 0.89380 0.96737 0.84069 0.94493 0.89090 0.83338 0.86779 0.91826 0.86637 0.84990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.59 9.15 71.98 0.66 0.07 16 2 C 0.00 0.01 3.30 -12.60 -0.04 -0.03 16 3 C -0.14 -0.48 9.15 71.98 0.66 0.18 16 4 C -0.04 -0.61 12.56 31.12 0.39 -0.22 16 5 C -0.27 -5.36 11.70 30.01 0.35 -5.00 16 6 C 0.62 15.06 7.53 85.49 0.64 15.70 16 7 O -0.57 -18.79 16.66 -4.09 -0.07 -18.86 16 8 N -0.60 -10.33 2.87 -855.77 -2.46 -12.78 16 9 C 0.07 0.66 10.29 127.77 1.31 1.98 16 10 C 0.12 2.13 5.71 86.38 0.49 2.62 16 11 C 0.05 1.02 6.01 86.30 0.52 1.54 16 12 N -0.68 -15.19 6.49 -517.96 -3.36 -18.55 16 13 C 0.12 2.93 5.81 85.56 0.50 3.43 16 14 C -0.16 -5.00 5.40 -19.83 -0.11 -5.11 16 15 C -0.04 -1.48 9.69 22.25 0.22 -1.26 16 16 C -0.20 -8.82 9.99 22.39 0.22 -8.60 16 17 C 0.11 5.82 6.65 22.58 0.15 5.97 16 18 O -0.23 -14.32 9.76 -22.71 -0.22 -14.54 16 19 C -0.41 -24.63 9.49 67.92 0.64 -23.99 16 20 H 0.10 5.47 5.20 -2.92 -0.02 5.45 16 21 C -0.02 -1.24 5.49 84.83 0.47 -0.77 16 22 N -0.92 -57.19 13.67 21.61 0.30 -56.89 16 23 Si 1.02 43.76 29.55 68.60 2.03 45.79 16 24 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 C -0.24 -10.92 9.17 22.39 0.21 -10.71 16 28 C -0.06 -2.28 9.69 22.25 0.22 -2.06 16 29 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.08 0.62 6.89 -2.39 -0.02 0.61 16 38 H 0.10 0.52 7.89 -2.39 -0.02 0.50 16 39 H 0.07 1.50 7.42 -2.39 -0.02 1.48 16 40 H 0.11 1.56 7.89 -2.39 -0.02 1.54 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.34 8.11 8.72 -89.69 -0.78 7.33 16 44 H 0.04 0.85 8.08 -2.39 -0.02 0.83 16 45 H 0.09 1.87 8.08 -2.39 -0.02 1.85 16 46 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 47 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 48 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 49 H 0.12 5.32 5.64 -2.91 -0.02 5.30 16 50 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -80.12 426.83 3.87 -76.25 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.16 Total: 25.85 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 7.50 Total: -26.25 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -5.53 Total: -88.23 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.29 Total: -33.40 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -80.12 3.87 -76.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663920084.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.906 kcal (2) G-P(sol) polarization free energy of solvation -80.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds