Wall clock time and date at job start Sat Apr 11 2020 07:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47448 * 2 1 4 4 C 1.53001 * 109.47306 * 172.72853 * 3 2 1 5 5 C 1.52994 * 109.47209 * 294.72022 * 4 3 2 6 6 C 1.52995 * 109.46982 * 292.73191 * 3 2 1 7 7 N 1.46898 * 109.47586 * 65.45393 * 6 3 2 8 8 C 1.46899 * 111.00428 * 180.02562 * 7 6 3 9 9 C 1.53003 * 109.47189 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.50809 * 60.10122 * 9 8 7 11 11 C 1.53295 * 109.51496 * 180.24970 * 9 8 7 12 12 N 1.47151 * 108.38416 * 172.22551 * 11 9 8 13 13 C 1.34773 * 120.97571 * 129.49246 * 12 11 9 14 14 O 1.21283 * 120.00562 * 359.97188 * 13 12 11 15 15 C 1.50706 * 119.99567 * 179.97438 * 13 12 11 16 16 S 1.81001 * 109.47159 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00117 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99978 * 0.02562 * 17 16 15 19 19 C 1.38791 * 119.99914 * 179.97438 * 17 16 15 20 20 N 1.31630 * 120.00099 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00156 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47157 * 59.99657 * 21 19 17 23 23 H 1.48498 * 109.47503 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46848 * 300.00072 * 21 19 17 25 25 C 1.47149 * 118.03426 * 309.46621 * 12 11 9 26 26 C 1.53290 * 108.38415 * 50.53992 * 25 12 11 27 27 O 1.42956 * 109.22369 * 307.68895 * 26 25 12 28 28 H 1.08997 * 109.46812 * 69.21152 * 1 2 3 29 29 H 1.09002 * 109.46858 * 309.21551 * 1 2 3 30 30 H 1.08998 * 109.47036 * 189.21397 * 1 2 3 31 31 H 1.09002 * 109.47431 * 119.99983 * 2 1 3 32 32 H 1.09003 * 109.47593 * 239.99943 * 2 1 3 33 33 H 1.09001 * 109.46833 * 52.72924 * 3 2 1 34 34 H 1.09001 * 109.46580 * 54.72149 * 4 3 2 35 35 H 1.08999 * 109.47192 * 174.71807 * 4 3 2 36 36 H 1.08996 * 109.47268 * 187.50175 * 5 4 3 37 37 H 1.08994 * 109.47317 * 307.50359 * 5 4 3 38 38 H 1.09000 * 109.46989 * 67.50622 * 5 4 3 39 39 H 1.09000 * 109.47486 * 185.45036 * 6 3 2 40 40 H 1.08997 * 109.47263 * 305.45189 * 6 3 2 41 41 H 1.00904 * 111.00211 * 56.04038 * 7 6 3 42 42 H 1.09002 * 109.46966 * 299.99321 * 8 7 6 43 43 H 1.08994 * 109.47042 * 60.00332 * 8 7 6 44 44 H 1.09002 * 109.68117 * 291.95308 * 11 9 8 45 45 H 1.09003 * 109.67737 * 52.50178 * 11 9 8 46 46 H 1.09001 * 109.47268 * 299.99818 * 15 13 12 47 47 H 1.09000 * 109.47109 * 59.99544 * 15 13 12 48 48 H 0.97010 * 119.99864 * 180.02562 * 20 19 17 49 49 H 1.08997 * 109.68439 * 290.81008 * 25 12 11 50 50 H 1.09006 * 109.67386 * 170.26130 * 25 12 11 51 51 H 1.09002 * 109.50950 * 187.77195 * 26 25 12 52 52 H 1.08997 * 109.51629 * 67.62011 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5591 1.4463 0.1826 5 6 3.9076 0.9002 1.5686 6 6 1.6846 2.1091 -1.3304 7 7 0.2246 2.2232 -1.4464 8 6 -0.1547 2.8596 -2.7148 9 6 -1.6791 2.9600 -2.7993 10 1 -2.0509 3.5597 -1.9685 11 6 -2.0763 3.6184 -4.1254 12 7 -3.5386 3.5336 -4.2660 13 6 -4.2712 4.6249 -4.5638 14 8 -3.7264 5.6972 -4.7196 15 6 -5.7676 4.5127 -4.7032 16 16 -6.4599 6.1368 -5.1025 17 6 -8.1696 5.7237 -5.2057 18 1 -8.4905 4.7063 -5.0370 19 6 -9.1041 6.7059 -5.5027 20 7 -8.7131 7.9459 -5.7077 21 14 -10.9169 6.2682 -5.6113 22 1 -11.3731 5.7212 -4.3083 23 1 -11.7015 7.4858 -5.9384 24 1 -11.1173 5.2495 -6.6732 25 6 -4.1771 2.2221 -4.0725 26 6 -3.6776 1.6318 -2.7489 27 8 -2.2482 1.6501 -2.7350 28 1 -0.3633 0.3647 -0.9607 29 1 -0.3633 0.6498 0.7962 30 1 -0.3633 -1.0144 0.1645 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.5744 1.9925 0.8178 34 1 4.0184 0.8188 -0.5813 35 1 3.9338 2.4656 0.0889 36 1 4.9748 1.0259 1.7509 37 1 3.3431 1.4441 2.3259 38 1 3.6532 -0.1586 1.6164 39 1 2.1308 3.1028 -1.3696 40 1 2.0683 1.5058 -2.1531 41 1 -0.1626 2.7235 -0.6604 42 1 0.2788 3.8585 -2.7640 43 1 0.2162 2.2611 -3.5468 44 1 -1.7676 4.6638 -4.1232 45 1 -1.5969 3.0954 -4.9529 46 1 -6.0065 3.8094 -5.5010 47 1 -6.1942 4.1569 -3.7654 48 1 -9.3664 8.6325 -5.9149 49 1 -3.9093 1.5585 -4.8947 50 1 -5.2598 2.3429 -4.0353 51 1 -4.0294 0.6046 -2.6526 52 1 -4.0575 2.2269 -1.9185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700145318.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:16:55 Heat of formation + Delta-G solvation = -91.223746 kcal Electronic energy + Delta-G solvation = -28124.180723 eV Core-core repulsion = 24249.559526 eV Total energy + Delta-G solvation = -3874.621198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.24944 -38.62180 -37.99629 -35.34012 -34.51494 -32.45698 -32.31636 -31.56485 -29.57931 -28.84449 -27.45630 -25.59924 -25.04828 -23.47634 -22.92974 -22.61917 -21.55574 -20.18294 -19.25373 -17.76770 -17.07478 -16.78376 -16.08336 -15.95786 -15.67958 -15.40549 -15.13482 -14.87663 -14.82802 -14.65718 -14.50669 -14.01940 -13.81798 -13.54109 -13.33176 -13.24334 -12.84572 -12.71813 -12.58583 -12.41722 -12.23407 -12.04992 -11.92307 -11.72727 -11.66306 -11.39469 -11.28895 -11.07038 -11.05895 -10.94667 -10.80547 -10.76434 -10.61795 -10.55858 -10.15983 -9.84789 -9.43600 -9.08561 -8.52033 -8.46732 -8.27321 -6.53976 -6.24142 -3.95505 2.78142 2.96568 3.21700 3.22303 3.27121 3.49548 3.54465 3.76358 4.17554 4.43057 4.51337 4.57268 4.67755 4.72294 4.77130 4.87020 4.91010 4.97908 5.05329 5.11030 5.12730 5.17344 5.21327 5.22793 5.32582 5.33475 5.39215 5.40829 5.47597 5.54431 5.57644 5.62586 5.63833 5.66182 5.71864 5.74290 5.80683 5.84996 5.93553 5.99568 6.04854 6.05715 6.21770 6.44955 6.63881 6.73138 6.97743 7.09778 7.44383 7.56500 8.32093 8.46281 9.20957 10.83171 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028139 B = 0.001757 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.831338 B =15935.443822 C =16356.503641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.107 4.107 3 C -0.087 4.087 4 C -0.120 4.120 5 C -0.152 4.152 6 C 0.063 3.937 7 N -0.670 5.670 8 C 0.066 3.934 9 C 0.083 3.917 10 H 0.061 0.939 11 C 0.086 3.914 12 N -0.623 5.623 13 C 0.537 3.463 14 O -0.516 6.516 15 C -0.151 4.151 16 S -0.060 6.060 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.073 3.927 26 C 0.048 3.952 27 O -0.358 6.358 28 H 0.106 0.894 29 H 0.040 0.960 30 H 0.033 0.967 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.340 0.660 42 H 0.048 0.952 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.269 0.731 49 H 0.075 0.925 50 H 0.098 0.902 51 H 0.105 0.895 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.520 -17.132 11.221 29.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.145 4.145 3 C -0.106 4.106 4 C -0.158 4.158 5 C -0.209 4.209 6 C -0.066 4.066 7 N -0.301 5.301 8 C -0.064 4.064 9 C 0.023 3.977 10 H 0.079 0.921 11 C -0.038 4.038 12 N -0.360 5.360 13 C 0.325 3.675 14 O -0.390 6.390 15 C -0.301 4.301 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.051 4.051 26 C -0.030 4.030 27 O -0.277 6.277 28 H 0.125 0.875 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.091 0.909 41 H 0.158 0.842 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.118 0.882 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.079 0.921 49 H 0.094 0.906 50 H 0.116 0.884 51 H 0.123 0.877 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 22.298 -16.126 10.696 29.524 hybrid contribution -1.781 -0.414 0.271 1.849 sum 20.517 -16.541 10.967 28.545 Atomic orbital electron populations 1.22084 0.94698 0.99715 1.05284 1.21467 0.97256 0.94942 1.00822 1.21281 0.95034 0.97350 0.96893 1.21535 0.95473 1.01122 0.97661 1.21796 1.00954 1.01317 0.96861 1.22051 0.87826 0.98656 0.98115 1.60660 1.10144 1.55440 1.03812 1.21938 0.92639 0.97906 0.93922 1.22445 0.93494 0.85126 0.96586 0.92101 1.22141 0.81127 1.03225 0.97288 1.48122 1.06662 1.08769 1.72470 1.20375 0.89080 0.82883 0.75177 1.90693 1.72804 1.26897 1.48558 1.23552 0.93450 1.08322 1.04784 1.85409 1.03972 1.02423 1.91520 1.22814 0.91759 0.97862 1.56069 0.90958 1.24987 0.99576 0.94436 0.94505 1.70009 1.34961 1.00845 1.44429 0.86222 0.82527 0.77985 0.78752 1.19927 1.20783 1.19907 1.22442 0.99441 0.84579 0.98626 1.22965 0.81885 1.02123 0.96030 1.88040 1.18713 1.26367 1.94534 0.87528 0.94128 0.94823 0.93045 0.92614 0.91367 0.91932 0.92219 0.92963 0.92786 0.92476 0.95413 0.90913 0.84190 0.93441 0.89889 0.88227 0.90959 0.89164 0.89248 0.92098 0.90644 0.88416 0.87667 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 8.97 37.16 0.33 -1.00 16 2 C -0.11 -0.77 5.29 -26.73 -0.14 -0.91 16 3 C -0.09 -0.55 2.11 -90.62 -0.19 -0.74 16 4 C -0.12 -0.68 5.40 -26.73 -0.14 -0.82 16 5 C -0.15 -0.82 9.50 37.15 0.35 -0.47 16 6 C 0.06 0.42 5.06 -3.83 -0.02 0.40 16 7 N -0.67 -5.05 3.00 -113.79 -0.34 -5.39 16 8 C 0.07 0.53 5.38 -3.82 -0.02 0.51 16 9 C 0.08 0.83 2.99 -26.58 -0.08 0.75 16 10 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 11 C 0.09 1.04 5.93 -3.53 -0.02 1.02 16 12 N -0.62 -8.89 3.02 -172.28 -0.52 -9.41 16 13 C 0.54 10.17 7.73 -10.98 -0.08 10.08 16 14 O -0.52 -11.69 15.33 5.55 0.09 -11.61 16 15 C -0.15 -3.03 4.53 36.01 0.16 -2.87 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 17 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 18 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 21 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.07 0.80 6.54 -3.54 -0.02 0.77 16 26 C 0.05 0.46 6.98 37.31 0.26 0.72 16 27 O -0.36 -3.80 10.25 -35.23 -0.36 -4.16 16 28 H 0.11 1.03 5.79 -51.93 -0.30 0.73 16 29 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.36 6.43 -51.93 -0.33 0.02 16 32 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 33 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.05 0.30 8.13 -51.93 -0.42 -0.13 16 38 H 0.06 0.31 6.79 -51.93 -0.35 -0.04 16 39 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.34 2.51 8.73 -39.29 -0.34 2.17 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 1.34 7.08 -51.93 -0.37 0.97 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 1.68 8.02 -51.92 -0.42 1.27 16 47 H 0.09 1.65 7.66 -51.92 -0.40 1.25 16 48 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.10 1.05 6.05 -51.93 -0.31 0.73 16 51 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 418.59 15.07 6.31 6.31 Total: -1.00 -33.18 418.59 -10.30 -43.48 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -9.55 Total: -0.90 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 0.58 Total: -5.41 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: -0.13 Total: -40.06 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.28 Total: -15.77 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.18 -10.30 -43.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700145318.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.746 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds