Wall clock time and date at job start Sat Apr 11 2020 07:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47448 * 2 1 4 4 C 1.53001 * 109.47306 * 172.72853 * 3 2 1 5 5 C 1.52994 * 109.47209 * 294.72022 * 4 3 2 6 6 C 1.52995 * 109.46982 * 292.73191 * 3 2 1 7 7 N 1.46898 * 109.47586 * 65.45393 * 6 3 2 8 8 C 1.46899 * 111.00428 * 180.02562 * 7 6 3 9 9 C 1.53003 * 109.47189 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.50809 * 60.10122 * 9 8 7 11 11 C 1.53295 * 109.51496 * 180.24970 * 9 8 7 12 12 N 1.47151 * 108.38416 * 172.22551 * 11 9 8 13 13 C 1.34773 * 120.97571 * 129.49246 * 12 11 9 14 14 O 1.21283 * 120.00562 * 359.97188 * 13 12 11 15 15 C 1.50706 * 119.99567 * 179.97438 * 13 12 11 16 16 S 1.81001 * 109.47159 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00117 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99978 * 0.02562 * 17 16 15 19 19 C 1.38791 * 119.99914 * 179.97438 * 17 16 15 20 20 N 1.31630 * 120.00099 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00156 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47157 * 59.99657 * 21 19 17 23 23 H 1.48498 * 109.47503 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46848 * 300.00072 * 21 19 17 25 25 C 1.47149 * 118.03426 * 309.46621 * 12 11 9 26 26 C 1.53290 * 108.38415 * 50.53992 * 25 12 11 27 27 O 1.42956 * 109.22369 * 307.68895 * 26 25 12 28 28 H 1.08997 * 109.46812 * 69.21152 * 1 2 3 29 29 H 1.09002 * 109.46858 * 309.21551 * 1 2 3 30 30 H 1.08998 * 109.47036 * 189.21397 * 1 2 3 31 31 H 1.09002 * 109.47431 * 119.99983 * 2 1 3 32 32 H 1.09003 * 109.47593 * 239.99943 * 2 1 3 33 33 H 1.09001 * 109.46833 * 52.72924 * 3 2 1 34 34 H 1.09001 * 109.46580 * 54.72149 * 4 3 2 35 35 H 1.08999 * 109.47192 * 174.71807 * 4 3 2 36 36 H 1.08996 * 109.47268 * 187.50175 * 5 4 3 37 37 H 1.08994 * 109.47317 * 307.50359 * 5 4 3 38 38 H 1.09000 * 109.46989 * 67.50622 * 5 4 3 39 39 H 1.09000 * 109.47486 * 185.45036 * 6 3 2 40 40 H 1.08997 * 109.47263 * 305.45189 * 6 3 2 41 41 H 1.00904 * 111.00211 * 56.04038 * 7 6 3 42 42 H 1.09002 * 109.46966 * 299.99321 * 8 7 6 43 43 H 1.08994 * 109.47042 * 60.00332 * 8 7 6 44 44 H 1.09002 * 109.68117 * 291.95308 * 11 9 8 45 45 H 1.09003 * 109.67737 * 52.50178 * 11 9 8 46 46 H 1.09001 * 109.47268 * 299.99818 * 15 13 12 47 47 H 1.09000 * 109.47109 * 59.99544 * 15 13 12 48 48 H 0.97010 * 119.99864 * 180.02562 * 20 19 17 49 49 H 1.08997 * 109.68439 * 290.81008 * 25 12 11 50 50 H 1.09006 * 109.67386 * 170.26130 * 25 12 11 51 51 H 1.09002 * 109.50950 * 187.77195 * 26 25 12 52 52 H 1.08997 * 109.51629 * 67.62011 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5591 1.4463 0.1826 5 6 3.9076 0.9002 1.5686 6 6 1.6846 2.1091 -1.3304 7 7 0.2246 2.2232 -1.4464 8 6 -0.1547 2.8596 -2.7148 9 6 -1.6791 2.9600 -2.7993 10 1 -2.0509 3.5597 -1.9685 11 6 -2.0763 3.6184 -4.1254 12 7 -3.5386 3.5336 -4.2660 13 6 -4.2712 4.6249 -4.5638 14 8 -3.7264 5.6972 -4.7196 15 6 -5.7676 4.5127 -4.7032 16 16 -6.4599 6.1368 -5.1025 17 6 -8.1696 5.7237 -5.2057 18 1 -8.4905 4.7063 -5.0370 19 6 -9.1041 6.7059 -5.5027 20 7 -8.7131 7.9459 -5.7077 21 14 -10.9169 6.2682 -5.6113 22 1 -11.3731 5.7212 -4.3083 23 1 -11.7015 7.4858 -5.9384 24 1 -11.1173 5.2495 -6.6732 25 6 -4.1771 2.2221 -4.0725 26 6 -3.6776 1.6318 -2.7489 27 8 -2.2482 1.6501 -2.7350 28 1 -0.3633 0.3647 -0.9607 29 1 -0.3633 0.6498 0.7962 30 1 -0.3633 -1.0144 0.1645 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.5744 1.9925 0.8178 34 1 4.0184 0.8188 -0.5813 35 1 3.9338 2.4656 0.0889 36 1 4.9748 1.0259 1.7509 37 1 3.3431 1.4441 2.3259 38 1 3.6532 -0.1586 1.6164 39 1 2.1308 3.1028 -1.3696 40 1 2.0683 1.5058 -2.1531 41 1 -0.1626 2.7235 -0.6604 42 1 0.2788 3.8585 -2.7640 43 1 0.2162 2.2611 -3.5468 44 1 -1.7676 4.6638 -4.1232 45 1 -1.5969 3.0954 -4.9529 46 1 -6.0065 3.8094 -5.5010 47 1 -6.1942 4.1569 -3.7654 48 1 -9.3664 8.6325 -5.9149 49 1 -3.9093 1.5585 -4.8947 50 1 -5.2598 2.3429 -4.0353 51 1 -4.0294 0.6046 -2.6526 52 1 -4.0575 2.2269 -1.9185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700145318.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:16:54 Heat of formation + Delta-G solvation = -111.549229 kcal Electronic energy + Delta-G solvation = -28125.062102 eV Core-core repulsion = 24249.559526 eV Total energy + Delta-G solvation = -3875.502577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.38806 -39.58229 -38.81355 -36.13442 -35.54621 -34.59313 -33.08304 -32.22077 -31.00531 -29.58919 -28.34281 -27.66013 -25.98926 -24.31659 -23.56369 -23.19150 -22.43368 -20.73981 -20.61828 -19.58087 -18.31407 -17.79593 -17.14814 -16.89248 -16.87328 -16.49884 -16.31870 -16.13829 -15.82854 -15.51467 -15.35308 -15.18002 -14.76987 -14.63926 -14.49222 -14.33622 -13.82196 -13.61027 -13.49764 -13.35980 -13.19818 -13.16087 -12.87799 -12.83390 -12.72917 -12.62254 -12.44048 -12.22203 -12.14371 -11.85232 -11.75782 -11.66090 -11.44660 -11.23580 -11.13830 -11.12185 -11.11155 -10.88874 -10.29364 -9.63151 -9.08191 -8.69352 -8.35270 -6.14347 1.21445 1.43602 1.43910 1.48469 1.54169 1.95970 2.26439 2.74580 2.99013 3.09781 3.21018 3.62289 3.78581 3.88554 3.95583 3.99430 4.02397 4.06583 4.15444 4.21918 4.27164 4.34645 4.41669 4.45256 4.47519 4.59788 4.62068 4.65483 4.71453 4.75772 4.77948 4.82094 4.87294 4.88143 4.99853 5.06488 5.13493 5.18324 5.22496 5.35189 5.39774 5.40723 5.43410 5.50604 5.63772 5.98495 6.06971 6.15216 6.18993 6.22318 6.46331 7.03325 7.05888 8.73645 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028139 B = 0.001757 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.831338 B =15935.443822 C =16356.503641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 C -0.081 4.081 4 C -0.118 4.118 5 C -0.152 4.152 6 C 0.066 3.934 7 N -0.672 5.672 8 C 0.072 3.928 9 C 0.093 3.907 10 H 0.053 0.947 11 C 0.083 3.917 12 N -0.612 5.612 13 C 0.535 3.465 14 O -0.564 6.564 15 C -0.124 4.124 16 S -0.151 6.151 17 C -0.547 4.547 18 H 0.084 0.916 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.261 1.261 23 H -0.279 1.279 24 H -0.262 1.262 25 C 0.066 3.934 26 C 0.050 3.950 27 O -0.362 6.362 28 H 0.096 0.904 29 H 0.037 0.963 30 H 0.028 0.972 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.341 0.659 42 H 0.053 0.947 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.271 0.729 49 H 0.093 0.907 50 H 0.103 0.897 51 H 0.134 0.866 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.408 -19.759 11.877 31.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.142 4.142 3 C -0.100 4.100 4 C -0.156 4.156 5 C -0.209 4.209 6 C -0.063 4.063 7 N -0.303 5.303 8 C -0.058 4.058 9 C 0.034 3.966 10 H 0.071 0.929 11 C -0.040 4.040 12 N -0.347 5.347 13 C 0.323 3.677 14 O -0.442 6.442 15 C -0.275 4.275 16 S 0.076 5.924 17 C -0.695 4.695 18 H 0.102 0.898 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.205 1.205 24 H -0.186 1.186 25 C -0.056 4.056 26 C -0.027 4.027 27 O -0.280 6.280 28 H 0.114 0.886 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.159 0.841 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.080 0.920 49 H 0.111 0.889 50 H 0.121 0.879 51 H 0.151 0.849 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 22.214 -18.818 11.370 31.254 hybrid contribution -1.634 0.290 0.100 1.662 sum 20.580 -18.528 11.470 29.973 Atomic orbital electron populations 1.22013 0.95445 0.99275 1.04508 1.21432 0.96466 0.95468 1.00803 1.21221 0.95528 0.96692 0.96559 1.21514 0.94820 1.01354 0.97878 1.21791 1.01296 1.01195 0.96608 1.22031 0.87211 0.98820 0.98216 1.60651 1.10747 1.55342 1.03535 1.21857 0.91145 0.98387 0.94367 1.22341 0.94707 0.84749 0.94815 0.92929 1.22313 0.79663 1.02793 0.99199 1.48121 1.07526 1.08760 1.70297 1.20171 0.88730 0.83411 0.75392 1.90676 1.73356 1.28974 1.51209 1.23365 0.94218 1.03746 1.06171 1.85598 1.05478 1.09103 1.92184 1.23166 0.91825 0.98534 1.55995 0.89775 1.26126 1.05052 0.94135 0.93725 1.70180 1.36781 1.02190 1.45589 0.85004 0.75619 0.77946 0.79429 1.18591 1.20452 1.18609 1.22766 0.99679 0.82902 1.00285 1.23078 0.81300 1.03576 0.94786 1.88053 1.19340 1.26300 1.94346 0.88567 0.94359 0.95245 0.92749 0.92915 0.91655 0.91777 0.91966 0.92440 0.92967 0.92554 0.95082 0.91081 0.84084 0.92870 0.89681 0.89929 0.89475 0.87324 0.87267 0.91984 0.88859 0.87923 0.84852 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.97 71.98 0.65 -1.74 16 2 C -0.10 -1.35 5.29 30.59 0.16 -1.19 16 3 C -0.08 -0.92 2.11 -10.79 -0.02 -0.94 16 4 C -0.12 -1.16 5.40 30.59 0.17 -0.99 16 5 C -0.15 -1.43 9.50 71.98 0.68 -0.74 16 6 C 0.07 0.79 5.06 86.30 0.44 1.23 16 7 N -0.67 -9.19 3.00 -513.91 -1.54 -10.73 16 8 C 0.07 1.07 5.38 86.30 0.46 1.53 16 9 C 0.09 1.75 2.99 30.69 0.09 1.84 16 10 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 11 C 0.08 1.95 5.93 86.35 0.51 2.46 16 12 N -0.61 -16.72 3.02 -817.35 -2.47 -19.19 16 13 C 0.53 20.25 7.73 87.66 0.68 20.93 16 14 O -0.56 -26.41 15.33 -3.04 -0.05 -26.45 16 15 C -0.12 -4.92 4.53 71.24 0.32 -4.60 16 16 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 17 C -0.55 -31.00 9.50 67.95 0.65 -30.35 16 18 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 19 C 0.01 0.82 5.49 84.86 0.47 1.28 16 20 N -0.91 -55.74 13.22 21.65 0.29 -55.46 16 21 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 25 C 0.07 1.27 6.54 86.35 0.56 1.83 16 26 C 0.05 0.81 6.98 72.08 0.50 1.32 16 27 O -0.36 -6.84 10.25 -148.98 -1.53 -8.37 16 28 H 0.10 1.71 5.79 -2.39 -0.01 1.70 16 29 H 0.04 0.59 8.08 -2.39 -0.02 0.57 16 30 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.68 6.43 -2.39 -0.02 0.66 16 32 H 0.05 0.72 8.13 -2.39 -0.02 0.70 16 33 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.05 0.51 8.13 -2.39 -0.02 0.49 16 38 H 0.06 0.54 6.79 -2.39 -0.02 0.52 16 39 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.34 4.62 8.73 -89.69 -0.78 3.83 16 42 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.08 2.25 7.08 -2.39 -0.02 2.24 16 45 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.11 3.90 8.02 -2.39 -0.02 3.88 16 47 H 0.11 3.88 7.66 -2.40 -0.02 3.86 16 48 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 49 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.10 1.90 6.05 -2.38 -0.01 1.89 16 51 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 52 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -73.65 418.59 1.99 -71.66 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.10 Total: 21.07 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 6.32 Total: -8.13 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -3.72 Total: -85.38 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -1.57 Total: -34.82 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -73.65 1.99 -71.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700145318.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.885 kcal (2) G-P(sol) polarization free energy of solvation -73.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds