Wall clock time and date at job start Sat Apr 11 2020 07:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46859 * 2 1 4 4 N 1.46897 * 109.46496 * 54.84111 * 3 2 1 5 5 C 1.46907 * 110.99617 * 56.46837 * 4 3 2 6 6 C 1.53005 * 109.46569 * 177.79277 * 5 4 3 7 7 C 1.53004 * 109.46928 * 180.02562 * 6 5 4 8 8 O 1.42890 * 109.47339 * 180.02562 * 7 6 5 9 9 C 1.42907 * 114.00214 * 180.02562 * 8 7 6 10 10 C 1.53042 * 109.46209 * 294.87794 * 3 2 1 11 11 C 1.53190 * 109.31483 * 178.61742 * 10 3 2 12 12 N 1.46928 * 108.77531 * 54.63624 * 11 10 3 13 13 C 1.34768 * 120.62794 * 126.37282 * 12 11 10 14 14 O 1.21283 * 120.00026 * 180.02562 * 13 12 11 15 15 C 1.50704 * 120.00409 * 0.02562 * 13 12 11 16 16 S 1.80994 * 109.47296 * 180.02562 * 15 13 12 17 17 C 1.76206 * 100.00048 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.38795 * 119.99784 * 179.97438 * 17 16 15 20 20 N 1.31638 * 119.99571 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00646 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.46981 * 89.99586 * 21 19 17 23 23 H 1.48489 * 109.47477 * 210.00025 * 21 19 17 24 24 H 1.48503 * 109.46581 * 330.00299 * 21 19 17 25 25 C 1.46923 * 118.74063 * 306.39027 * 12 11 10 26 26 C 1.53046 * 109.45923 * 174.81231 * 3 2 1 27 27 H 1.09006 * 109.46663 * 183.05760 * 1 2 3 28 28 H 1.08999 * 109.46795 * 303.05645 * 1 2 3 29 29 H 1.08994 * 109.46943 * 63.05847 * 1 2 3 30 30 H 1.08998 * 109.47316 * 239.99467 * 2 1 3 31 31 H 1.09004 * 109.47152 * 120.00026 * 2 1 3 32 32 H 1.00898 * 110.99893 * 292.52283 * 4 3 2 33 33 H 1.08992 * 109.47347 * 297.78951 * 5 4 3 34 34 H 1.08993 * 109.47225 * 57.79899 * 5 4 3 35 35 H 1.09000 * 109.47517 * 299.99526 * 6 5 4 36 36 H 1.09002 * 109.47363 * 60.00595 * 6 5 4 37 37 H 1.09001 * 109.47267 * 300.00279 * 7 6 5 38 38 H 1.08999 * 109.47350 * 59.99804 * 7 6 5 39 39 H 1.08997 * 109.46910 * 179.97438 * 9 8 7 40 40 H 1.08999 * 109.47048 * 299.99760 * 9 8 7 41 41 H 1.08999 * 109.46644 * 59.99950 * 9 8 7 42 42 H 1.08994 * 109.49873 * 298.56933 * 10 3 2 43 43 H 1.08998 * 109.49347 * 58.66712 * 10 3 2 44 44 H 1.09008 * 109.58324 * 294.85088 * 11 10 3 45 45 H 1.08997 * 109.58834 * 174.42966 * 11 10 3 46 46 H 1.08998 * 109.47052 * 300.00190 * 15 13 12 47 47 H 1.08997 * 109.47130 * 59.99822 * 15 13 12 48 48 H 0.97002 * 119.99544 * 180.02562 * 20 19 17 49 49 H 1.09006 * 109.58916 * 293.82723 * 25 12 11 50 50 H 1.08993 * 109.70681 * 173.46469 * 25 12 11 51 51 H 1.09001 * 109.49957 * 301.33808 * 26 3 2 52 52 H 1.09005 * 109.49513 * 61.43547 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4511 2.1698 1.1323 5 6 1.7463 1.4939 2.4028 6 6 1.1653 2.3082 3.5606 7 6 1.4731 1.6046 4.8839 8 8 0.9300 2.3647 5.9652 9 6 1.1637 1.7919 7.2534 10 6 1.6376 2.1256 -1.3091 11 6 2.1197 3.5795 -1.2910 12 7 3.5639 3.5955 -1.0211 13 6 4.4093 4.2443 -1.8460 14 8 5.5995 4.2498 -1.6126 15 6 3.8760 4.9631 -3.0585 16 16 5.2474 5.7289 -3.9577 17 6 4.3631 6.4760 -5.2861 18 1 3.2896 6.3733 -5.3454 19 6 5.0460 7.1972 -6.2556 20 7 4.3852 7.7557 -7.2477 21 14 6.9026 7.3754 -6.1526 22 1 7.5486 6.2563 -6.8844 23 1 7.3106 8.6664 -6.7623 24 1 7.3245 7.3449 -4.7291 25 6 4.0688 2.8905 0.1649 26 6 3.5648 1.4442 0.1305 27 1 -0.3633 -1.0263 0.0548 28 1 -0.3633 0.5606 0.8613 29 1 -0.3633 0.4656 -0.9161 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 0.4569 2.2883 1.0083 33 1 1.2996 0.4997 2.3978 34 1 2.8257 1.4067 2.5258 35 1 1.6120 3.3024 3.5657 36 1 0.0857 2.3954 3.4377 37 1 1.0268 0.6102 4.8791 38 1 2.5527 1.5177 5.0067 39 1 0.7211 2.4283 8.0196 40 1 0.7116 0.8011 7.2979 41 1 2.2369 1.7097 7.4251 42 1 2.0944 1.6013 -2.1484 43 1 0.5527 2.1033 -1.4125 44 1 1.5956 4.1285 -0.5085 45 1 1.9235 4.0416 -2.2584 46 1 3.3682 4.2509 -3.7089 47 1 3.1721 5.7335 -2.7438 48 1 4.8625 8.2594 -7.9255 49 1 3.7037 3.3832 1.0660 50 1 5.1587 2.8978 0.1605 51 1 3.8518 0.9369 1.0516 52 1 4.0035 0.9263 -0.7225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700215291.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:00 Heat of formation + Delta-G solvation = -88.745375 kcal Electronic energy + Delta-G solvation = -28723.691627 eV Core-core repulsion = 24849.177900 eV Total energy + Delta-G solvation = -3874.513727 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.56093 -38.80163 -38.26374 -35.65595 -33.98936 -32.40400 -31.92034 -30.90629 -30.36996 -28.91331 -27.13551 -25.65089 -25.34777 -24.69816 -23.41944 -22.15116 -21.67798 -19.90349 -18.69752 -17.61908 -16.97043 -16.74024 -16.70013 -15.94648 -15.80799 -15.51816 -15.35139 -15.00973 -14.91024 -14.76255 -14.63712 -14.08582 -13.76206 -13.67726 -13.34931 -13.10122 -12.82011 -12.74504 -12.69725 -12.42384 -12.15954 -12.13833 -12.09152 -11.87518 -11.54540 -11.50687 -11.45311 -11.27697 -11.21801 -11.11052 -10.97832 -10.67098 -10.54110 -10.40884 -10.10901 -9.82057 -9.34153 -8.97035 -8.80318 -8.43604 -8.32708 -6.87170 -6.25715 -3.96688 2.80924 3.05441 3.19449 3.30133 3.36115 3.53926 3.65801 3.91169 4.30591 4.36447 4.45102 4.53509 4.55999 4.70585 4.71994 4.78913 4.86271 4.88894 4.94045 4.96592 5.03926 5.06611 5.09705 5.13416 5.18325 5.21945 5.23188 5.28739 5.32874 5.38819 5.43416 5.57200 5.59274 5.67447 5.71292 5.72567 5.77003 5.80332 5.83512 5.89990 5.96879 5.99163 6.06145 6.19048 6.68602 6.73704 6.76650 7.07144 7.64671 7.97448 8.44767 8.57325 9.20810 10.83487 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.002128 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.884065 B =13151.700579 C =13865.446643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.152 4.152 3 C 0.119 3.881 4 N -0.672 5.672 5 C 0.057 3.943 6 C -0.117 4.117 7 C 0.063 3.937 8 O -0.392 6.392 9 C 0.032 3.968 10 C -0.125 4.125 11 C 0.116 3.884 12 N -0.611 5.611 13 C 0.532 3.468 14 O -0.524 6.524 15 C -0.120 4.120 16 S -0.145 6.145 17 C -0.519 4.519 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.235 1.235 25 C 0.125 3.875 26 C -0.120 4.120 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.342 0.658 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.086 0.914 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.270 0.730 49 H 0.074 0.926 50 H 0.084 0.916 51 H 0.070 0.930 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.819 -18.293 24.008 32.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.192 4.192 3 C 0.028 3.972 4 N -0.304 5.304 5 C -0.072 4.072 6 C -0.155 4.155 7 C -0.014 4.014 8 O -0.311 6.311 9 C -0.065 4.065 10 C -0.163 4.163 11 C -0.007 4.007 12 N -0.347 5.347 13 C 0.320 3.680 14 O -0.400 6.400 15 C -0.270 4.270 16 S 0.082 5.918 17 C -0.667 4.667 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.193 1.193 23 H -0.200 1.200 24 H -0.159 1.159 25 C 0.002 3.998 26 C -0.159 4.159 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.161 0.839 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.080 0.920 49 H 0.092 0.908 50 H 0.102 0.898 51 H 0.089 0.911 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.623 -17.543 24.209 31.116 hybrid contribution -1.286 -0.999 -0.448 1.689 sum -9.909 -18.541 23.761 31.727 Atomic orbital electron populations 1.21847 0.95708 1.01844 1.01975 1.22226 0.96317 0.98026 1.02593 1.20895 0.94652 0.90827 0.90810 1.60592 1.18412 1.50627 1.00725 1.21894 1.01269 0.95223 0.88818 1.21455 1.01929 1.00697 0.91373 1.22476 0.97548 0.94328 0.87085 1.87882 1.78726 1.49896 1.14602 1.22743 1.00237 0.98520 0.84992 1.22028 1.01288 0.96598 0.96401 1.21617 0.80611 0.96257 1.02253 1.47966 1.07181 1.53457 1.26063 1.20263 0.86174 0.78225 0.83383 1.90676 1.15550 1.60355 1.73396 1.23297 1.04109 1.02352 0.97282 1.84785 1.11007 1.66575 1.29463 1.22319 0.96906 1.38027 1.09452 0.89435 1.24712 0.98954 0.93730 0.93934 1.69946 1.36374 1.33216 1.12250 0.86733 0.85225 0.78436 0.81458 1.19264 1.19995 1.15897 1.21348 0.99789 0.90797 0.87861 1.21983 0.93878 0.97774 1.02228 0.92692 0.92886 0.92030 0.91309 0.91795 0.83852 0.94747 0.90531 0.90057 0.91348 0.93601 0.93198 0.89571 0.94161 0.94006 0.90798 0.90592 0.90429 0.89787 0.88748 0.88611 0.92002 0.90814 0.89761 0.91141 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 9.07 37.16 0.34 -0.54 16 2 C -0.15 -0.98 4.40 -26.73 -0.12 -1.09 16 3 C 0.12 0.89 0.32 -131.56 -0.04 0.85 16 4 N -0.67 -4.56 4.42 -99.92 -0.44 -5.00 16 5 C 0.06 0.35 4.61 -3.82 -0.02 0.33 16 6 C -0.12 -0.78 5.86 -26.73 -0.16 -0.93 16 7 C 0.06 0.42 5.94 37.16 0.22 0.64 16 8 O -0.39 -3.40 10.70 -35.23 -0.38 -3.77 16 9 C 0.03 0.18 11.01 101.05 1.11 1.29 16 10 C -0.12 -1.05 4.77 -26.61 -0.13 -1.18 16 11 C 0.12 1.26 6.08 -3.71 -0.02 1.23 16 12 N -0.61 -8.51 2.97 -172.77 -0.51 -9.03 16 13 C 0.53 9.93 7.72 -10.99 -0.08 9.85 16 14 O -0.52 -11.72 15.28 5.55 0.08 -11.64 16 15 C -0.12 -2.39 4.50 36.01 0.16 -2.23 16 16 S -0.14 -3.74 18.55 -107.50 -1.99 -5.74 16 17 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.74 13.97 55.49 0.78 -25.97 16 21 Si 0.86 22.05 27.74 -169.99 -4.72 17.33 16 22 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 25 C 0.12 1.50 6.17 -3.71 -0.02 1.48 16 26 C -0.12 -1.10 4.59 -26.61 -0.12 -1.22 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.28 6.07 -51.93 -0.32 -0.04 16 29 H 0.06 0.35 6.69 -51.93 -0.35 0.00 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.40 6.71 -51.93 -0.35 0.05 16 32 H 0.34 2.10 7.05 -39.29 -0.28 1.83 16 33 H 0.03 0.19 6.03 -51.93 -0.31 -0.12 16 34 H 0.08 0.50 6.31 -51.93 -0.33 0.17 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.52 6.58 -51.93 -0.34 0.18 16 44 H 0.08 0.79 7.74 -51.92 -0.40 0.39 16 45 H 0.08 0.95 5.93 -51.93 -0.31 0.64 16 46 H 0.09 1.76 7.69 -51.92 -0.40 1.36 16 47 H 0.10 1.80 7.94 -51.92 -0.41 1.39 16 48 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 49 H 0.07 0.86 7.74 -51.93 -0.40 0.45 16 50 H 0.08 1.19 7.01 -51.93 -0.36 0.83 16 51 H 0.07 0.55 6.50 -51.93 -0.34 0.21 16 52 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 407.05 15.07 6.13 6.13 Total: -1.00 -34.06 407.05 -8.84 -42.89 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -9.12 Total: -1.60 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 1.33 Total: -3.61 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: -0.18 Total: -40.00 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.29 Total: -15.41 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.72 Total: 17.33 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -1.99 Total: -5.74 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.06 -8.84 -42.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700215291.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.853 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds