Wall clock time and date at job start Sat Apr 11 2020 07:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46859 * 2 1 4 4 N 1.46897 * 109.46496 * 54.84111 * 3 2 1 5 5 C 1.46907 * 110.99617 * 56.46837 * 4 3 2 6 6 C 1.53005 * 109.46569 * 177.79277 * 5 4 3 7 7 C 1.53004 * 109.46928 * 180.02562 * 6 5 4 8 8 O 1.42890 * 109.47339 * 180.02562 * 7 6 5 9 9 C 1.42907 * 114.00214 * 180.02562 * 8 7 6 10 10 C 1.53042 * 109.46209 * 294.87794 * 3 2 1 11 11 C 1.53190 * 109.31483 * 178.61742 * 10 3 2 12 12 N 1.46928 * 108.77531 * 54.63624 * 11 10 3 13 13 C 1.34768 * 120.62794 * 126.37282 * 12 11 10 14 14 O 1.21283 * 120.00026 * 180.02562 * 13 12 11 15 15 C 1.50704 * 120.00409 * 0.02562 * 13 12 11 16 16 S 1.80994 * 109.47296 * 180.02562 * 15 13 12 17 17 C 1.76206 * 100.00048 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.38795 * 119.99784 * 179.97438 * 17 16 15 20 20 N 1.31638 * 119.99571 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00646 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.46981 * 89.99586 * 21 19 17 23 23 H 1.48489 * 109.47477 * 210.00025 * 21 19 17 24 24 H 1.48503 * 109.46581 * 330.00299 * 21 19 17 25 25 C 1.46923 * 118.74063 * 306.39027 * 12 11 10 26 26 C 1.53046 * 109.45923 * 174.81231 * 3 2 1 27 27 H 1.09006 * 109.46663 * 183.05760 * 1 2 3 28 28 H 1.08999 * 109.46795 * 303.05645 * 1 2 3 29 29 H 1.08994 * 109.46943 * 63.05847 * 1 2 3 30 30 H 1.08998 * 109.47316 * 239.99467 * 2 1 3 31 31 H 1.09004 * 109.47152 * 120.00026 * 2 1 3 32 32 H 1.00898 * 110.99893 * 292.52283 * 4 3 2 33 33 H 1.08992 * 109.47347 * 297.78951 * 5 4 3 34 34 H 1.08993 * 109.47225 * 57.79899 * 5 4 3 35 35 H 1.09000 * 109.47517 * 299.99526 * 6 5 4 36 36 H 1.09002 * 109.47363 * 60.00595 * 6 5 4 37 37 H 1.09001 * 109.47267 * 300.00279 * 7 6 5 38 38 H 1.08999 * 109.47350 * 59.99804 * 7 6 5 39 39 H 1.08997 * 109.46910 * 179.97438 * 9 8 7 40 40 H 1.08999 * 109.47048 * 299.99760 * 9 8 7 41 41 H 1.08999 * 109.46644 * 59.99950 * 9 8 7 42 42 H 1.08994 * 109.49873 * 298.56933 * 10 3 2 43 43 H 1.08998 * 109.49347 * 58.66712 * 10 3 2 44 44 H 1.09008 * 109.58324 * 294.85088 * 11 10 3 45 45 H 1.08997 * 109.58834 * 174.42966 * 11 10 3 46 46 H 1.08998 * 109.47052 * 300.00190 * 15 13 12 47 47 H 1.08997 * 109.47130 * 59.99822 * 15 13 12 48 48 H 0.97002 * 119.99544 * 180.02562 * 20 19 17 49 49 H 1.09006 * 109.58916 * 293.82723 * 25 12 11 50 50 H 1.08993 * 109.70681 * 173.46469 * 25 12 11 51 51 H 1.09001 * 109.49957 * 301.33808 * 26 3 2 52 52 H 1.09005 * 109.49513 * 61.43547 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4511 2.1698 1.1323 5 6 1.7463 1.4939 2.4028 6 6 1.1653 2.3082 3.5606 7 6 1.4731 1.6046 4.8839 8 8 0.9300 2.3647 5.9652 9 6 1.1637 1.7919 7.2534 10 6 1.6376 2.1256 -1.3091 11 6 2.1197 3.5795 -1.2910 12 7 3.5639 3.5955 -1.0211 13 6 4.4093 4.2443 -1.8460 14 8 5.5995 4.2498 -1.6126 15 6 3.8760 4.9631 -3.0585 16 16 5.2474 5.7289 -3.9577 17 6 4.3631 6.4760 -5.2861 18 1 3.2896 6.3733 -5.3454 19 6 5.0460 7.1972 -6.2556 20 7 4.3852 7.7557 -7.2477 21 14 6.9026 7.3754 -6.1526 22 1 7.5486 6.2563 -6.8844 23 1 7.3106 8.6664 -6.7623 24 1 7.3245 7.3449 -4.7291 25 6 4.0688 2.8905 0.1649 26 6 3.5648 1.4442 0.1305 27 1 -0.3633 -1.0263 0.0548 28 1 -0.3633 0.5606 0.8613 29 1 -0.3633 0.4656 -0.9161 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 0.4569 2.2883 1.0083 33 1 1.2996 0.4997 2.3978 34 1 2.8257 1.4067 2.5258 35 1 1.6120 3.3024 3.5657 36 1 0.0857 2.3954 3.4377 37 1 1.0268 0.6102 4.8791 38 1 2.5527 1.5177 5.0067 39 1 0.7211 2.4283 8.0196 40 1 0.7116 0.8011 7.2979 41 1 2.2369 1.7097 7.4251 42 1 2.0944 1.6013 -2.1484 43 1 0.5527 2.1033 -1.4125 44 1 1.5956 4.1285 -0.5085 45 1 1.9235 4.0416 -2.2584 46 1 3.3682 4.2509 -3.7089 47 1 3.1721 5.7335 -2.7438 48 1 4.8625 8.2594 -7.9255 49 1 3.7037 3.3832 1.0660 50 1 5.1587 2.8978 0.1605 51 1 3.8518 0.9369 1.0516 52 1 4.0035 0.9263 -0.7225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700215291.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:16:59 Heat of formation + Delta-G solvation = -111.414988 kcal Electronic energy + Delta-G solvation = -28724.674655 eV Core-core repulsion = 24849.177900 eV Total energy + Delta-G solvation = -3875.496756 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.50008 -39.89576 -38.85192 -36.68674 -34.67080 -34.61760 -32.90338 -31.53654 -31.19217 -30.20821 -27.85834 -27.60462 -26.20096 -25.29250 -24.20806 -22.99977 -22.23317 -20.94300 -19.94541 -19.28233 -18.13672 -17.49266 -17.21154 -17.15662 -16.81344 -16.76499 -16.43842 -16.19046 -15.79166 -15.64815 -15.38280 -15.19901 -14.92509 -14.76064 -14.61019 -14.49965 -13.78709 -13.69012 -13.52719 -13.32628 -13.23706 -13.08264 -13.00311 -12.73989 -12.70163 -12.65856 -12.58951 -12.20207 -12.08534 -11.96607 -11.95909 -11.85927 -11.63834 -11.42850 -11.16596 -11.16050 -10.81735 -10.60930 -10.49965 -9.69861 -9.14941 -8.98964 -8.50905 -6.21657 0.99098 1.31264 1.47139 1.55704 1.57622 2.15376 2.25882 2.70001 2.71919 2.87194 3.36577 3.55767 3.67805 3.88502 3.91118 4.04366 4.17693 4.20067 4.23498 4.28981 4.36318 4.40686 4.44701 4.46490 4.50617 4.53029 4.56230 4.59603 4.61659 4.63632 4.69990 4.79181 4.85794 4.88015 4.92251 4.96838 5.05655 5.12397 5.17381 5.20227 5.22285 5.27601 5.40678 5.44815 5.64860 5.71641 6.11837 6.15794 6.26721 6.37096 6.57633 6.94371 7.15193 8.61373 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.002128 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.884065 B =13151.700579 C =13865.446643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.146 4.146 3 C 0.127 3.873 4 N -0.677 5.677 5 C 0.064 3.936 6 C -0.109 4.109 7 C 0.061 3.939 8 O -0.421 6.421 9 C 0.026 3.974 10 C -0.120 4.120 11 C 0.109 3.891 12 N -0.597 5.597 13 C 0.530 3.470 14 O -0.569 6.569 15 C -0.104 4.104 16 S -0.178 6.178 17 C -0.527 4.527 18 H 0.063 0.937 19 C 0.046 3.954 20 N -0.916 5.916 21 Si 0.914 3.086 22 H -0.262 1.262 23 H -0.258 1.258 24 H -0.239 1.239 25 C 0.125 3.875 26 C -0.114 4.114 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.349 0.651 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.109 0.891 47 H 0.108 0.892 48 H 0.277 0.723 49 H 0.083 0.917 50 H 0.060 0.940 51 H 0.089 0.911 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.739 -19.915 25.569 34.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.186 4.186 3 C 0.036 3.964 4 N -0.310 5.310 5 C -0.065 4.065 6 C -0.147 4.147 7 C -0.016 4.016 8 O -0.341 6.341 9 C -0.070 4.070 10 C -0.158 4.158 11 C -0.013 4.013 12 N -0.330 5.330 13 C 0.318 3.682 14 O -0.449 6.449 15 C -0.254 4.254 16 S 0.048 5.952 17 C -0.675 4.675 18 H 0.081 0.919 19 C -0.159 4.159 20 N -0.554 5.554 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.182 1.182 24 H -0.163 1.163 25 C 0.003 3.997 26 C -0.152 4.152 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.170 0.830 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.127 0.873 47 H 0.126 0.874 48 H 0.086 0.914 49 H 0.101 0.899 50 H 0.079 0.921 51 H 0.107 0.893 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.600 -19.187 25.792 33.549 hybrid contribution -1.155 -0.561 -0.810 1.518 sum -10.755 -19.748 24.982 33.612 Atomic orbital electron populations 1.21826 0.94819 1.02209 1.02262 1.22149 0.96977 0.96796 1.02649 1.20752 0.93374 0.91730 0.90584 1.60542 1.18989 1.50777 1.00719 1.21831 1.01089 0.95512 0.88076 1.21367 1.01700 0.99845 0.91816 1.22552 0.97844 0.94652 0.86570 1.87838 1.79192 1.51122 1.15902 1.22898 1.00887 0.99189 0.84042 1.22009 1.02562 0.94551 0.96719 1.21882 0.78520 0.98391 1.02482 1.48009 1.08097 1.51577 1.25311 1.20014 0.85983 0.78676 0.83554 1.90658 1.17318 1.62395 1.74500 1.23259 1.01790 1.02776 0.97610 1.84720 1.14129 1.67158 1.29163 1.22442 0.96094 1.38229 1.10709 0.91921 1.25542 1.03215 0.93483 0.93660 1.70018 1.38222 1.34049 1.13071 0.85878 0.80082 0.79191 0.81291 1.18682 1.18246 1.16257 1.21464 0.98561 0.92648 0.87053 1.21937 0.95145 0.95388 1.02759 0.92394 0.92237 0.92044 0.91872 0.91197 0.83049 0.93548 0.90831 0.91882 0.91401 0.92334 0.92838 0.88909 0.93029 0.93401 0.91654 0.88313 0.89075 0.90258 0.87276 0.87351 0.91377 0.89901 0.92112 0.89308 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.07 71.98 0.65 -0.58 16 2 C -0.15 -1.45 4.40 30.59 0.13 -1.31 16 3 C 0.13 1.56 0.32 3.56 0.00 1.57 16 4 N -0.68 -7.35 4.42 -470.04 -2.08 -9.43 16 5 C 0.06 0.60 4.61 86.30 0.40 1.00 16 6 C -0.11 -1.26 5.86 30.60 0.18 -1.08 16 7 C 0.06 0.70 5.94 71.98 0.43 1.13 16 8 O -0.42 -6.78 10.70 -148.98 -1.59 -8.38 16 9 C 0.03 0.25 11.01 113.37 1.25 1.50 16 10 C -0.12 -1.74 4.77 30.67 0.15 -1.59 16 11 C 0.11 2.16 6.08 86.36 0.53 2.68 16 12 N -0.60 -16.03 2.97 -818.91 -2.43 -18.46 16 13 C 0.53 19.71 7.72 87.66 0.68 20.39 16 14 O -0.57 -25.79 15.28 -3.04 -0.05 -25.83 16 15 C -0.10 -4.11 4.50 71.24 0.32 -3.79 16 16 S -0.18 -9.28 18.55 -56.49 -1.05 -10.33 16 17 C -0.53 -31.13 10.04 67.95 0.68 -30.45 16 18 H 0.06 3.89 8.03 -2.91 -0.02 3.86 16 19 C 0.05 2.76 5.50 84.86 0.47 3.22 16 20 N -0.92 -56.09 13.97 21.65 0.30 -55.79 16 21 Si 0.91 45.67 27.74 68.60 1.90 47.58 16 22 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.24 -11.99 6.74 99.48 0.67 -11.32 16 25 C 0.12 2.88 6.17 86.36 0.53 3.42 16 26 C -0.11 -1.87 4.59 30.68 0.14 -1.73 16 27 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 28 H 0.06 0.41 6.07 -2.39 -0.01 0.40 16 29 H 0.06 0.50 6.69 -2.39 -0.02 0.49 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.64 6.71 -2.38 -0.02 0.62 16 32 H 0.35 3.17 7.05 -89.70 -0.63 2.54 16 33 H 0.05 0.36 6.03 -2.39 -0.01 0.34 16 34 H 0.07 0.77 6.31 -2.39 -0.02 0.75 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.10 1.04 6.58 -2.39 -0.02 1.02 16 44 H 0.09 1.62 7.74 -2.38 -0.02 1.61 16 45 H 0.08 1.66 5.93 -2.39 -0.01 1.65 16 46 H 0.11 4.00 7.69 -2.40 -0.02 3.98 16 47 H 0.11 4.02 7.94 -2.40 -0.02 4.00 16 48 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 49 H 0.08 1.80 7.74 -2.38 -0.02 1.78 16 50 H 0.06 1.72 7.01 -2.39 -0.02 1.71 16 51 H 0.09 1.17 6.50 -2.39 -0.02 1.15 16 52 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -74.44 407.05 1.77 -72.67 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.23 Total: 13.60 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 6.53 Total: -5.62 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -4.21 Total: -83.68 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.64 Total: -34.21 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.90 Total: 47.58 kcal Atomic # 16 Polarization: -9.28 SS G_CDS: -1.05 Total: -10.33 kcal Total: -74.44 1.77 -72.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700215291.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.749 kcal (2) G-P(sol) polarization free energy of solvation -74.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds