Wall clock time and date at job start Sat Apr 11 2020 07:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46946 * 2 1 4 4 C 1.53000 * 109.47311 * 120.00092 * 2 1 3 5 5 C 1.52991 * 109.47071 * 64.99854 * 4 2 1 6 6 C 1.53002 * 109.47546 * 180.02562 * 5 4 2 7 7 N 1.46898 * 109.47604 * 180.02562 * 6 5 4 8 8 C 1.47009 * 111.00106 * 65.31057 * 7 6 5 9 9 C 1.53097 * 109.25750 * 177.60802 * 8 7 6 10 10 O 1.43023 * 109.25623 * 56.85052 * 9 8 7 11 11 C 1.43016 * 113.73493 * 301.32777 * 10 9 8 12 12 C 1.47009 * 110.99601 * 301.67573 * 7 6 5 13 13 H 1.09001 * 109.50902 * 62.45770 * 12 7 6 14 14 C 1.53000 * 109.51002 * 302.32677 * 12 7 6 15 15 N 1.46508 * 109.47089 * 305.64149 * 14 12 7 16 16 C 1.34771 * 119.99937 * 184.99255 * 15 14 12 17 17 O 1.21286 * 120.00390 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99758 * 180.02562 * 16 15 14 19 19 S 1.81005 * 109.47056 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99899 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99849 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99525 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99552 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00437 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.46896 * 89.99857 * 24 22 20 26 26 H 1.48498 * 109.47235 * 209.99755 * 24 22 20 27 27 H 1.48498 * 109.47220 * 330.00096 * 24 22 20 28 28 H 1.08997 * 109.47385 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47218 * 299.99832 * 1 2 3 30 30 H 1.09003 * 109.47497 * 59.99786 * 1 2 3 31 31 H 1.09005 * 109.46700 * 240.00215 * 2 1 3 32 32 H 1.09002 * 109.47208 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47362 * 299.99648 * 3 2 1 34 34 H 1.08995 * 109.47764 * 60.00379 * 3 2 1 35 35 H 1.08997 * 109.46857 * 305.00089 * 4 2 1 36 36 H 1.08998 * 109.46923 * 184.99740 * 4 2 1 37 37 H 1.09008 * 109.47295 * 59.99913 * 5 4 2 38 38 H 1.09003 * 109.47466 * 300.00402 * 5 4 2 39 39 H 1.09007 * 109.46648 * 300.00078 * 6 5 4 40 40 H 1.08998 * 109.47122 * 59.99523 * 6 5 4 41 41 H 1.09007 * 109.50737 * 297.54358 * 8 7 6 42 42 H 1.08996 * 109.51126 * 57.62815 * 8 7 6 43 43 H 1.09001 * 109.50595 * 176.77983 * 9 8 7 44 44 H 1.09001 * 109.50911 * 296.91037 * 9 8 7 45 45 H 1.09000 * 109.50300 * 178.61236 * 11 10 9 46 46 H 1.09003 * 109.50498 * 298.69217 * 11 10 9 47 47 H 1.09000 * 109.47249 * 65.63551 * 14 12 7 48 48 H 1.08998 * 109.47444 * 185.63741 * 14 12 7 49 49 H 0.96996 * 119.99714 * 4.98902 * 15 14 12 50 50 H 1.08997 * 109.47283 * 299.99619 * 18 16 15 51 51 H 1.08997 * 109.47237 * 59.99727 * 18 16 15 52 52 H 0.97007 * 120.00168 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1954 1.1879 6 6 2.1448 -2.9166 2.4374 7 7 1.7567 -4.3322 2.3783 8 6 2.4274 -5.0163 1.2633 9 6 2.0422 -6.4979 1.2748 10 8 0.6186 -6.6158 1.2046 11 6 -0.0667 -5.9614 2.2758 12 6 0.2971 -4.4743 2.2744 13 1 -0.0481 -4.0160 1.3476 14 6 -0.3696 -3.7841 3.4660 15 7 0.1928 -4.3102 4.7124 16 6 -0.3153 -3.9203 5.8982 17 8 -1.2377 -3.1337 5.9337 18 6 0.2636 -4.4610 7.1803 19 16 -0.6254 -3.7535 8.5893 20 6 0.2322 -4.5346 9.9156 21 1 1.0419 -5.2180 9.7069 22 6 -0.1324 -4.2707 11.2286 23 7 0.5078 -4.8546 12.2194 24 14 -1.5326 -3.0880 11.5896 25 1 -2.8125 -3.8390 11.6467 26 1 -1.2922 -2.4196 12.8936 27 1 -1.6062 -2.0655 10.5153 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6054 -0.2618 2.1369 36 1 3.1264 -0.6443 1.2950 37 1 2.0699 -2.6550 0.3001 38 1 0.5490 -2.2724 1.1420 39 1 3.2311 -2.8397 2.4837 40 1 1.7099 -2.4570 3.3249 41 1 2.1162 -4.5666 0.3203 42 1 3.5074 -4.9194 1.3736 43 1 2.4915 -6.9975 0.4165 44 1 2.4008 -6.9601 2.1946 45 1 -1.1426 -6.0731 2.1416 46 1 0.2300 -6.4085 3.2247 47 1 -0.1900 -2.7104 3.4112 48 1 -1.4425 -3.9747 3.4426 49 1 0.9307 -4.9390 4.6840 50 1 0.1635 -5.5463 7.1949 51 1 1.3181 -4.1926 7.2445 52 1 0.2529 -4.6705 13.1371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754963656.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:18:26 Heat of formation + Delta-G solvation = -98.120998 kcal Electronic energy + Delta-G solvation = -28813.737156 eV Core-core repulsion = 24938.816871 eV Total energy + Delta-G solvation = -3874.920285 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.64413 -38.95579 -37.71045 -36.26971 -34.63440 -32.42036 -31.78491 -31.73085 -29.43251 -28.15136 -27.51877 -26.29288 -25.56124 -24.74579 -22.96837 -22.56609 -20.56615 -20.31936 -19.55596 -17.87572 -17.06809 -16.85836 -16.49713 -15.96552 -15.78528 -15.43143 -15.13403 -14.99843 -14.95249 -14.77440 -14.71011 -14.41694 -13.76848 -13.69255 -13.54340 -13.29656 -13.13150 -12.77900 -12.60707 -12.54261 -12.39235 -12.11334 -12.03943 -11.90952 -11.80887 -11.54951 -11.25252 -11.24357 -11.13876 -10.99447 -10.97729 -10.72568 -10.67422 -10.56913 -10.00147 -9.84136 -9.49021 -8.99257 -8.88292 -8.69093 -8.47358 -6.89183 -6.27108 -3.98364 2.80000 3.02668 3.26306 3.34285 3.44723 3.51539 3.52081 3.75073 4.26819 4.34747 4.38469 4.43026 4.48258 4.55140 4.59444 4.71423 4.79386 4.83529 4.85416 4.91619 4.99797 5.09285 5.11967 5.23781 5.26427 5.27078 5.32247 5.32809 5.38262 5.39525 5.45227 5.51624 5.51995 5.56411 5.59027 5.66518 5.68499 5.73752 5.81255 5.81799 5.89906 6.01553 6.05981 6.06431 6.47871 6.58172 6.65909 6.78997 7.72444 7.96094 8.43917 8.55660 9.19198 10.82157 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.002549 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.181555 B =10980.158037 C =12618.327729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.111 4.111 5 C -0.159 4.159 6 C 0.050 3.950 7 N -0.528 5.528 8 C 0.017 3.983 9 C 0.061 3.939 10 O -0.384 6.384 11 C 0.067 3.933 12 C 0.034 3.966 13 H 0.069 0.931 14 C 0.131 3.869 15 N -0.725 5.725 16 C 0.529 3.471 17 O -0.524 6.524 18 C -0.122 4.122 19 S -0.143 6.143 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.100 0.900 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.406 0.594 50 H 0.095 0.905 51 H 0.096 0.904 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.155 3.271 -29.172 29.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.149 4.149 5 C -0.198 4.198 6 C -0.078 4.078 7 N -0.252 5.252 8 C -0.111 4.111 9 C -0.016 4.016 10 O -0.302 6.302 11 C -0.010 4.010 12 C -0.075 4.075 13 H 0.086 0.914 14 C 0.006 3.994 15 N -0.381 5.381 16 C 0.315 3.685 17 O -0.399 6.399 18 C -0.273 4.273 19 S 0.083 5.917 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.518 5.518 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.118 0.882 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.093 0.907 49 H 0.242 0.758 50 H 0.114 0.886 51 H 0.115 0.885 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.697 4.214 -28.623 29.167 hybrid contribution 0.890 -0.212 -0.209 0.939 sum 4.587 4.002 -28.832 29.468 Atomic orbital electron populations 1.21897 0.95222 1.01776 1.01802 1.21113 0.95977 0.96155 0.98242 1.21847 1.00853 0.96054 1.01823 1.21568 1.00801 0.94509 0.98068 1.22310 1.01873 0.96294 0.99285 1.22337 1.01159 0.86300 0.98011 1.62410 1.05996 1.13648 1.43187 1.22817 1.00005 0.95345 0.92980 1.22697 0.81563 0.94746 1.02625 1.88007 1.18449 1.75309 1.48440 1.22744 0.97492 0.89817 0.90952 1.22643 0.88826 0.97725 0.98297 0.91361 1.21224 0.97749 0.98093 0.82364 1.45849 1.38486 1.49182 1.04585 1.20276 0.82704 0.80955 0.84540 1.90697 1.28325 1.33779 1.87116 1.23258 1.04217 1.04346 0.95482 1.84768 1.48322 1.61335 0.97238 1.22323 1.21822 1.31394 0.91230 0.89401 1.24718 0.96279 0.95362 0.95008 1.69944 1.40420 1.42027 0.99376 0.86730 0.82640 0.82743 0.79707 1.19236 1.19999 1.15924 0.92624 0.92489 0.92932 0.91602 0.92788 0.92841 0.92540 0.91601 0.91954 0.92007 0.91347 0.90447 0.89663 0.93571 0.89491 0.88535 0.92038 0.88164 0.91785 0.91374 0.90714 0.75834 0.88622 0.88531 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.95 37.16 0.33 -0.70 16 2 C -0.10 -0.64 2.92 -90.62 -0.26 -0.90 16 3 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 4 C -0.11 -0.77 4.68 -26.74 -0.13 -0.89 16 5 C -0.16 -1.09 4.26 -26.73 -0.11 -1.20 16 6 C 0.05 0.38 4.87 -3.82 -0.02 0.36 16 7 N -0.53 -4.16 4.09 -226.34 -0.93 -5.09 16 8 C 0.02 0.11 5.31 -3.71 -0.02 0.09 16 9 C 0.06 0.44 7.01 37.21 0.26 0.70 16 10 O -0.38 -3.68 10.83 -35.23 -0.38 -4.06 16 11 C 0.07 0.59 6.20 37.21 0.23 0.82 16 12 C 0.03 0.28 1.74 -67.60 -0.12 0.17 16 13 H 0.07 0.56 6.42 -51.93 -0.33 0.23 16 14 C 0.13 1.38 4.66 -4.04 -0.02 1.36 16 15 N -0.73 -9.04 5.05 -60.29 -0.30 -9.34 16 16 C 0.53 9.24 7.85 -10.99 -0.09 9.15 16 17 O -0.52 -11.12 15.86 5.55 0.09 -11.03 16 18 C -0.12 -2.37 6.16 36.01 0.22 -2.14 16 19 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 20 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 21 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 22 C 0.09 2.78 5.50 -17.43 -0.10 2.69 16 23 N -0.88 -26.68 13.97 55.49 0.78 -25.90 16 24 Si 0.86 21.87 27.74 -169.99 -4.72 17.16 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 26 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 28 H 0.05 0.38 6.56 -51.93 -0.34 0.04 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.42 6.59 -51.92 -0.34 0.08 16 38 H 0.07 0.51 4.85 -51.93 -0.25 0.26 16 39 H 0.08 0.57 8.12 -51.92 -0.42 0.15 16 40 H 0.09 0.81 6.49 -51.93 -0.34 0.47 16 41 H 0.05 0.32 6.57 -51.92 -0.34 -0.02 16 42 H 0.09 0.51 8.13 -51.93 -0.42 0.09 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 0.59 7.26 -51.93 -0.38 0.21 16 47 H 0.07 0.77 6.74 -51.93 -0.35 0.42 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.41 4.43 7.42 -40.82 -0.30 4.13 16 50 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 51 H 0.10 1.76 8.14 -51.92 -0.42 1.33 16 52 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 411.85 15.07 6.21 6.21 Total: -1.00 -33.16 411.85 -9.73 -42.89 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -9.32 Total: 0.60 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 0.84 Total: -5.80 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: -0.46 Total: -40.34 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.29 Total: -15.10 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.16 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.16 -9.73 -42.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754963656.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.236 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds