Wall clock time and date at job start Sat Apr 11 2020 07:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46946 * 2 1 4 4 C 1.53000 * 109.47311 * 120.00092 * 2 1 3 5 5 C 1.52991 * 109.47071 * 64.99854 * 4 2 1 6 6 C 1.53002 * 109.47546 * 180.02562 * 5 4 2 7 7 N 1.46898 * 109.47604 * 180.02562 * 6 5 4 8 8 C 1.47009 * 111.00106 * 65.31057 * 7 6 5 9 9 C 1.53097 * 109.25750 * 177.60802 * 8 7 6 10 10 O 1.43023 * 109.25623 * 56.85052 * 9 8 7 11 11 C 1.43016 * 113.73493 * 301.32777 * 10 9 8 12 12 C 1.47009 * 110.99601 * 301.67573 * 7 6 5 13 13 H 1.09001 * 109.50902 * 62.45770 * 12 7 6 14 14 C 1.53000 * 109.51002 * 302.32677 * 12 7 6 15 15 N 1.46508 * 109.47089 * 305.64149 * 14 12 7 16 16 C 1.34771 * 119.99937 * 184.99255 * 15 14 12 17 17 O 1.21286 * 120.00390 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99758 * 180.02562 * 16 15 14 19 19 S 1.81005 * 109.47056 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99899 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99849 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99525 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99552 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00437 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.46896 * 89.99857 * 24 22 20 26 26 H 1.48498 * 109.47235 * 209.99755 * 24 22 20 27 27 H 1.48498 * 109.47220 * 330.00096 * 24 22 20 28 28 H 1.08997 * 109.47385 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47218 * 299.99832 * 1 2 3 30 30 H 1.09003 * 109.47497 * 59.99786 * 1 2 3 31 31 H 1.09005 * 109.46700 * 240.00215 * 2 1 3 32 32 H 1.09002 * 109.47208 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47362 * 299.99648 * 3 2 1 34 34 H 1.08995 * 109.47764 * 60.00379 * 3 2 1 35 35 H 1.08997 * 109.46857 * 305.00089 * 4 2 1 36 36 H 1.08998 * 109.46923 * 184.99740 * 4 2 1 37 37 H 1.09008 * 109.47295 * 59.99913 * 5 4 2 38 38 H 1.09003 * 109.47466 * 300.00402 * 5 4 2 39 39 H 1.09007 * 109.46648 * 300.00078 * 6 5 4 40 40 H 1.08998 * 109.47122 * 59.99523 * 6 5 4 41 41 H 1.09007 * 109.50737 * 297.54358 * 8 7 6 42 42 H 1.08996 * 109.51126 * 57.62815 * 8 7 6 43 43 H 1.09001 * 109.50595 * 176.77983 * 9 8 7 44 44 H 1.09001 * 109.50911 * 296.91037 * 9 8 7 45 45 H 1.09000 * 109.50300 * 178.61236 * 11 10 9 46 46 H 1.09003 * 109.50498 * 298.69217 * 11 10 9 47 47 H 1.09000 * 109.47249 * 65.63551 * 14 12 7 48 48 H 1.08998 * 109.47444 * 185.63741 * 14 12 7 49 49 H 0.96996 * 119.99714 * 4.98902 * 15 14 12 50 50 H 1.08997 * 109.47283 * 299.99619 * 18 16 15 51 51 H 1.08997 * 109.47237 * 59.99727 * 18 16 15 52 52 H 0.97007 * 120.00168 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1954 1.1879 6 6 2.1448 -2.9166 2.4374 7 7 1.7567 -4.3322 2.3783 8 6 2.4274 -5.0163 1.2633 9 6 2.0422 -6.4979 1.2748 10 8 0.6186 -6.6158 1.2046 11 6 -0.0667 -5.9614 2.2758 12 6 0.2971 -4.4743 2.2744 13 1 -0.0481 -4.0160 1.3476 14 6 -0.3696 -3.7841 3.4660 15 7 0.1928 -4.3102 4.7124 16 6 -0.3153 -3.9203 5.8982 17 8 -1.2377 -3.1337 5.9337 18 6 0.2636 -4.4610 7.1803 19 16 -0.6254 -3.7535 8.5893 20 6 0.2322 -4.5346 9.9156 21 1 1.0419 -5.2180 9.7069 22 6 -0.1324 -4.2707 11.2286 23 7 0.5078 -4.8546 12.2194 24 14 -1.5326 -3.0880 11.5896 25 1 -2.8125 -3.8390 11.6467 26 1 -1.2922 -2.4196 12.8936 27 1 -1.6062 -2.0655 10.5153 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6054 -0.2618 2.1369 36 1 3.1264 -0.6443 1.2950 37 1 2.0699 -2.6550 0.3001 38 1 0.5490 -2.2724 1.1420 39 1 3.2311 -2.8397 2.4837 40 1 1.7099 -2.4570 3.3249 41 1 2.1162 -4.5666 0.3203 42 1 3.5074 -4.9194 1.3736 43 1 2.4915 -6.9975 0.4165 44 1 2.4008 -6.9601 2.1946 45 1 -1.1426 -6.0731 2.1416 46 1 0.2300 -6.4085 3.2247 47 1 -0.1900 -2.7104 3.4112 48 1 -1.4425 -3.9747 3.4426 49 1 0.9307 -4.9390 4.6840 50 1 0.1635 -5.5463 7.1949 51 1 1.3181 -4.1926 7.2445 52 1 0.2529 -4.6705 13.1371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754963656.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:18:24 Heat of formation + Delta-G solvation = -120.607470 kcal Electronic energy + Delta-G solvation = -28814.712242 eV Core-core repulsion = 24938.816871 eV Total energy + Delta-G solvation = -3875.895372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.42525 -40.22492 -38.30276 -36.97731 -35.65108 -34.66084 -32.78093 -32.30196 -30.74165 -28.83211 -28.05266 -27.87280 -27.09413 -25.34988 -23.69021 -23.18515 -21.84216 -20.87943 -20.30070 -19.86877 -17.94583 -17.75626 -17.65021 -17.11878 -16.84138 -16.49881 -16.38949 -16.13317 -15.80294 -15.56255 -15.53173 -15.33138 -15.00327 -14.84996 -14.54200 -14.39632 -14.25726 -14.06775 -13.45392 -13.33555 -13.15966 -13.10564 -13.02725 -12.97419 -12.71824 -12.66678 -12.56367 -12.45558 -12.18156 -11.85690 -11.82967 -11.70186 -11.51821 -11.32075 -11.25346 -11.16185 -10.98824 -10.69524 -10.52070 -10.04538 -9.31925 -8.97790 -8.50551 -6.20900 1.00534 1.32066 1.47739 1.57291 1.60944 2.24056 2.28184 2.70029 2.79507 2.87639 2.89481 3.62843 3.69826 3.77511 3.87383 3.95563 4.01223 4.03468 4.11146 4.19274 4.24807 4.29643 4.34403 4.42480 4.49550 4.53484 4.59202 4.64336 4.69620 4.71085 4.73735 4.77575 4.80581 4.85079 4.93568 4.96625 5.01093 5.06448 5.07984 5.17447 5.26538 5.34019 5.41039 5.47292 5.51483 5.71847 5.92077 5.97525 6.12655 6.15894 6.52696 6.94656 7.23519 8.61890 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.002549 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.181555 B =10980.158037 C =12618.327729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.109 4.109 5 C -0.149 4.149 6 C 0.053 3.947 7 N -0.535 5.535 8 C 0.020 3.980 9 C 0.056 3.944 10 O -0.399 6.399 11 C 0.066 3.934 12 C 0.047 3.953 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.699 5.699 16 C 0.536 3.464 17 O -0.564 6.564 18 C -0.110 4.110 19 S -0.174 6.174 20 C -0.528 4.528 21 H 0.061 0.939 22 C 0.044 3.956 23 N -0.918 5.918 24 Si 0.915 3.085 25 H -0.262 1.262 26 H -0.260 1.260 27 H -0.236 1.236 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.048 0.952 42 H 0.100 0.900 43 H 0.114 0.886 44 H 0.060 0.940 45 H 0.105 0.895 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.417 0.583 50 H 0.111 0.889 51 H 0.110 0.890 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.468 3.417 -31.201 31.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.147 4.147 5 C -0.188 4.188 6 C -0.074 4.074 7 N -0.259 5.259 8 C -0.107 4.107 9 C -0.020 4.020 10 O -0.318 6.318 11 C -0.011 4.011 12 C -0.062 4.062 13 H 0.093 0.907 14 C 0.008 3.992 15 N -0.353 5.353 16 C 0.321 3.679 17 O -0.443 6.443 18 C -0.261 4.261 19 S 0.053 5.947 20 C -0.676 4.676 21 H 0.080 0.920 22 C -0.161 4.161 23 N -0.556 5.556 24 Si 0.737 3.263 25 H -0.187 1.187 26 H -0.184 1.184 27 H -0.160 1.160 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.119 0.881 43 H 0.132 0.868 44 H 0.078 0.922 45 H 0.123 0.877 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.090 0.910 49 H 0.255 0.745 50 H 0.129 0.871 51 H 0.128 0.872 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.048 4.334 -30.688 31.255 hybrid contribution 0.906 -0.338 0.275 1.006 sum 4.954 3.996 -30.413 31.072 Atomic orbital electron populations 1.21893 0.95527 1.01669 1.01575 1.21105 0.95684 0.96313 0.98217 1.21846 1.01126 0.95884 1.01721 1.21535 1.00973 0.94499 0.97676 1.22207 1.01414 0.96120 0.99050 1.22268 1.01409 0.86175 0.97579 1.62413 1.05576 1.13836 1.44078 1.22836 1.00609 0.94795 0.92479 1.22868 0.80513 0.95225 1.03408 1.87994 1.19709 1.75471 1.48580 1.22755 0.97892 0.89727 0.90699 1.22480 0.89182 0.97343 0.97205 0.90650 1.21326 0.97815 0.98128 0.81928 1.45611 1.37797 1.48085 1.03847 1.19892 0.82304 0.80620 0.85091 1.90689 1.30230 1.35797 1.87597 1.23247 1.04101 1.04897 0.93860 1.84674 1.49306 1.61944 0.98797 1.22468 1.21321 1.30969 0.92803 0.92036 1.25576 0.98614 0.96945 0.94952 1.70022 1.42014 1.43499 1.00025 0.85857 0.79716 0.80771 0.79966 1.18708 1.18400 1.16016 0.92663 0.93428 0.92454 0.91055 0.92363 0.92382 0.93226 0.92919 0.91501 0.91309 0.91952 0.89772 0.91537 0.93355 0.88147 0.86805 0.92210 0.87683 0.92295 0.91709 0.90960 0.74549 0.87119 0.87159 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.95 71.98 0.64 -1.27 16 2 C -0.09 -1.12 2.92 -10.79 -0.03 -1.15 16 3 C -0.15 -1.72 9.19 71.98 0.66 -1.06 16 4 C -0.11 -1.36 4.68 30.59 0.14 -1.22 16 5 C -0.15 -1.78 4.26 30.59 0.13 -1.65 16 6 C 0.05 0.73 4.87 86.30 0.42 1.15 16 7 N -0.53 -7.30 4.09 -870.02 -3.56 -10.85 16 8 C 0.02 0.22 5.31 86.31 0.46 0.68 16 9 C 0.06 0.69 7.01 72.01 0.50 1.19 16 10 O -0.40 -6.85 10.83 -148.98 -1.61 -8.46 16 11 C 0.07 1.05 6.20 72.01 0.45 1.49 16 12 C 0.05 0.70 1.74 44.93 0.08 0.78 16 13 H 0.08 1.08 6.42 -2.39 -0.02 1.07 16 14 C 0.13 2.62 4.66 86.38 0.40 3.03 16 15 N -0.70 -16.37 5.05 -463.05 -2.34 -18.70 16 16 C 0.54 18.12 7.85 87.66 0.69 18.80 16 17 O -0.56 -23.66 15.86 -3.05 -0.05 -23.71 16 18 C -0.11 -4.15 6.16 71.24 0.44 -3.71 16 19 S -0.17 -8.78 18.55 -56.49 -1.05 -9.83 16 20 C -0.53 -30.85 10.04 67.95 0.68 -30.16 16 21 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 22 C 0.04 2.62 5.50 84.86 0.47 3.08 16 23 N -0.92 -56.10 13.97 21.65 0.30 -55.79 16 24 Si 0.91 45.17 27.74 68.60 1.90 47.07 16 25 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 27 H -0.24 -11.62 6.74 99.48 0.67 -10.95 16 28 H 0.05 0.70 6.56 -2.39 -0.02 0.68 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.75 6.59 -2.38 -0.02 0.74 16 38 H 0.06 0.83 4.85 -2.39 -0.01 0.82 16 39 H 0.08 1.06 8.12 -2.38 -0.02 1.04 16 40 H 0.07 1.18 6.49 -2.39 -0.02 1.17 16 41 H 0.05 0.53 6.57 -2.38 -0.02 0.52 16 42 H 0.10 0.86 8.13 -2.39 -0.02 0.85 16 43 H 0.11 0.97 8.14 -2.39 -0.02 0.96 16 44 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.06 0.98 7.26 -2.39 -0.02 0.96 16 47 H 0.06 1.39 6.74 -2.39 -0.02 1.38 16 48 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.42 8.25 7.42 -92.71 -0.69 7.56 16 50 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 51 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 52 H 0.28 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -71.15 411.85 -0.10 -71.24 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.17 Total: 19.06 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 6.14 Total: -10.02 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -5.59 Total: -85.35 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.66 Total: -32.17 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.07 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.05 Total: -9.83 kcal Total: -71.15 -0.10 -71.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754963656.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.364 kcal (2) G-P(sol) polarization free energy of solvation -71.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds