Wall clock time and date at job start Sat Apr 11 2020 07:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47019 * 2 1 4 4 C 1.50702 * 109.46879 * 119.99547 * 2 1 3 5 5 O 1.21281 * 120.00128 * 359.97438 * 4 2 1 6 6 N 1.34778 * 119.99983 * 180.02562 * 4 2 1 7 7 C 1.46497 * 120.00233 * 179.97438 * 6 4 2 8 8 H 1.09000 * 108.79888 * 36.42968 * 7 6 4 9 9 C 1.52248 * 108.90141 * 154.99905 * 7 6 4 10 10 C 1.51839 * 110.76448 * 88.41433 * 9 7 6 11 11 C 1.54340 * 110.74996 * 294.64144 * 10 9 7 12 12 C 1.54470 * 102.83659 * 206.91761 * 11 10 9 13 13 N 1.47090 * 107.30512 * 21.47012 * 12 11 10 14 14 C 1.36944 * 125.62626 * 180.97718 * 13 12 11 15 15 H 1.07995 * 119.99798 * 173.95518 * 14 13 12 16 16 C 1.38811 * 119.99518 * 353.94937 * 14 13 12 17 17 N 1.31617 * 120.00462 * 6.85863 * 16 14 13 18 18 Si 1.86804 * 119.99627 * 186.85573 * 16 14 13 19 19 H 1.48505 * 109.47093 * 94.98540 * 18 16 14 20 20 H 1.48498 * 109.47596 * 214.98942 * 18 16 14 21 21 H 1.48504 * 109.47139 * 334.98777 * 18 16 14 22 22 C 1.47582 * 108.74677 * 0.97774 * 13 12 11 23 23 O 1.42042 * 110.70991 * 57.79232 * 10 9 7 24 24 C 1.36224 * 115.91448 * 304.98048 * 23 10 9 25 25 C 1.38857 * 118.94654 * 205.78681 * 24 23 10 26 26 C 1.38053 * 120.08610 * 179.78406 * 25 24 23 27 27 C 1.38289 * 119.73165 * 359.97438 * 26 25 24 28 28 C 1.37994 * 120.20181 * 0.09268 * 27 26 25 29 29 C 1.38381 * 120.71532 * 25.67968 * 24 23 10 30 30 H 1.08992 * 109.47245 * 300.00383 * 1 2 3 31 31 H 1.09001 * 109.46618 * 60.00341 * 1 2 3 32 32 H 1.08997 * 109.46576 * 180.02562 * 1 2 3 33 33 H 1.08990 * 109.47690 * 239.99882 * 2 1 3 34 34 H 1.09004 * 109.47309 * 299.99840 * 3 2 1 35 35 H 1.09000 * 109.47493 * 59.99393 * 3 2 1 36 36 H 1.08994 * 109.47339 * 179.97438 * 3 2 1 37 37 H 0.97003 * 119.99520 * 0.02562 * 6 4 2 38 38 H 1.08997 * 109.22780 * 328.08180 * 9 7 6 39 39 H 1.09000 * 109.22497 * 208.74083 * 9 7 6 40 40 H 1.09001 * 110.73944 * 325.25373 * 11 10 9 41 41 H 1.08998 * 110.73642 * 88.58218 * 11 10 9 42 42 H 1.08997 * 109.87471 * 262.04570 * 12 11 10 43 43 H 1.08991 * 109.99956 * 140.96595 * 12 11 10 44 44 H 0.96997 * 119.99515 * 179.97438 * 17 16 14 45 45 H 1.08997 * 110.38278 * 217.91182 * 22 13 12 46 46 H 1.09001 * 110.38630 * 95.55080 * 22 13 12 47 47 H 1.08003 * 119.95525 * 359.76708 * 25 24 23 48 48 H 1.08000 * 120.13738 * 179.97438 * 26 25 24 49 49 H 1.07995 * 119.90210 * 180.08178 * 27 26 25 50 50 H 1.08003 * 119.76894 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 1.2442 -1.1708 2.0291 6 7 3.3574 -0.8330 1.4442 7 6 3.8457 -1.5230 2.6406 8 1 3.1803 -2.3578 2.8609 9 6 5.2411 -2.0648 2.3625 10 6 6.2980 -1.0274 2.6975 11 6 6.1826 0.1931 1.7599 12 6 7.6245 0.7470 1.7386 13 7 8.5201 -0.3487 2.1395 14 6 9.8810 -0.2614 2.2646 15 1 10.4416 -1.0958 2.6593 16 6 10.5398 0.8996 1.8839 17 7 9.8489 1.9628 1.5307 18 14 12.4070 0.9531 1.8728 19 1 12.9030 0.6457 0.5071 20 1 12.8659 2.3075 2.2729 21 1 12.9367 -0.0516 2.8295 22 6 7.7101 -1.5578 2.3848 23 8 6.1961 -0.6272 4.0565 24 6 4.9767 -0.1659 4.4514 25 6 4.9061 0.7156 5.5221 26 6 3.6830 1.2012 5.9392 27 6 2.5296 0.8066 5.2862 28 6 2.5991 -0.0704 4.2231 29 6 3.8243 -0.5650 3.7975 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.1299 1.4426 0.0005 37 1 3.9877 -0.4638 0.8060 38 1 5.3198 -2.3297 1.3082 39 1 5.4077 -2.9553 2.9687 40 1 5.8728 -0.1151 0.7613 41 1 5.4919 0.9303 2.1692 42 1 7.7138 1.5749 2.4421 43 1 7.8791 1.0852 0.7343 44 1 10.3094 2.7741 1.2651 45 1 8.1043 -2.1125 3.2362 46 1 7.6905 -2.1884 1.4959 47 1 5.8093 1.0214 6.0293 48 1 3.6271 1.8865 6.7720 49 1 1.5714 1.1859 5.6094 50 1 1.6939 -0.3742 3.7185 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098541571.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:16:36 Heat of formation + Delta-G solvation = -21.809642 kcal Electronic energy + Delta-G solvation = -32118.417456 eV Core-core repulsion = 28111.362329 eV Total energy + Delta-G solvation = -4007.055128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.29138 -39.67825 -38.02625 -35.85371 -35.62994 -34.65033 -32.55296 -31.42353 -30.19946 -29.79771 -29.04774 -27.33331 -26.70286 -24.74962 -23.83785 -23.28661 -22.24389 -21.35377 -20.45941 -19.82555 -19.08874 -17.56957 -17.31866 -16.96869 -16.54607 -15.65589 -15.45870 -15.19129 -14.96794 -14.64146 -14.36104 -14.06118 -14.01731 -13.91853 -13.48725 -13.23140 -13.06035 -12.91082 -12.59424 -12.48007 -12.41256 -12.16583 -12.10574 -11.95739 -11.62218 -11.41471 -11.37094 -11.27400 -11.18889 -10.98174 -10.93008 -10.59516 -10.40254 -10.19753 -10.05367 -9.85311 -9.82089 -9.65135 -9.09549 -8.65924 -8.60841 -7.95536 -6.87906 -5.75309 -3.08111 1.41278 1.64298 2.52925 3.13023 3.38868 3.44256 3.46307 3.61070 4.03232 4.43733 4.46248 4.58956 4.63587 4.72155 4.77238 4.93668 5.00181 5.11725 5.20585 5.21490 5.38469 5.40433 5.42969 5.50314 5.54228 5.57845 5.59660 5.63659 5.71839 5.75797 5.78274 5.86485 5.87515 5.97132 6.02493 6.03441 6.22881 6.27159 6.30271 6.41493 6.45378 6.54279 6.55547 6.69179 6.72185 7.03497 7.42328 7.51301 7.53554 7.77715 7.84629 8.14644 8.20633 9.17515 9.77530 10.42392 11.36955 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013346 B = 0.003567 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.503321 B = 7847.803077 C = 8762.409130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 C -0.146 4.146 4 C 0.518 3.482 5 O -0.541 6.541 6 N -0.720 5.720 7 C 0.199 3.801 8 H 0.097 0.903 9 C -0.148 4.148 10 C 0.102 3.898 11 C -0.165 4.165 12 C 0.184 3.816 13 N -0.600 5.600 14 C -0.229 4.229 15 H 0.079 0.921 16 C -0.005 4.005 17 N -0.920 5.920 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.151 3.849 23 O -0.283 6.283 24 C 0.148 3.852 25 C -0.154 4.154 26 C -0.084 4.084 27 C -0.166 4.166 28 C -0.082 4.082 29 C -0.176 4.176 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.402 0.598 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.048 0.952 44 H 0.252 0.748 45 H 0.051 0.949 46 H 0.042 0.958 47 H 0.130 0.870 48 H 0.124 0.876 49 H 0.117 0.883 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.800 -3.691 -1.103 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.137 4.137 3 C -0.204 4.204 4 C 0.305 3.695 5 O -0.419 6.419 6 N -0.373 5.373 7 C 0.095 3.905 8 H 0.115 0.885 9 C -0.187 4.187 10 C 0.063 3.937 11 C -0.203 4.203 12 C 0.059 3.941 13 N -0.326 5.326 14 C -0.357 4.357 15 H 0.097 0.903 16 C -0.202 4.202 17 N -0.567 5.567 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.025 3.975 23 O -0.196 6.196 24 C 0.101 3.899 25 C -0.172 4.172 26 C -0.102 4.102 27 C -0.185 4.185 28 C -0.100 4.100 29 C -0.178 4.178 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.239 0.761 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.148 0.852 48 H 0.142 0.858 49 H 0.135 0.865 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.977 -3.894 -0.476 18.400 hybrid contribution 1.219 0.384 -0.378 1.333 sum -16.758 -3.510 -0.854 17.143 Atomic orbital electron populations 1.21598 0.92507 1.02683 1.02065 1.21319 0.98332 0.97449 0.96611 1.21806 1.01615 0.93988 1.02983 1.20725 0.82212 0.78976 0.87544 1.90569 1.55477 1.48877 1.46982 1.46513 1.07249 1.58711 1.24778 1.19350 0.95503 0.93163 0.82508 0.88486 1.22058 0.92870 0.99763 1.04000 1.22327 0.97020 0.94170 0.80161 1.23427 1.01932 0.97202 0.97787 1.21136 0.82613 0.90345 0.99993 1.44448 1.02715 1.05140 1.80314 1.19054 0.80365 1.00059 1.36199 0.90321 1.24801 0.98057 0.95957 1.01362 1.69966 1.33373 1.02099 1.51261 0.86109 0.85133 0.76951 0.77648 1.21613 1.21774 1.20592 1.21391 0.86789 0.91201 0.98142 1.86310 1.27988 1.77934 1.27410 1.18834 0.84464 0.92280 0.94286 1.20640 0.98795 0.98480 0.99297 1.20968 0.91859 0.98472 0.98895 1.20957 0.98149 1.01154 0.98204 1.21682 0.97951 0.94944 0.95397 1.19996 0.93152 1.03540 1.01093 0.91941 0.92149 0.92036 0.88559 0.91333 0.91952 0.91873 0.76076 0.88959 0.89320 0.91697 0.91441 0.93704 0.93372 0.93750 0.93029 0.94093 0.85236 0.85849 0.86523 0.83758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 8.48 37.16 0.32 -0.80 16 2 C -0.12 -1.02 3.26 -91.77 -0.30 -1.32 16 3 C -0.15 -1.23 9.09 37.16 0.34 -0.89 16 4 C 0.52 6.09 6.57 -10.98 -0.07 6.01 16 5 O -0.54 -7.81 12.75 5.56 0.07 -7.74 16 6 N -0.72 -8.32 4.64 -55.54 -0.26 -8.58 16 7 C 0.20 2.62 2.47 -69.70 -0.17 2.45 16 8 H 0.10 1.30 7.59 -51.93 -0.39 0.91 16 9 C -0.15 -1.95 4.52 -27.70 -0.13 -2.08 16 10 C 0.10 1.75 0.83 -89.96 -0.07 1.67 16 11 C -0.16 -2.90 4.51 -25.26 -0.11 -3.01 16 12 C 0.18 4.34 5.39 -2.95 -0.02 4.32 16 13 N -0.60 -14.93 3.40 -170.34 -0.58 -15.51 16 14 C -0.23 -6.28 10.26 -15.06 -0.15 -6.44 16 15 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 16 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 17 N -0.92 -26.64 10.35 55.49 0.57 -26.07 16 18 Si 0.91 21.88 29.56 -169.99 -5.02 16.86 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.15 3.00 6.43 -2.90 -0.02 2.98 16 23 O -0.28 -5.39 9.91 -20.45 -0.20 -5.59 16 24 C 0.15 2.50 5.56 -39.30 -0.22 2.28 16 25 C -0.15 -2.44 9.95 -39.42 -0.39 -2.83 16 26 C -0.08 -1.13 10.06 -39.63 -0.40 -1.53 16 27 C -0.17 -2.23 10.03 -39.65 -0.40 -2.63 16 28 C -0.08 -1.19 9.07 -39.46 -0.36 -1.55 16 29 C -0.18 -2.66 5.01 -104.59 -0.52 -3.18 16 30 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.55 7.56 -51.93 -0.39 0.15 16 37 H 0.40 4.27 5.70 -40.82 -0.23 4.03 16 38 H 0.09 1.05 7.96 -51.93 -0.41 0.64 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.06 0.96 6.71 -51.93 -0.35 0.62 16 41 H 0.07 1.19 7.12 -51.93 -0.37 0.82 16 42 H 0.04 1.22 7.55 -51.93 -0.39 0.82 16 43 H 0.05 1.24 7.36 -51.93 -0.38 0.86 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.04 0.75 8.01 -51.93 -0.42 0.34 16 47 H 0.13 2.03 8.06 -52.48 -0.42 1.61 16 48 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 49 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 50 H 0.15 2.16 4.80 -52.48 -0.25 1.91 16 LS Contribution 384.64 15.07 5.80 5.80 Total: -1.00 -31.80 384.64 -10.19 -41.98 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.79 Total: 5.64 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -2.78 Total: -6.78 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.26 Total: -50.16 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.13 Total: -13.33 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.80 -10.19 -41.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098541571.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.171 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds