Wall clock time and date at job start Sat Apr 11 2020 07:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 N 1.46899 * 109.47254 * 300.00134 * 4 2 1 6 6 C 1.46904 * 111.00029 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.46950 * 180.02562 * 6 5 4 8 8 O 1.42904 * 109.47412 * 65.00415 * 7 6 5 9 9 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 10 10 C 1.53037 * 109.46046 * 180.02562 * 9 2 1 11 11 C 1.53201 * 109.31127 * 178.59697 * 10 9 2 12 12 N 1.46921 * 108.76377 * 54.66142 * 11 10 9 13 13 C 1.34779 * 120.63332 * 126.36366 * 12 11 10 14 14 O 1.21284 * 119.99620 * 180.02562 * 13 12 11 15 15 C 1.50692 * 119.99963 * 0.02562 * 13 12 11 16 16 S 1.81002 * 109.47186 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00128 * 180.02562 * 16 15 13 18 18 H 1.08006 * 119.99615 * 359.97438 * 17 16 15 19 19 C 1.38792 * 120.00128 * 179.97438 * 17 16 15 20 20 N 1.31636 * 119.99924 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00098 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47119 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47315 * 120.00047 * 21 19 17 24 24 H 1.48507 * 109.46987 * 240.00339 * 21 19 17 25 25 C 1.46932 * 118.73592 * 306.37486 * 12 11 10 26 26 C 1.53043 * 109.46339 * 59.96767 * 9 2 1 27 27 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 32 32 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 33 33 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 35 35 H 1.00908 * 110.99847 * 56.04959 * 5 4 2 36 36 H 1.08995 * 109.47167 * 300.00240 * 6 5 4 37 37 H 1.09003 * 109.46442 * 60.00214 * 6 5 4 38 38 H 1.09004 * 109.47205 * 185.00123 * 7 6 5 39 39 H 1.09006 * 109.47315 * 305.00021 * 7 6 5 40 40 H 0.96696 * 114.00364 * 180.02562 * 8 7 6 41 41 H 1.09005 * 109.45911 * 299.99767 * 9 2 1 42 42 H 1.08996 * 109.49850 * 298.55996 * 10 9 2 43 43 H 1.08997 * 109.49675 * 58.66461 * 10 9 2 44 44 H 1.08997 * 109.59941 * 294.86415 * 11 10 9 45 45 H 1.09004 * 109.58094 * 174.43573 * 11 10 9 46 46 H 1.08996 * 109.47350 * 300.00895 * 15 13 12 47 47 H 1.09005 * 109.46943 * 60.00571 * 15 13 12 48 48 H 0.96995 * 119.99725 * 179.97438 * 20 19 17 49 49 H 1.09000 * 109.58765 * 293.82873 * 25 12 11 50 50 H 1.09006 * 109.70332 * 173.46858 * 25 12 11 51 51 H 1.08999 * 109.50071 * 301.33691 * 26 9 2 52 52 H 1.08998 * 109.49523 * 61.43916 * 26 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5504 -0.0288 2.4487 6 6 2.0209 -0.6953 3.6703 7 6 1.4913 0.0526 4.8955 8 8 0.0663 -0.0473 4.9354 9 6 2.0401 -0.7211 -1.2492 10 6 3.5704 -0.7215 -1.2486 11 6 4.0774 -1.4747 -2.4826 12 7 3.4749 -0.8767 -3.6818 13 6 4.2485 -0.4572 -4.7026 14 8 3.7389 0.0352 -5.6870 15 6 5.7464 -0.5999 -4.6210 16 16 6.4979 0.0503 -6.1338 17 6 8.1997 -0.2352 -5.7773 18 1 8.4862 -0.6902 -4.8406 19 6 9.1719 0.1247 -6.7001 20 7 8.8226 0.6798 -7.8415 21 14 10.9760 -0.1786 -6.3225 22 1 11.1024 -0.8089 -4.9839 23 1 11.5522 -1.0811 -7.3514 24 1 11.7077 1.1136 -6.3317 25 6 2.0130 -0.7446 -3.7469 26 6 1.5292 0.0001 -2.4986 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2492 35 1 0.5438 0.0412 2.4402 36 1 1.6572 -1.7226 3.6869 37 1 3.1108 -0.6954 3.6872 38 1 1.9118 -0.3877 5.7997 39 1 1.7805 1.1018 4.8339 40 1 -0.3388 0.4054 5.6877 41 1 1.6766 -1.7488 -1.2491 42 1 3.9345 0.3055 -1.2741 43 1 3.9337 -1.2147 -0.3471 44 1 3.7905 -2.5240 -2.4139 45 1 5.1629 -1.3935 -2.5398 46 1 6.1183 -0.0416 -3.7619 47 1 6.0055 -1.6529 -4.5097 48 1 9.5021 0.9316 -8.4862 49 1 1.5578 -1.7344 -3.7814 50 1 1.7341 -0.1829 -4.6385 51 1 0.4394 0.0207 -2.4869 52 1 1.9127 1.0203 -2.5122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101511853.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:16:48 Heat of formation + Delta-G solvation = -100.746102 kcal Electronic energy + Delta-G solvation = -28565.928491 eV Core-core repulsion = 24690.894373 eV Total energy + Delta-G solvation = -3875.034118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.39694 -38.88715 -37.69889 -36.22703 -34.45546 -32.41395 -31.79272 -31.23075 -29.31153 -28.54335 -27.50074 -25.99004 -25.49241 -24.43621 -22.94749 -22.22713 -21.30509 -19.21760 -18.44046 -18.03337 -17.63276 -16.73160 -16.32804 -15.75044 -15.58455 -15.36414 -15.23101 -14.79326 -14.58077 -14.41223 -14.20019 -13.96065 -13.82237 -13.72932 -13.46799 -12.97212 -12.87552 -12.67971 -12.58952 -12.31475 -12.15961 -12.07925 -11.86961 -11.75523 -11.71580 -11.44008 -11.18054 -11.06297 -11.01369 -10.94079 -10.73559 -10.59208 -10.51631 -10.31675 -10.17795 -9.77205 -9.28303 -9.06038 -8.74216 -8.43383 -8.19345 -6.47846 -6.20212 -3.90393 2.99700 3.11428 3.22269 3.27703 3.32248 3.64150 3.77088 3.80744 4.21518 4.39059 4.50363 4.52012 4.66681 4.77452 4.84829 4.86966 4.94071 5.04025 5.06811 5.13353 5.14923 5.22525 5.27859 5.29285 5.35446 5.36977 5.44567 5.53320 5.54855 5.57950 5.63918 5.71470 5.74321 5.77767 5.81084 5.85265 5.91454 5.94817 5.99905 6.07079 6.14515 6.17489 6.20535 6.41646 6.65147 6.73779 7.06163 7.13369 7.60955 7.64364 8.36871 8.62813 9.25144 10.87273 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016484 B = 0.002063 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.162868 B =13568.463028 C =14812.785063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 C -0.136 4.136 4 C 0.066 3.934 5 N -0.685 5.685 6 C 0.058 3.942 7 C 0.075 3.925 8 O -0.577 6.577 9 C -0.074 4.074 10 C -0.134 4.134 11 C 0.108 3.892 12 N -0.618 5.618 13 C 0.535 3.465 14 O -0.519 6.519 15 C -0.150 4.150 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.113 3.887 26 C -0.130 4.130 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.027 0.973 35 H 0.348 0.652 36 H 0.034 0.966 37 H 0.084 0.916 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.380 0.620 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.268 0.732 49 H 0.060 0.940 50 H 0.092 0.908 51 H 0.074 0.926 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.609 -3.554 25.866 31.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.055 4.055 3 C -0.193 4.193 4 C -0.063 4.063 5 N -0.318 5.318 6 C -0.072 4.072 7 C -0.003 4.003 8 O -0.383 6.383 9 C -0.093 4.093 10 C -0.172 4.172 11 C -0.015 4.015 12 N -0.355 5.355 13 C 0.323 3.677 14 O -0.394 6.394 15 C -0.300 4.300 16 S 0.165 5.835 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.010 4.010 26 C -0.168 4.168 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.168 0.832 36 H 0.052 0.948 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.227 0.773 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.110 0.890 51 H 0.092 0.908 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.686 -2.633 23.682 29.674 hybrid contribution 1.209 -1.352 2.041 2.731 sum -16.477 -3.985 25.723 30.806 Atomic orbital electron populations 1.21954 0.94859 1.01466 1.02134 1.20532 0.95297 0.96407 0.93273 1.21847 1.01071 0.94671 1.01706 1.22089 1.00401 0.94628 0.89197 1.60543 1.17395 1.53031 1.00817 1.21978 1.00086 0.95776 0.89310 1.22265 0.80900 1.00072 0.97039 1.86435 1.20257 1.79144 1.52455 1.21132 0.95190 0.99204 0.93804 1.22108 0.95573 1.01939 0.97550 1.21712 0.99082 0.96523 0.84219 1.48088 1.06408 1.62937 1.18032 1.20314 0.88795 0.76709 0.81924 1.90684 1.74887 1.42932 1.30883 1.23545 0.93888 1.05122 1.07483 1.85406 1.02465 1.79593 1.16078 1.22901 0.91399 1.47265 1.06633 0.90926 1.24994 0.99550 0.94611 0.94479 1.70033 1.34054 1.38872 1.07308 0.86123 0.82870 0.78102 0.78431 1.19629 1.20582 1.20574 1.21505 0.80103 1.00215 0.99172 1.22074 1.00710 1.00261 0.93780 0.92412 0.91961 0.93082 0.92616 0.92929 0.91822 0.90611 0.95442 0.83213 0.94758 0.89758 0.93347 0.92565 0.77261 0.91274 0.90736 0.90827 0.91771 0.89334 0.89334 0.89379 0.92263 0.92189 0.89013 0.90755 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 7.79 37.16 0.29 -0.75 16 2 C -0.05 -0.41 0.39 -154.51 -0.06 -0.48 16 3 C -0.14 -1.18 7.61 37.16 0.28 -0.90 16 4 C 0.07 0.49 4.29 -3.83 -0.02 0.47 16 5 N -0.68 -5.11 5.71 -113.78 -0.65 -5.76 16 6 C 0.06 0.38 6.11 -3.82 -0.02 0.36 16 7 C 0.08 0.41 7.39 37.16 0.27 0.69 16 8 O -0.58 -3.56 13.18 -35.23 -0.46 -4.03 16 9 C -0.07 -0.62 1.51 -90.58 -0.14 -0.76 16 10 C -0.13 -1.22 4.65 -26.61 -0.12 -1.35 16 11 C 0.11 1.21 6.34 -3.71 -0.02 1.18 16 12 N -0.62 -8.97 2.97 -172.76 -0.51 -9.49 16 13 C 0.53 10.44 7.72 -10.99 -0.08 10.35 16 14 O -0.52 -12.16 15.28 5.55 0.08 -12.08 16 15 C -0.15 -3.11 4.50 36.00 0.16 -2.94 16 16 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 17 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 18 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 21 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.11 1.40 6.43 -3.71 -0.02 1.37 16 26 C -0.13 -1.27 4.65 -26.61 -0.12 -1.39 16 27 H 0.06 0.41 6.57 -51.93 -0.34 0.06 16 28 H 0.06 0.45 6.40 -51.93 -0.33 0.11 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.52 6.46 -51.93 -0.34 0.19 16 31 H 0.05 0.48 6.46 -51.93 -0.34 0.14 16 32 H 0.06 0.57 7.60 -51.93 -0.39 0.17 16 33 H 0.08 0.58 6.40 -51.93 -0.33 0.25 16 34 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.35 2.75 6.33 -39.29 -0.25 2.50 16 36 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.38 0.76 9.12 45.56 0.42 1.17 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.78 6.51 -51.93 -0.34 0.44 16 43 H 0.07 0.56 6.36 -51.93 -0.33 0.23 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 46 H 0.09 1.70 7.69 -51.92 -0.40 1.30 16 47 H 0.09 1.70 7.94 -51.91 -0.41 1.28 16 48 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.09 1.33 7.01 -51.93 -0.36 0.96 16 51 H 0.07 0.62 6.36 -51.93 -0.33 0.29 16 52 H 0.07 0.81 6.51 -51.93 -0.34 0.47 16 LS Contribution 405.24 15.07 6.11 6.11 Total: -1.00 -34.95 405.24 -9.42 -44.37 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.07 Total: 1.05 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 0.59 Total: -7.15 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -0.43 Total: -40.84 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.38 Total: -16.10 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.95 -9.42 -44.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101511853.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.377 kcal (2) G-P(sol) polarization free energy of solvation -34.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds