Wall clock time and date at job start Sat Apr 11 2020 07:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 N 1.46899 * 109.47254 * 300.00134 * 4 2 1 6 6 C 1.46904 * 111.00029 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.46950 * 180.02562 * 6 5 4 8 8 O 1.42904 * 109.47412 * 65.00415 * 7 6 5 9 9 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 10 10 C 1.53037 * 109.46046 * 180.02562 * 9 2 1 11 11 C 1.53201 * 109.31127 * 178.59697 * 10 9 2 12 12 N 1.46921 * 108.76377 * 54.66142 * 11 10 9 13 13 C 1.34779 * 120.63332 * 126.36366 * 12 11 10 14 14 O 1.21284 * 119.99620 * 180.02562 * 13 12 11 15 15 C 1.50692 * 119.99963 * 0.02562 * 13 12 11 16 16 S 1.81002 * 109.47186 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00128 * 180.02562 * 16 15 13 18 18 H 1.08006 * 119.99615 * 359.97438 * 17 16 15 19 19 C 1.38792 * 120.00128 * 179.97438 * 17 16 15 20 20 N 1.31636 * 119.99924 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00098 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47119 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47315 * 120.00047 * 21 19 17 24 24 H 1.48507 * 109.46987 * 240.00339 * 21 19 17 25 25 C 1.46932 * 118.73592 * 306.37486 * 12 11 10 26 26 C 1.53043 * 109.46339 * 59.96767 * 9 2 1 27 27 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 32 32 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 33 33 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 35 35 H 1.00908 * 110.99847 * 56.04959 * 5 4 2 36 36 H 1.08995 * 109.47167 * 300.00240 * 6 5 4 37 37 H 1.09003 * 109.46442 * 60.00214 * 6 5 4 38 38 H 1.09004 * 109.47205 * 185.00123 * 7 6 5 39 39 H 1.09006 * 109.47315 * 305.00021 * 7 6 5 40 40 H 0.96696 * 114.00364 * 180.02562 * 8 7 6 41 41 H 1.09005 * 109.45911 * 299.99767 * 9 2 1 42 42 H 1.08996 * 109.49850 * 298.55996 * 10 9 2 43 43 H 1.08997 * 109.49675 * 58.66461 * 10 9 2 44 44 H 1.08997 * 109.59941 * 294.86415 * 11 10 9 45 45 H 1.09004 * 109.58094 * 174.43573 * 11 10 9 46 46 H 1.08996 * 109.47350 * 300.00895 * 15 13 12 47 47 H 1.09005 * 109.46943 * 60.00571 * 15 13 12 48 48 H 0.96995 * 119.99725 * 179.97438 * 20 19 17 49 49 H 1.09000 * 109.58765 * 293.82873 * 25 12 11 50 50 H 1.09006 * 109.70332 * 173.46858 * 25 12 11 51 51 H 1.08999 * 109.50071 * 301.33691 * 26 9 2 52 52 H 1.08998 * 109.49523 * 61.43916 * 26 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5504 -0.0288 2.4487 6 6 2.0209 -0.6953 3.6703 7 6 1.4913 0.0526 4.8955 8 8 0.0663 -0.0473 4.9354 9 6 2.0401 -0.7211 -1.2492 10 6 3.5704 -0.7215 -1.2486 11 6 4.0774 -1.4747 -2.4826 12 7 3.4749 -0.8767 -3.6818 13 6 4.2485 -0.4572 -4.7026 14 8 3.7389 0.0352 -5.6870 15 6 5.7464 -0.5999 -4.6210 16 16 6.4979 0.0503 -6.1338 17 6 8.1997 -0.2352 -5.7773 18 1 8.4862 -0.6902 -4.8406 19 6 9.1719 0.1247 -6.7001 20 7 8.8226 0.6798 -7.8415 21 14 10.9760 -0.1786 -6.3225 22 1 11.1024 -0.8089 -4.9839 23 1 11.5522 -1.0811 -7.3514 24 1 11.7077 1.1136 -6.3317 25 6 2.0130 -0.7446 -3.7469 26 6 1.5292 0.0001 -2.4986 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2492 35 1 0.5438 0.0412 2.4402 36 1 1.6572 -1.7226 3.6869 37 1 3.1108 -0.6954 3.6872 38 1 1.9118 -0.3877 5.7997 39 1 1.7805 1.1018 4.8339 40 1 -0.3388 0.4054 5.6877 41 1 1.6766 -1.7488 -1.2491 42 1 3.9345 0.3055 -1.2741 43 1 3.9337 -1.2147 -0.3471 44 1 3.7905 -2.5240 -2.4139 45 1 5.1629 -1.3935 -2.5398 46 1 6.1183 -0.0416 -3.7619 47 1 6.0055 -1.6529 -4.5097 48 1 9.5021 0.9316 -8.4862 49 1 1.5578 -1.7344 -3.7814 50 1 1.7341 -0.1829 -4.6385 51 1 0.4394 0.0207 -2.4869 52 1 1.9127 1.0203 -2.5122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101511853.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:16:47 Heat of formation + Delta-G solvation = -126.391631 kcal Electronic energy + Delta-G solvation = -28567.040565 eV Core-core repulsion = 24690.894373 eV Total energy + Delta-G solvation = -3876.146192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.41561 -39.95967 -38.27609 -37.15060 -35.20216 -34.58854 -32.83866 -32.12141 -30.43031 -29.41058 -28.15438 -27.68451 -26.71988 -25.32165 -23.81768 -22.73300 -22.25656 -20.46775 -19.63721 -19.10085 -18.44715 -18.08957 -17.01775 -16.93561 -16.86901 -16.58498 -16.25266 -15.95614 -15.84792 -15.26007 -15.18514 -14.99899 -14.64913 -14.59636 -14.46608 -14.19824 -14.06179 -13.78559 -13.46808 -13.33164 -13.15914 -13.02737 -12.91799 -12.83074 -12.73560 -12.59942 -12.52765 -12.26471 -12.22611 -11.85705 -11.72513 -11.67492 -11.28582 -11.16225 -11.12599 -10.99462 -10.83806 -10.77468 -10.25853 -9.63701 -9.28566 -8.67824 -8.34958 -6.13443 1.25802 1.41217 1.45997 1.57315 1.58612 2.13753 2.27071 2.99108 3.22413 3.25688 3.48433 3.63517 3.73192 3.82536 3.85914 4.09578 4.17557 4.21165 4.24920 4.28601 4.35680 4.37592 4.39776 4.43590 4.52736 4.54944 4.59463 4.73912 4.78922 4.83826 4.89303 4.91356 4.93864 4.97301 5.00464 5.00774 5.08600 5.15106 5.17585 5.23757 5.34252 5.41526 5.43822 5.54041 5.65261 5.68808 6.12466 6.19702 6.32356 6.51074 6.90839 7.06151 7.16197 8.74608 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016484 B = 0.002063 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.162868 B =13568.463028 C =14812.785063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.046 4.046 3 C -0.132 4.132 4 C 0.070 3.930 5 N -0.690 5.690 6 C 0.055 3.945 7 C 0.077 3.923 8 O -0.596 6.596 9 C -0.068 4.068 10 C -0.128 4.128 11 C 0.100 3.900 12 N -0.604 5.604 13 C 0.531 3.469 14 O -0.570 6.570 15 C -0.122 4.122 16 S -0.154 6.154 17 C -0.544 4.544 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.109 3.891 26 C -0.121 4.121 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.031 0.969 35 H 0.345 0.655 36 H 0.028 0.972 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.397 0.603 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.271 0.729 49 H 0.083 0.917 50 H 0.065 0.935 51 H 0.093 0.907 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.464 -5.139 28.921 34.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.047 4.047 3 C -0.189 4.189 4 C -0.059 4.059 5 N -0.323 5.323 6 C -0.074 4.074 7 C -0.001 4.001 8 O -0.405 6.405 9 C -0.087 4.087 10 C -0.166 4.166 11 C -0.022 4.022 12 N -0.339 5.339 13 C 0.318 3.682 14 O -0.449 6.449 15 C -0.273 4.273 16 S 0.074 5.926 17 C -0.692 4.692 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.179 1.179 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.013 4.013 26 C -0.159 4.159 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.165 0.835 36 H 0.046 0.954 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.246 0.754 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.108 0.892 45 H 0.103 0.897 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.080 0.920 49 H 0.101 0.899 50 H 0.083 0.917 51 H 0.111 0.889 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.573 -4.235 26.810 32.335 hybrid contribution 1.027 -0.875 1.201 1.806 sum -16.546 -5.110 28.011 32.932 Atomic orbital electron populations 1.21926 0.94225 1.01893 1.02128 1.20433 0.95694 0.95450 0.93105 1.21797 1.00485 0.95496 1.01121 1.22036 1.00286 0.94645 0.88967 1.60557 1.17221 1.53291 1.01189 1.22052 1.00481 0.95503 0.89410 1.22257 0.80756 0.99924 0.97164 1.86388 1.20662 1.79646 1.53754 1.21099 0.94577 0.99807 0.93230 1.22076 0.96088 1.01047 0.97351 1.22043 0.98930 0.97964 0.83293 1.48122 1.07155 1.61034 1.17542 1.20135 0.88522 0.76959 0.82540 1.90666 1.75416 1.45666 1.33168 1.23357 0.94563 1.05723 1.03690 1.85598 1.04177 1.81026 1.21829 1.23221 0.91421 1.47394 1.07162 0.89913 1.26150 1.05069 0.93964 0.94059 1.70198 1.35933 1.40058 1.08604 0.84892 0.75804 0.78240 0.78927 1.17928 1.19899 1.19914 1.21703 0.78642 1.01504 0.99494 1.22011 1.01775 0.99026 0.93121 0.92375 0.92084 0.92394 0.93410 0.93753 0.92129 0.90680 0.95103 0.83513 0.95379 0.89188 0.91857 0.92733 0.75367 0.89814 0.92195 0.88510 0.89209 0.89674 0.87697 0.87549 0.91998 0.89856 0.91661 0.88868 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 7.79 71.98 0.56 -1.15 16 2 C -0.05 -0.60 0.39 -52.18 -0.02 -0.62 16 3 C -0.13 -2.13 7.61 71.98 0.55 -1.58 16 4 C 0.07 0.86 4.29 86.30 0.37 1.23 16 5 N -0.69 -8.99 5.71 -513.89 -2.94 -11.92 16 6 C 0.05 0.62 6.11 86.30 0.53 1.15 16 7 C 0.08 0.71 7.39 71.98 0.53 1.24 16 8 O -0.60 -6.37 13.18 -148.98 -1.96 -8.34 16 9 C -0.07 -0.95 1.51 -10.77 -0.02 -0.97 16 10 C -0.13 -2.00 4.65 30.67 0.14 -1.86 16 11 C 0.10 1.96 6.34 86.37 0.55 2.51 16 12 N -0.60 -16.88 2.97 -818.87 -2.43 -19.31 16 13 C 0.53 20.92 7.72 87.65 0.68 21.60 16 14 O -0.57 -27.81 15.28 -3.04 -0.05 -27.85 16 15 C -0.12 -5.06 4.50 71.23 0.32 -4.74 16 16 S -0.15 -8.74 20.57 -56.49 -1.16 -9.90 16 17 C -0.54 -31.46 9.50 67.95 0.65 -30.81 16 18 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 19 C 0.01 0.70 5.49 84.85 0.47 1.17 16 20 N -0.91 -56.58 13.22 21.65 0.29 -56.29 16 21 Si 1.00 43.90 29.55 68.60 2.03 45.92 16 22 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 C 0.11 2.57 6.43 86.36 0.56 3.13 16 26 C -0.12 -2.16 4.65 30.67 0.14 -2.02 16 27 H 0.06 0.70 6.57 -2.39 -0.02 0.69 16 28 H 0.06 0.74 6.40 -2.39 -0.02 0.73 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.84 6.46 -2.39 -0.02 0.83 16 31 H 0.04 0.78 6.46 -2.39 -0.02 0.77 16 32 H 0.06 1.02 7.60 -2.39 -0.02 1.00 16 33 H 0.07 0.94 6.40 -2.39 -0.02 0.93 16 34 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.35 4.83 6.33 -89.69 -0.57 4.26 16 36 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.38 8.14 -2.39 -0.02 0.37 16 39 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 40 H 0.40 0.95 9.12 -74.06 -0.68 0.27 16 41 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.06 1.15 6.51 -2.39 -0.02 1.14 16 43 H 0.10 1.13 6.36 -2.39 -0.02 1.12 16 44 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.08 1.76 5.93 -2.39 -0.01 1.75 16 46 H 0.10 3.97 7.69 -2.40 -0.02 3.95 16 47 H 0.11 3.99 7.94 -2.39 -0.02 3.97 16 48 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 49 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.06 1.93 7.01 -2.38 -0.02 1.91 16 51 H 0.09 1.34 6.36 -2.39 -0.02 1.33 16 52 H 0.05 1.20 6.51 -2.39 -0.02 1.19 16 Total: -1.00 -78.52 405.24 -0.55 -79.06 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -0.32 Total: 20.38 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 6.00 Total: -11.75 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -5.08 Total: -87.52 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -2.01 Total: -36.19 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.16 Total: -9.90 kcal Total: -78.52 -0.55 -79.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101511853.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.330 kcal (2) G-P(sol) polarization free energy of solvation -78.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds