Wall clock time and date at job start Sat Apr 11 2020 07:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47089 * 2 1 4 4 C 1.50701 * 109.47098 * 180.02562 * 3 2 1 5 5 O 1.21278 * 119.99904 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00106 * 180.02562 * 4 3 2 7 7 C 1.46504 * 120.00231 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.42830 * 324.99629 * 7 6 4 9 9 C 1.53167 * 109.42934 * 205.10066 * 7 6 4 10 10 C 1.52553 * 108.44981 * 192.58072 * 9 7 6 11 11 C 1.54452 * 110.15099 * 185.06633 * 10 9 7 12 12 C 1.55035 * 101.52407 * 153.15430 * 11 10 9 13 13 N 1.47491 * 104.91160 * 323.70683 * 12 11 10 14 14 C 1.36939 * 125.66236 * 204.03979 * 13 12 11 15 15 H 1.07997 * 119.99196 * 169.97273 * 14 13 12 16 16 C 1.38806 * 120.00332 * 349.96990 * 14 13 12 17 17 N 1.31618 * 120.00014 * 350.42278 * 16 14 13 18 18 Si 1.86804 * 119.99969 * 170.41474 * 16 14 13 19 19 H 1.48502 * 109.46564 * 94.14449 * 18 16 14 20 20 H 1.48500 * 109.47043 * 214.14282 * 18 16 14 21 21 H 1.48497 * 109.47059 * 334.14492 * 18 16 14 22 22 C 1.47195 * 108.66625 * 24.02024 * 13 12 11 23 23 O 1.41839 * 110.36961 * 62.64804 * 10 9 7 24 24 C 1.35985 * 118.01433 * 313.78158 * 23 10 9 25 25 C 1.39132 * 118.42942 * 194.66757 * 24 23 10 26 26 C 1.37970 * 120.20267 * 180.27939 * 25 24 23 27 27 C 1.38286 * 119.93385 * 0.02562 * 26 25 24 28 28 C 1.38087 * 120.00009 * 359.89257 * 27 26 25 29 29 C 1.38345 * 121.80137 * 14.79240 * 24 23 10 30 30 H 1.09000 * 109.46848 * 299.99605 * 1 2 3 31 31 H 1.09000 * 109.47031 * 60.00000 * 1 2 3 32 32 H 1.09002 * 109.47188 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47165 * 240.00382 * 2 1 3 34 34 H 1.08998 * 109.47241 * 120.00750 * 2 1 3 35 35 H 1.09000 * 109.46953 * 60.00459 * 3 2 1 36 36 H 1.09000 * 109.47184 * 299.99906 * 3 2 1 37 37 H 0.97007 * 120.00212 * 359.97438 * 6 4 3 38 38 H 1.09004 * 109.64331 * 312.27144 * 9 7 6 39 39 H 1.09003 * 109.63998 * 72.89689 * 9 7 6 40 40 H 1.08993 * 111.01227 * 271.21541 * 11 10 9 41 41 H 1.08999 * 111.01302 * 35.09378 * 11 10 9 42 42 H 1.09005 * 110.34674 * 204.84741 * 12 11 10 43 43 H 1.09000 * 110.44044 * 82.61752 * 12 11 10 44 44 H 0.97000 * 119.99985 * 179.97438 * 17 16 14 45 45 H 1.09002 * 109.90916 * 239.04484 * 22 13 12 46 46 H 1.09002 * 110.06956 * 117.86372 * 22 13 12 47 47 H 1.08003 * 119.89566 * 0.31029 * 25 24 23 48 48 H 1.08008 * 120.03454 * 180.02562 * 26 25 24 49 49 H 1.08002 * 120.00242 * 179.91759 * 27 26 25 50 50 H 1.08002 * 119.82570 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2209 2.6096 -0.0002 7 6 5.6859 2.6097 -0.0014 8 1 6.0490 1.7672 0.5873 9 6 6.1959 3.9172 0.6120 10 6 7.6882 4.0381 0.3193 11 6 8.2707 5.2803 1.0286 12 6 9.7516 4.8626 1.2185 13 7 9.7043 3.4164 1.5042 14 6 10.6600 2.7042 2.1786 15 1 10.4626 1.6859 2.4791 16 6 11.8822 3.2912 2.4759 17 7 12.1974 4.4566 1.9518 18 14 13.0796 2.4270 3.6201 19 1 14.0396 1.6263 2.8186 20 1 13.8213 3.4381 4.4156 21 1 12.3297 1.5299 4.5354 22 6 8.4592 2.8660 0.9445 23 8 7.9127 4.1108 -1.0793 24 6 7.2589 3.2254 -1.8780 25 6 7.6913 3.0740 -3.1918 26 6 7.0509 2.1901 -4.0357 27 6 5.9756 1.4525 -3.5753 28 6 5.5452 1.5993 -2.2715 29 6 6.1853 2.4838 -1.4184 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.7359 3.4498 0.0001 38 1 5.6662 4.7608 0.1692 39 1 6.0339 3.9039 1.6898 40 1 8.1919 6.1644 0.3960 41 1 7.7846 5.4451 1.9902 42 1 10.1925 5.4007 2.0577 43 1 10.3200 5.0508 0.3077 44 1 13.0514 4.8669 2.1598 45 1 7.8649 2.4115 1.7372 46 1 8.6888 2.1232 0.1806 47 1 8.5311 3.6497 -3.5519 48 1 7.3891 2.0744 -5.0549 49 1 5.4726 0.7613 -4.2354 50 1 4.7048 1.0222 -1.9150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111530347.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:16:58 Heat of formation + Delta-G solvation = -26.789800 kcal Electronic energy + Delta-G solvation = -31250.994921 eV Core-core repulsion = 27243.723837 eV Total energy + Delta-G solvation = -4007.271083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.19680 -39.68319 -38.03436 -35.91747 -35.66637 -34.56015 -32.72831 -31.61387 -30.20068 -30.03320 -28.74709 -28.25852 -26.29313 -24.67319 -23.59922 -22.51517 -22.09768 -21.50688 -20.53379 -20.33672 -18.93782 -17.60125 -17.24036 -17.03886 -16.20930 -15.95270 -15.79629 -15.42773 -14.87461 -14.69001 -14.47234 -14.26185 -14.06326 -13.90687 -13.76707 -13.39592 -13.18839 -12.88637 -12.79966 -12.38674 -12.33931 -12.11496 -12.03145 -11.74839 -11.68197 -11.48006 -11.36372 -11.22117 -11.02648 -10.97601 -10.84448 -10.74866 -10.34986 -10.21328 -10.13273 -9.94246 -9.78687 -9.67146 -9.22928 -8.67908 -8.58034 -7.91969 -6.82057 -5.74755 -3.07676 1.42427 1.62273 2.48615 2.99286 3.40473 3.46099 3.48306 3.51132 3.95665 4.43036 4.47950 4.57487 4.65523 4.66280 4.73355 4.85149 5.03943 5.10504 5.15886 5.17887 5.20666 5.30109 5.36326 5.44618 5.45252 5.47060 5.53142 5.58674 5.69120 5.70431 5.75471 5.85911 5.92260 5.96469 6.02837 6.13256 6.15636 6.24928 6.38020 6.38591 6.43827 6.56756 6.60679 6.65562 6.69111 7.00372 7.33262 7.45585 7.59739 7.77475 7.85167 8.08093 8.23769 9.18405 9.79396 10.46336 11.38423 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.003104 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.871798 B = 9018.236705 C = 9987.955270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.509 3.491 5 O -0.533 6.533 6 N -0.721 5.721 7 C 0.191 3.809 8 H 0.104 0.896 9 C -0.144 4.144 10 C 0.111 3.889 11 C -0.132 4.132 12 C 0.175 3.825 13 N -0.598 5.598 14 C -0.230 4.230 15 H 0.076 0.924 16 C -0.006 4.006 17 N -0.917 5.917 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.122 3.878 23 O -0.291 6.291 24 C 0.155 3.845 25 C -0.156 4.156 26 C -0.083 4.083 27 C -0.168 4.168 28 C -0.071 4.071 29 C -0.179 4.179 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.400 0.600 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.033 0.967 44 H 0.253 0.747 45 H 0.035 0.965 46 H 0.029 0.971 47 H 0.130 0.870 48 H 0.124 0.876 49 H 0.118 0.882 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.671 -0.706 -7.472 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.181 4.181 4 C 0.296 3.704 5 O -0.410 6.410 6 N -0.372 5.372 7 C 0.086 3.914 8 H 0.122 0.878 9 C -0.183 4.183 10 C 0.072 3.928 11 C -0.170 4.170 12 C 0.050 3.950 13 N -0.325 5.325 14 C -0.358 4.358 15 H 0.094 0.906 16 C -0.202 4.202 17 N -0.564 5.564 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.206 1.206 22 C -0.005 4.005 23 O -0.205 6.205 24 C 0.108 3.892 25 C -0.175 4.175 26 C -0.101 4.101 27 C -0.186 4.186 28 C -0.089 4.089 29 C -0.181 4.181 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.235 0.765 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.051 0.949 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.148 0.852 48 H 0.142 0.858 49 H 0.136 0.864 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.882 -1.287 -7.410 23.138 hybrid contribution 0.410 -0.159 0.530 0.689 sum -21.472 -1.446 -6.880 22.593 Atomic orbital electron populations 1.21795 0.95522 1.01978 1.01718 1.21287 0.95198 0.94626 1.03716 1.21742 0.91625 1.00337 1.04403 1.20807 0.90367 0.83713 0.75469 1.90743 1.70356 1.31167 1.48694 1.46125 1.06680 1.08829 1.75572 1.19703 0.79330 0.99612 0.92716 0.87830 1.22326 0.96490 0.96722 1.02720 1.22237 0.92510 0.99521 0.78486 1.23062 1.00767 0.94660 0.98557 1.21466 0.88560 0.84537 1.00425 1.44478 1.19023 1.04338 1.64632 1.19013 0.92555 0.96744 1.27486 0.90611 1.24820 0.96969 0.97669 1.00785 1.69954 1.22688 1.17624 1.46131 0.86122 0.80978 0.78371 0.80418 1.21572 1.21566 1.20558 1.21734 0.89590 0.93431 0.95717 1.85933 1.64812 1.51862 1.17859 1.18800 0.90287 0.89262 0.90801 1.20590 1.02422 1.02381 0.92085 1.20896 0.95105 0.95017 0.99082 1.20939 0.99280 1.02210 0.96177 1.21123 0.99156 0.95656 0.92960 1.20059 0.98889 1.02042 0.97108 0.92697 0.92729 0.92401 0.91195 0.91120 0.88864 0.88923 0.76526 0.90221 0.88894 0.90741 0.90097 0.90956 0.94887 0.93656 0.94767 0.95282 0.85217 0.85777 0.86435 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.11 -0.88 5.22 -26.73 -0.14 -1.02 16 3 C -0.14 -1.01 5.70 -27.88 -0.16 -1.17 16 4 C 0.51 5.68 6.35 -10.99 -0.07 5.61 16 5 O -0.53 -8.19 13.94 5.56 0.08 -8.11 16 6 N -0.72 -7.51 4.85 -54.81 -0.27 -7.78 16 7 C 0.19 2.66 2.26 -68.96 -0.16 2.50 16 8 H 0.10 1.71 6.87 -51.93 -0.36 1.36 16 9 C -0.14 -1.94 4.33 -26.87 -0.12 -2.06 16 10 C 0.11 1.99 0.80 -89.78 -0.07 1.91 16 11 C -0.13 -2.40 6.22 -24.89 -0.15 -2.56 16 12 C 0.17 4.24 5.43 -2.42 -0.01 4.22 16 13 N -0.60 -15.59 3.40 -170.25 -0.58 -16.17 16 14 C -0.23 -6.54 10.24 -15.06 -0.15 -6.69 16 15 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 16 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 17 N -0.92 -27.10 10.68 55.49 0.59 -26.51 16 18 Si 0.91 22.32 29.56 -169.99 -5.03 17.30 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 C 0.12 2.65 5.66 -3.36 -0.02 2.63 16 23 O -0.29 -5.47 9.70 -19.68 -0.19 -5.66 16 24 C 0.15 2.64 6.03 -39.21 -0.24 2.40 16 25 C -0.16 -2.42 9.94 -39.35 -0.39 -2.81 16 26 C -0.08 -1.10 10.04 -39.66 -0.40 -1.50 16 27 C -0.17 -2.23 10.04 -39.62 -0.40 -2.63 16 28 C -0.07 -1.04 9.06 -39.52 -0.36 -1.39 16 29 C -0.18 -2.78 5.52 -104.43 -0.58 -3.36 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.63 8.10 -51.92 -0.42 0.21 16 34 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.40 2.93 8.57 -40.82 -0.35 2.58 16 38 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 39 H 0.09 1.16 8.10 -51.93 -0.42 0.74 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.08 1.32 7.98 -51.93 -0.41 0.91 16 42 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 43 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.03 0.72 7.42 -51.93 -0.39 0.34 16 46 H 0.03 0.69 7.71 -51.93 -0.40 0.29 16 47 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 48 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 49 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 50 H 0.13 1.83 4.66 -52.49 -0.24 1.59 16 LS Contribution 391.40 15.07 5.90 5.90 Total: -1.00 -33.65 391.40 -10.59 -44.24 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.96 Total: 3.48 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -3.14 Total: -6.69 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.25 Total: -50.46 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.11 Total: -13.77 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.65 -10.59 -44.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111530347.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.455 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds