Wall clock time and date at job start Sat Apr 11 2020 07:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47089 * 2 1 4 4 C 1.50701 * 109.47098 * 180.02562 * 3 2 1 5 5 O 1.21278 * 119.99904 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00106 * 180.02562 * 4 3 2 7 7 C 1.46504 * 120.00231 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.42830 * 324.99629 * 7 6 4 9 9 C 1.53167 * 109.42934 * 205.10066 * 7 6 4 10 10 C 1.52553 * 108.44981 * 192.58072 * 9 7 6 11 11 C 1.54452 * 110.15099 * 185.06633 * 10 9 7 12 12 C 1.55035 * 101.52407 * 153.15430 * 11 10 9 13 13 N 1.47491 * 104.91160 * 323.70683 * 12 11 10 14 14 C 1.36939 * 125.66236 * 204.03979 * 13 12 11 15 15 H 1.07997 * 119.99196 * 169.97273 * 14 13 12 16 16 C 1.38806 * 120.00332 * 349.96990 * 14 13 12 17 17 N 1.31618 * 120.00014 * 350.42278 * 16 14 13 18 18 Si 1.86804 * 119.99969 * 170.41474 * 16 14 13 19 19 H 1.48502 * 109.46564 * 94.14449 * 18 16 14 20 20 H 1.48500 * 109.47043 * 214.14282 * 18 16 14 21 21 H 1.48497 * 109.47059 * 334.14492 * 18 16 14 22 22 C 1.47195 * 108.66625 * 24.02024 * 13 12 11 23 23 O 1.41839 * 110.36961 * 62.64804 * 10 9 7 24 24 C 1.35985 * 118.01433 * 313.78158 * 23 10 9 25 25 C 1.39132 * 118.42942 * 194.66757 * 24 23 10 26 26 C 1.37970 * 120.20267 * 180.27939 * 25 24 23 27 27 C 1.38286 * 119.93385 * 0.02562 * 26 25 24 28 28 C 1.38087 * 120.00009 * 359.89257 * 27 26 25 29 29 C 1.38345 * 121.80137 * 14.79240 * 24 23 10 30 30 H 1.09000 * 109.46848 * 299.99605 * 1 2 3 31 31 H 1.09000 * 109.47031 * 60.00000 * 1 2 3 32 32 H 1.09002 * 109.47188 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47165 * 240.00382 * 2 1 3 34 34 H 1.08998 * 109.47241 * 120.00750 * 2 1 3 35 35 H 1.09000 * 109.46953 * 60.00459 * 3 2 1 36 36 H 1.09000 * 109.47184 * 299.99906 * 3 2 1 37 37 H 0.97007 * 120.00212 * 359.97438 * 6 4 3 38 38 H 1.09004 * 109.64331 * 312.27144 * 9 7 6 39 39 H 1.09003 * 109.63998 * 72.89689 * 9 7 6 40 40 H 1.08993 * 111.01227 * 271.21541 * 11 10 9 41 41 H 1.08999 * 111.01302 * 35.09378 * 11 10 9 42 42 H 1.09005 * 110.34674 * 204.84741 * 12 11 10 43 43 H 1.09000 * 110.44044 * 82.61752 * 12 11 10 44 44 H 0.97000 * 119.99985 * 179.97438 * 17 16 14 45 45 H 1.09002 * 109.90916 * 239.04484 * 22 13 12 46 46 H 1.09002 * 110.06956 * 117.86372 * 22 13 12 47 47 H 1.08003 * 119.89566 * 0.31029 * 25 24 23 48 48 H 1.08008 * 120.03454 * 180.02562 * 26 25 24 49 49 H 1.08002 * 120.00242 * 179.91759 * 27 26 25 50 50 H 1.08002 * 119.82570 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2209 2.6096 -0.0002 7 6 5.6859 2.6097 -0.0014 8 1 6.0490 1.7672 0.5873 9 6 6.1959 3.9172 0.6120 10 6 7.6882 4.0381 0.3193 11 6 8.2707 5.2803 1.0286 12 6 9.7516 4.8626 1.2185 13 7 9.7043 3.4164 1.5042 14 6 10.6600 2.7042 2.1786 15 1 10.4626 1.6859 2.4791 16 6 11.8822 3.2912 2.4759 17 7 12.1974 4.4566 1.9518 18 14 13.0796 2.4270 3.6201 19 1 14.0396 1.6263 2.8186 20 1 13.8213 3.4381 4.4156 21 1 12.3297 1.5299 4.5354 22 6 8.4592 2.8660 0.9445 23 8 7.9127 4.1108 -1.0793 24 6 7.2589 3.2254 -1.8780 25 6 7.6913 3.0740 -3.1918 26 6 7.0509 2.1901 -4.0357 27 6 5.9756 1.4525 -3.5753 28 6 5.5452 1.5993 -2.2715 29 6 6.1853 2.4838 -1.4184 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.7359 3.4498 0.0001 38 1 5.6662 4.7608 0.1692 39 1 6.0339 3.9039 1.6898 40 1 8.1919 6.1644 0.3960 41 1 7.7846 5.4451 1.9902 42 1 10.1925 5.4007 2.0577 43 1 10.3200 5.0508 0.3077 44 1 13.0514 4.8669 2.1598 45 1 7.8649 2.4115 1.7372 46 1 8.6888 2.1232 0.1806 47 1 8.5311 3.6497 -3.5519 48 1 7.3891 2.0744 -5.0549 49 1 5.4726 0.7613 -4.2354 50 1 4.7048 1.0222 -1.9150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111530347.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:16:57 Heat of formation + Delta-G solvation = -47.956854 kcal Electronic energy + Delta-G solvation = -31251.912793 eV Core-core repulsion = 27243.723837 eV Total energy + Delta-G solvation = -4008.188956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.41518 -40.70763 -39.36072 -37.46315 -36.77082 -35.23134 -34.51104 -32.84792 -31.78994 -31.25379 -30.30953 -29.01862 -27.90826 -26.31316 -24.85074 -23.49852 -23.39006 -22.60982 -22.14500 -21.31583 -20.17037 -19.04149 -18.74606 -18.18019 -17.28906 -17.18083 -16.80350 -16.74212 -16.48603 -16.20721 -15.63942 -15.54690 -15.29649 -15.19866 -14.95097 -14.49597 -14.27297 -14.16946 -14.00430 -13.90760 -13.53796 -13.33506 -13.15069 -12.96773 -12.84487 -12.76933 -12.64091 -12.53361 -12.32150 -12.21368 -12.03590 -12.00423 -11.97102 -11.83465 -11.59343 -11.52217 -11.43314 -10.84938 -10.71305 -10.21757 -9.80723 -9.14681 -8.94233 -7.92992 -5.29049 0.29831 0.44218 1.43072 1.44540 1.54748 1.63676 2.08100 2.24482 2.45176 2.80990 3.25333 3.34886 3.46781 3.60779 3.66965 3.80957 3.82429 3.94969 4.03024 4.06139 4.15730 4.16888 4.22060 4.43701 4.48496 4.51770 4.56568 4.59983 4.64922 4.73507 4.74802 4.79050 4.80375 4.91465 4.95201 4.96733 5.01948 5.04152 5.26064 5.30723 5.31914 5.35032 5.37712 5.48696 5.51792 5.53509 5.57665 5.68343 5.88002 6.14096 6.55327 6.55609 7.02583 7.27195 7.68020 8.34681 9.18843 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.003104 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.871798 B = 9018.236705 C = 9987.955270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.131 4.131 4 C 0.506 3.494 5 O -0.581 6.581 6 N -0.706 5.706 7 C 0.196 3.804 8 H 0.072 0.928 9 C -0.131 4.131 10 C 0.118 3.882 11 C -0.114 4.114 12 C 0.179 3.821 13 N -0.619 5.619 14 C -0.251 4.251 15 H 0.074 0.926 16 C -0.059 4.059 17 N -0.945 5.945 18 Si 0.979 3.021 19 H -0.288 1.288 20 H -0.286 1.286 21 H -0.269 1.269 22 C 0.122 3.878 23 O -0.313 6.313 24 C 0.124 3.876 25 C -0.173 4.173 26 C -0.078 4.078 27 C -0.163 4.163 28 C -0.081 4.081 29 C -0.184 4.184 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.420 0.580 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.044 0.956 43 H -0.008 1.008 44 H 0.251 0.749 45 H 0.043 0.957 46 H 0.000 1.000 47 H 0.128 0.872 48 H 0.157 0.843 49 H 0.146 0.854 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.729 -0.342 -7.824 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.170 4.170 4 C 0.295 3.705 5 O -0.461 6.461 6 N -0.358 5.358 7 C 0.091 3.909 8 H 0.090 0.910 9 C -0.169 4.169 10 C 0.079 3.921 11 C -0.152 4.152 12 C 0.055 3.945 13 N -0.346 5.346 14 C -0.380 4.380 15 H 0.091 0.909 16 C -0.253 4.253 17 N -0.593 5.593 18 Si 0.807 3.193 19 H -0.215 1.215 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.004 4.004 23 O -0.227 6.227 24 C 0.078 3.922 25 C -0.191 4.191 26 C -0.096 4.096 27 C -0.181 4.181 28 C -0.099 4.099 29 C -0.186 4.186 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.257 0.743 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.115 0.885 41 H 0.126 0.874 42 H 0.062 0.938 43 H 0.010 0.990 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.018 0.982 47 H 0.146 0.854 48 H 0.174 0.826 49 H 0.164 0.836 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -24.996 -0.903 -7.772 26.192 hybrid contribution 1.378 -0.378 0.529 1.524 sum -23.617 -1.282 -7.244 24.736 Atomic orbital electron populations 1.21753 0.93610 1.02290 1.02807 1.21269 0.96764 0.94970 1.01953 1.21783 0.88121 1.00235 1.06886 1.21580 0.91971 0.82905 0.74053 1.90729 1.71598 1.32929 1.50865 1.45935 1.05084 1.09836 1.74982 1.19396 0.81439 0.98641 0.91465 0.91014 1.22251 0.93096 0.97571 1.03970 1.22107 0.94795 0.96945 0.78258 1.22944 0.96162 0.95568 1.00530 1.21244 0.92329 0.83768 0.97205 1.44793 1.19831 1.05334 1.64617 1.19352 0.93635 0.97065 1.27925 0.90858 1.25675 0.98687 0.98550 1.02358 1.70156 1.22922 1.18965 1.47247 0.85073 0.78504 0.77368 0.78402 1.21525 1.21226 1.19324 1.21845 0.88644 0.94722 0.95162 1.85897 1.65973 1.52705 1.18123 1.19090 0.91332 0.90450 0.91298 1.20848 1.02886 1.03214 0.92184 1.21246 0.94463 0.93669 1.00178 1.21327 0.98855 1.01866 0.96003 1.21284 0.99443 0.95572 0.93626 1.20222 0.98539 1.01867 0.97962 0.91634 0.91526 0.92600 0.92902 0.93143 0.86215 0.86251 0.74254 0.87074 0.87239 0.88488 0.87393 0.93765 0.98962 0.94016 0.93933 0.98209 0.85379 0.82564 0.83581 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.66 16 2 C -0.11 -1.61 5.22 30.59 0.16 -1.45 16 3 C -0.13 -1.49 5.70 29.85 0.17 -1.32 16 4 C 0.51 10.46 6.35 87.66 0.56 11.01 16 5 O -0.58 -17.88 13.94 -3.02 -0.04 -17.93 16 6 N -0.71 -13.10 4.85 -445.72 -2.16 -15.26 16 7 C 0.20 5.29 2.26 44.32 0.10 5.39 16 8 H 0.07 2.42 6.87 -2.38 -0.02 2.41 16 9 C -0.13 -3.25 4.33 30.50 0.13 -3.11 16 10 C 0.12 4.17 0.80 -10.25 -0.01 4.16 16 11 C -0.11 -4.06 6.22 31.78 0.20 -3.86 16 12 C 0.18 9.05 5.43 86.89 0.47 9.52 16 13 N -0.62 -33.59 3.40 -692.56 -2.36 -35.94 16 14 C -0.25 -14.80 10.24 84.03 0.86 -13.94 16 15 H 0.07 4.22 7.85 -2.91 -0.02 4.20 16 16 C -0.06 -3.45 5.40 84.86 0.46 -3.00 16 17 N -0.95 -58.03 10.68 21.65 0.23 -57.80 16 18 Si 0.98 46.92 29.56 68.60 2.03 48.95 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 C 0.12 5.49 5.66 86.44 0.49 5.98 16 23 O -0.31 -11.90 9.70 -93.34 -0.91 -12.81 16 24 C 0.12 4.24 6.03 22.51 0.14 4.37 16 25 C -0.17 -5.34 9.94 22.42 0.22 -5.11 16 26 C -0.08 -1.92 10.04 22.22 0.22 -1.70 16 27 C -0.16 -3.99 10.04 22.25 0.22 -3.76 16 28 C -0.08 -2.28 9.06 22.31 0.20 -2.08 16 29 C -0.18 -5.62 5.52 -19.74 -0.11 -5.73 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.05 0.93 8.10 -2.38 -0.02 0.91 16 34 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 35 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.42 4.57 8.57 -92.70 -0.79 3.77 16 38 H 0.11 2.12 8.09 -2.38 -0.02 2.10 16 39 H 0.11 2.39 8.10 -2.39 -0.02 2.37 16 40 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.11 3.27 7.98 -2.39 -0.02 3.25 16 42 H 0.04 2.43 6.94 -2.38 -0.02 2.42 16 43 H -0.01 -0.44 8.07 -2.39 -0.02 -0.46 16 44 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 45 H 0.04 1.83 7.42 -2.39 -0.02 1.81 16 46 H 0.00 0.00 7.71 -2.39 -0.02 -0.02 16 47 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 48 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 49 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 50 H 0.13 3.58 4.66 -2.91 -0.01 3.57 16 Total: -1.00 -78.96 391.40 2.14 -76.81 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.15 Total: 19.27 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 5.20 Total: -5.29 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -4.29 Total: -109.00 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.95 Total: -30.73 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -78.96 2.14 -76.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111530347.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.857 kcal (2) G-P(sol) polarization free energy of solvation -78.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds