Wall clock time and date at job start Sat Apr 11 2020 07:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46706 * 2 1 4 4 C 1.50710 * 109.46663 * 180.02562 * 3 2 1 5 5 O 1.21276 * 120.00166 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99667 * 180.02562 * 4 3 2 7 7 C 1.46497 * 119.99623 * 180.02562 * 6 4 3 8 8 H 1.08995 * 108.88621 * 33.62841 * 7 6 4 9 9 C 1.52249 * 108.90207 * 152.16596 * 7 6 4 10 10 C 1.51842 * 110.79419 * 88.12228 * 9 7 6 11 11 C 1.54330 * 110.73305 * 180.91696 * 10 9 7 12 12 C 1.54470 * 102.87659 * 152.94406 * 11 10 9 13 13 N 1.47091 * 107.29511 * 338.56711 * 12 11 10 14 14 C 1.36937 * 125.63236 * 178.99002 * 13 12 11 15 15 H 1.07996 * 120.00418 * 179.97438 * 14 13 12 16 16 C 1.38817 * 119.99820 * 359.96362 * 14 13 12 17 17 N 1.31620 * 119.99936 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99865 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47099 * 60.00461 * 18 16 14 20 20 H 1.48505 * 109.46923 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47556 * 299.99997 * 18 16 14 22 22 C 1.47578 * 108.73969 * 358.98146 * 13 12 11 23 23 O 1.42016 * 110.77435 * 57.66096 * 10 9 7 24 24 C 1.36213 * 116.08372 * 305.46095 * 23 10 9 25 25 C 1.38872 * 118.94820 * 205.43784 * 24 23 10 26 26 C 1.38068 * 120.09274 * 179.69869 * 25 24 23 27 27 C 1.38295 * 119.73561 * 0.02562 * 26 25 24 28 28 C 1.37985 * 120.18790 * 0.08254 * 27 26 25 29 29 C 1.38369 * 120.73666 * 25.28564 * 24 23 10 30 30 H 1.09000 * 109.47529 * 59.99745 * 1 2 3 31 31 H 1.09001 * 109.47254 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46701 * 299.99472 * 1 2 3 33 33 H 1.08997 * 109.47090 * 240.00759 * 2 1 3 34 34 H 1.09000 * 109.47529 * 120.00255 * 2 1 3 35 35 H 1.09002 * 109.47109 * 60.00778 * 3 2 1 36 36 H 1.08998 * 109.47851 * 300.00379 * 3 2 1 37 37 H 0.97003 * 119.99977 * 359.97438 * 6 4 3 38 38 H 1.08998 * 109.20972 * 208.46301 * 9 7 6 39 39 H 1.09004 * 109.21273 * 327.83075 * 9 7 6 40 40 H 1.09001 * 110.73493 * 271.29481 * 11 10 9 41 41 H 1.09001 * 110.73048 * 34.42197 * 11 10 9 42 42 H 1.09007 * 109.87571 * 97.98648 * 12 11 10 43 43 H 1.08991 * 109.88233 * 218.98251 * 12 11 10 44 44 H 0.96998 * 120.00138 * 179.97438 * 17 16 14 45 45 H 1.09005 * 110.37792 * 264.47281 * 22 13 12 46 46 H 1.09000 * 110.37532 * 142.12513 * 22 13 12 47 47 H 1.07997 * 119.95505 * 359.71816 * 25 24 23 48 48 H 1.07998 * 120.12970 * 180.28549 * 26 25 24 49 49 H 1.08000 * 119.90153 * 180.10498 * 27 26 25 50 50 H 1.08003 * 119.76394 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1534 0.3923 -0.0015 6 7 4.2208 2.6098 -0.0002 7 6 5.6858 2.6098 -0.0014 8 1 6.0381 1.7516 -0.5735 9 6 6.1785 3.8841 -0.6733 10 6 6.3099 5.0100 0.3370 11 6 6.7875 6.3071 -0.3496 12 6 6.2100 7.4120 0.5624 13 7 5.0911 6.8201 1.3116 14 6 4.3244 7.4669 2.2438 15 1 3.5218 6.9425 2.7409 16 6 4.5790 8.7967 2.5501 17 7 5.5570 9.4360 1.9441 18 14 3.5337 9.6788 3.8223 19 1 3.6499 8.9814 5.1281 20 1 4.0052 11.0798 3.9651 21 1 2.1147 9.6769 3.3845 22 6 4.9310 5.4142 0.8926 23 8 7.1920 4.6434 1.3879 24 6 6.8976 3.4842 2.0399 25 6 7.3332 3.3197 3.3482 26 6 7.0427 2.1568 4.0335 27 6 6.3171 1.1571 3.4115 28 6 5.8861 1.3194 2.1108 29 6 6.1737 2.4849 1.4139 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6765 1.9565 -0.8899 37 1 3.7358 3.4499 0.0001 38 1 7.1504 3.6962 -1.1296 39 1 5.4698 4.1786 -1.4474 40 1 7.8763 6.3542 -0.3707 41 1 6.3798 6.3827 -1.3576 42 1 6.9769 7.7595 1.2547 43 1 5.8538 8.2446 -0.0441 44 1 5.7347 10.3653 2.1578 45 1 4.1705 5.3339 0.1158 46 1 4.6687 4.7909 1.7475 47 1 7.8997 4.1025 3.8305 48 1 7.3772 2.0301 5.0525 49 1 6.0870 0.2471 3.9456 50 1 5.3203 0.5341 1.6316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111530348.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:02 Heat of formation + Delta-G solvation = -26.319628 kcal Electronic energy + Delta-G solvation = -31844.881472 eV Core-core repulsion = 27837.630777 eV Total energy + Delta-G solvation = -4007.250695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.21371 -39.49842 -38.00562 -35.85183 -35.60571 -34.44279 -32.66280 -31.60814 -30.23894 -29.90935 -28.75949 -28.07116 -26.58988 -24.64895 -23.52151 -22.46006 -22.20355 -21.29259 -20.48068 -20.04254 -19.04223 -17.53399 -17.24856 -16.86622 -16.53408 -15.92505 -15.51011 -15.16687 -14.95126 -14.66231 -14.38147 -14.15358 -14.01270 -13.93011 -13.54895 -13.30939 -13.16966 -12.98617 -12.71235 -12.39332 -12.12270 -12.11122 -11.97232 -11.91496 -11.58469 -11.35822 -11.33289 -11.25601 -10.96086 -10.90981 -10.90473 -10.60728 -10.35388 -10.25075 -10.11326 -9.85119 -9.81205 -9.66952 -9.08590 -8.63478 -8.61734 -7.91983 -6.88811 -5.75030 -3.08901 1.45000 1.67906 2.59541 3.18488 3.38044 3.42729 3.43735 3.62141 4.08182 4.42857 4.55291 4.65449 4.67259 4.75070 4.83648 4.95391 5.04614 5.17723 5.24705 5.28453 5.32456 5.41741 5.43145 5.46863 5.49816 5.53414 5.58187 5.62536 5.74470 5.81184 5.84524 5.90056 5.92905 5.97576 6.07659 6.12963 6.23697 6.29524 6.34868 6.37955 6.45961 6.48283 6.57856 6.71977 6.74993 7.05908 7.46909 7.49168 7.56889 7.78350 7.85853 8.19095 8.20796 9.16864 9.76539 10.41092 11.36601 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009559 B = 0.003934 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.577325 B = 7115.427652 C = 8095.079777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.144 4.144 4 C 0.515 3.485 5 O -0.544 6.544 6 N -0.722 5.722 7 C 0.197 3.803 8 H 0.099 0.901 9 C -0.148 4.148 10 C 0.100 3.900 11 C -0.131 4.131 12 C 0.180 3.820 13 N -0.596 5.596 14 C -0.230 4.230 15 H 0.076 0.924 16 C -0.004 4.004 17 N -0.920 5.920 18 Si 0.912 3.088 19 H -0.285 1.285 20 H -0.289 1.289 21 H -0.285 1.285 22 C 0.122 3.878 23 O -0.286 6.286 24 C 0.151 3.849 25 C -0.151 4.151 26 C -0.084 4.084 27 C -0.166 4.166 28 C -0.079 4.079 29 C -0.177 4.177 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.404 0.596 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.253 0.747 45 H 0.024 0.976 46 H 0.044 0.956 47 H 0.130 0.870 48 H 0.124 0.876 49 H 0.117 0.883 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.513 -16.178 -5.077 17.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C -0.184 4.184 4 C 0.302 3.698 5 O -0.423 6.423 6 N -0.375 5.375 7 C 0.093 3.907 8 H 0.117 0.883 9 C -0.186 4.186 10 C 0.061 3.939 11 C -0.170 4.170 12 C 0.055 3.945 13 N -0.322 5.322 14 C -0.358 4.358 15 H 0.094 0.906 16 C -0.201 4.201 17 N -0.567 5.567 18 Si 0.742 3.258 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.212 1.212 22 C -0.005 4.005 23 O -0.199 6.199 24 C 0.105 3.895 25 C -0.169 4.169 26 C -0.102 4.102 27 C -0.184 4.184 28 C -0.097 4.097 29 C -0.179 4.179 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.241 0.759 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.041 0.959 46 H 0.062 0.938 47 H 0.147 0.853 48 H 0.142 0.858 49 H 0.135 0.865 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.936 -16.525 -4.977 17.366 hybrid contribution -0.861 0.948 0.729 1.474 sum -2.798 -15.577 -4.247 16.386 Atomic orbital electron populations 1.21801 0.95579 1.01823 1.01901 1.21257 0.95178 0.94654 1.03415 1.21757 0.91774 1.00205 1.04668 1.20775 0.90355 0.83608 0.75047 1.90605 1.70384 1.31401 1.49877 1.46531 1.06859 1.09193 1.74941 1.19356 0.79805 0.99116 0.92444 0.88309 1.22088 1.03468 0.94076 0.99010 1.22277 0.91750 0.93799 0.86080 1.22911 1.01444 0.93578 0.99021 1.21206 0.89947 0.91114 0.92220 1.44396 1.36322 1.05442 1.46082 1.18957 1.09714 0.93325 1.13850 0.90642 1.24777 0.98626 0.96723 0.99944 1.69938 1.31584 1.10569 1.44616 0.86209 0.79522 0.78836 0.81245 1.21144 1.21518 1.21160 1.21953 0.92622 0.88973 0.96987 1.86214 1.49638 1.36758 1.47299 1.18767 0.94474 0.85158 0.91086 1.20630 1.05034 0.99349 0.91922 1.20963 0.97132 0.92825 0.99262 1.20942 1.01992 0.99732 0.95725 1.21483 0.97288 0.96676 0.94225 1.19989 1.05393 0.95595 0.96905 0.92689 0.92520 0.92599 0.91335 0.91284 0.88720 0.88868 0.75897 0.89390 0.88970 0.90740 0.90477 0.93077 0.93561 0.93628 0.95918 0.93753 0.85253 0.85819 0.86478 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.11 -0.98 5.22 -26.73 -0.14 -1.12 16 3 C -0.14 -1.34 5.70 -27.88 -0.16 -1.50 16 4 C 0.51 6.35 7.25 -10.98 -0.08 6.27 16 5 O -0.54 -8.11 13.02 5.56 0.07 -8.04 16 6 N -0.72 -8.98 4.75 -55.54 -0.26 -9.24 16 7 C 0.20 2.70 2.46 -69.70 -0.17 2.53 16 8 H 0.10 1.36 7.50 -51.93 -0.39 0.97 16 9 C -0.15 -1.97 4.52 -27.70 -0.13 -2.10 16 10 C 0.10 1.73 0.81 -89.95 -0.07 1.66 16 11 C -0.13 -2.34 6.13 -25.26 -0.15 -2.50 16 12 C 0.18 4.25 5.38 -2.95 -0.02 4.24 16 13 N -0.60 -14.83 3.40 -170.33 -0.58 -15.41 16 14 C -0.23 -6.32 10.28 -15.06 -0.15 -6.48 16 15 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 16 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 17 N -0.92 -26.61 10.31 55.49 0.57 -26.04 16 18 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.12 2.39 4.77 -2.89 -0.01 2.38 16 23 O -0.29 -5.47 9.89 -20.42 -0.20 -5.68 16 24 C 0.15 2.66 5.62 -39.30 -0.22 2.44 16 25 C -0.15 -2.49 9.95 -39.41 -0.39 -2.88 16 26 C -0.08 -1.18 10.06 -39.62 -0.40 -1.58 16 27 C -0.17 -2.31 10.03 -39.65 -0.40 -2.71 16 28 C -0.08 -1.19 9.14 -39.46 -0.36 -1.55 16 29 C -0.18 -2.78 5.02 -104.59 -0.52 -3.31 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.40 4.80 6.29 -40.82 -0.26 4.55 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.09 1.07 7.96 -51.93 -0.41 0.66 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.08 1.18 8.01 -51.93 -0.42 0.77 16 42 H 0.05 1.38 7.38 -51.93 -0.38 0.99 16 43 H 0.05 1.19 7.50 -51.93 -0.39 0.80 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.02 0.42 6.81 -51.93 -0.35 0.06 16 46 H 0.04 0.93 7.16 -51.93 -0.37 0.55 16 47 H 0.13 2.10 8.06 -52.49 -0.42 1.67 16 48 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 49 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 50 H 0.14 2.13 5.10 -52.48 -0.27 1.87 16 LS Contribution 387.20 15.07 5.83 5.83 Total: -1.00 -31.83 387.20 -10.55 -42.39 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.86 Total: 6.49 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -3.11 Total: -7.18 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.27 Total: -50.69 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.13 Total: -13.72 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.83 -10.55 -42.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111530348.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.066 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds