Wall clock time and date at job start Sat Apr 11 2020 07:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46706 * 2 1 4 4 C 1.50710 * 109.46663 * 180.02562 * 3 2 1 5 5 O 1.21276 * 120.00166 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99667 * 180.02562 * 4 3 2 7 7 C 1.46497 * 119.99623 * 180.02562 * 6 4 3 8 8 H 1.08995 * 108.88621 * 33.62841 * 7 6 4 9 9 C 1.52249 * 108.90207 * 152.16596 * 7 6 4 10 10 C 1.51842 * 110.79419 * 88.12228 * 9 7 6 11 11 C 1.54330 * 110.73305 * 180.91696 * 10 9 7 12 12 C 1.54470 * 102.87659 * 152.94406 * 11 10 9 13 13 N 1.47091 * 107.29511 * 338.56711 * 12 11 10 14 14 C 1.36937 * 125.63236 * 178.99002 * 13 12 11 15 15 H 1.07996 * 120.00418 * 179.97438 * 14 13 12 16 16 C 1.38817 * 119.99820 * 359.96362 * 14 13 12 17 17 N 1.31620 * 119.99936 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99865 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47099 * 60.00461 * 18 16 14 20 20 H 1.48505 * 109.46923 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47556 * 299.99997 * 18 16 14 22 22 C 1.47578 * 108.73969 * 358.98146 * 13 12 11 23 23 O 1.42016 * 110.77435 * 57.66096 * 10 9 7 24 24 C 1.36213 * 116.08372 * 305.46095 * 23 10 9 25 25 C 1.38872 * 118.94820 * 205.43784 * 24 23 10 26 26 C 1.38068 * 120.09274 * 179.69869 * 25 24 23 27 27 C 1.38295 * 119.73561 * 0.02562 * 26 25 24 28 28 C 1.37985 * 120.18790 * 0.08254 * 27 26 25 29 29 C 1.38369 * 120.73666 * 25.28564 * 24 23 10 30 30 H 1.09000 * 109.47529 * 59.99745 * 1 2 3 31 31 H 1.09001 * 109.47254 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46701 * 299.99472 * 1 2 3 33 33 H 1.08997 * 109.47090 * 240.00759 * 2 1 3 34 34 H 1.09000 * 109.47529 * 120.00255 * 2 1 3 35 35 H 1.09002 * 109.47109 * 60.00778 * 3 2 1 36 36 H 1.08998 * 109.47851 * 300.00379 * 3 2 1 37 37 H 0.97003 * 119.99977 * 359.97438 * 6 4 3 38 38 H 1.08998 * 109.20972 * 208.46301 * 9 7 6 39 39 H 1.09004 * 109.21273 * 327.83075 * 9 7 6 40 40 H 1.09001 * 110.73493 * 271.29481 * 11 10 9 41 41 H 1.09001 * 110.73048 * 34.42197 * 11 10 9 42 42 H 1.09007 * 109.87571 * 97.98648 * 12 11 10 43 43 H 1.08991 * 109.88233 * 218.98251 * 12 11 10 44 44 H 0.96998 * 120.00138 * 179.97438 * 17 16 14 45 45 H 1.09005 * 110.37792 * 264.47281 * 22 13 12 46 46 H 1.09000 * 110.37532 * 142.12513 * 22 13 12 47 47 H 1.07997 * 119.95505 * 359.71816 * 25 24 23 48 48 H 1.07998 * 120.12970 * 180.28549 * 26 25 24 49 49 H 1.08000 * 119.90153 * 180.10498 * 27 26 25 50 50 H 1.08003 * 119.76394 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1534 0.3923 -0.0015 6 7 4.2208 2.6098 -0.0002 7 6 5.6858 2.6098 -0.0014 8 1 6.0381 1.7516 -0.5735 9 6 6.1785 3.8841 -0.6733 10 6 6.3099 5.0100 0.3370 11 6 6.7875 6.3071 -0.3496 12 6 6.2100 7.4120 0.5624 13 7 5.0911 6.8201 1.3116 14 6 4.3244 7.4669 2.2438 15 1 3.5218 6.9425 2.7409 16 6 4.5790 8.7967 2.5501 17 7 5.5570 9.4360 1.9441 18 14 3.5337 9.6788 3.8223 19 1 3.6499 8.9814 5.1281 20 1 4.0052 11.0798 3.9651 21 1 2.1147 9.6769 3.3845 22 6 4.9310 5.4142 0.8926 23 8 7.1920 4.6434 1.3879 24 6 6.8976 3.4842 2.0399 25 6 7.3332 3.3197 3.3482 26 6 7.0427 2.1568 4.0335 27 6 6.3171 1.1571 3.4115 28 6 5.8861 1.3194 2.1108 29 6 6.1737 2.4849 1.4139 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6765 1.9565 -0.8899 37 1 3.7358 3.4499 0.0001 38 1 7.1504 3.6962 -1.1296 39 1 5.4698 4.1786 -1.4474 40 1 7.8763 6.3542 -0.3707 41 1 6.3798 6.3827 -1.3576 42 1 6.9769 7.7595 1.2547 43 1 5.8538 8.2446 -0.0441 44 1 5.7347 10.3653 2.1578 45 1 4.1705 5.3339 0.1158 46 1 4.6687 4.7909 1.7475 47 1 7.8997 4.1025 3.8305 48 1 7.3772 2.0301 5.0525 49 1 6.0870 0.2471 3.9456 50 1 5.3203 0.5341 1.6316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111530348.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:01 Heat of formation + Delta-G solvation = -44.996903 kcal Electronic energy + Delta-G solvation = -31845.691379 eV Core-core repulsion = 27837.630777 eV Total energy + Delta-G solvation = -4008.060603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.44622 -40.56278 -39.33763 -37.36498 -36.76185 -35.21373 -34.40962 -32.81794 -31.79818 -31.15163 -30.27593 -28.94392 -28.09658 -26.33380 -24.74451 -23.50954 -23.47366 -22.37479 -22.07775 -21.16688 -20.25544 -18.99892 -18.74032 -18.03163 -17.68509 -16.82448 -16.78517 -16.76224 -16.38772 -16.10779 -15.63166 -15.43043 -15.20886 -15.11236 -14.92466 -14.70123 -14.11061 -13.98201 -13.95740 -13.76886 -13.68616 -13.34194 -13.08476 -12.90694 -12.84112 -12.71206 -12.64202 -12.56638 -12.39679 -12.11529 -12.03339 -12.01948 -11.96268 -11.82801 -11.58881 -11.47748 -11.16409 -10.85210 -10.69478 -10.13558 -9.79639 -9.18125 -8.89118 -7.85329 -5.20499 0.28358 0.45248 1.44475 1.47494 1.53646 1.64785 2.21939 2.35545 2.48298 2.88370 3.32390 3.39567 3.41906 3.66313 3.74480 3.85818 3.89529 3.95134 4.05363 4.10051 4.15317 4.19760 4.34512 4.42790 4.51550 4.53867 4.57943 4.62635 4.70042 4.71985 4.75042 4.80063 4.81613 4.93906 4.95119 4.97370 5.08008 5.08635 5.24644 5.30871 5.36874 5.39806 5.42811 5.49420 5.52788 5.58651 5.63728 5.75798 5.90062 6.18225 6.52097 6.56719 7.09119 7.24197 7.75560 8.39104 9.24724 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009559 B = 0.003934 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.577325 B = 7115.427652 C = 8095.079777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.140 4.140 4 C 0.513 3.487 5 O -0.571 6.571 6 N -0.719 5.719 7 C 0.199 3.801 8 H 0.102 0.898 9 C -0.138 4.138 10 C 0.105 3.895 11 C -0.118 4.118 12 C 0.188 3.812 13 N -0.619 5.619 14 C -0.242 4.242 15 H 0.078 0.922 16 C -0.061 4.061 17 N -0.948 5.948 18 Si 0.974 3.026 19 H -0.282 1.282 20 H -0.294 1.294 21 H -0.273 1.273 22 C 0.123 3.877 23 O -0.313 6.313 24 C 0.124 3.876 25 C -0.173 4.173 26 C -0.080 4.080 27 C -0.161 4.161 28 C -0.087 4.087 29 C -0.177 4.177 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.408 0.592 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.111 0.889 42 H 0.004 0.996 43 H 0.017 0.983 44 H 0.247 0.753 45 H 0.051 0.949 46 H 0.030 0.970 47 H 0.120 0.880 48 H 0.153 0.847 49 H 0.145 0.855 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.983 -18.042 -5.754 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.180 4.180 4 C 0.302 3.698 5 O -0.452 6.452 6 N -0.371 5.371 7 C 0.095 3.905 8 H 0.120 0.880 9 C -0.176 4.176 10 C 0.066 3.934 11 C -0.156 4.156 12 C 0.063 3.937 13 N -0.345 5.345 14 C -0.371 4.371 15 H 0.096 0.904 16 C -0.255 4.255 17 N -0.597 5.597 18 Si 0.803 3.197 19 H -0.208 1.208 20 H -0.220 1.220 21 H -0.199 1.199 22 C -0.002 4.002 23 O -0.228 6.228 24 C 0.078 3.922 25 C -0.192 4.192 26 C -0.098 4.098 27 C -0.179 4.179 28 C -0.105 4.105 29 C -0.179 4.179 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.134 0.866 37 H 0.245 0.755 38 H 0.124 0.876 39 H 0.136 0.864 40 H 0.102 0.898 41 H 0.130 0.870 42 H 0.022 0.978 43 H 0.035 0.965 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.049 0.951 47 H 0.138 0.862 48 H 0.170 0.830 49 H 0.163 0.837 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.429 -18.424 -5.664 19.578 hybrid contribution -0.393 1.436 1.011 1.800 sum -3.822 -16.988 -4.653 18.024 Atomic orbital electron populations 1.21772 0.94083 1.02369 1.02490 1.21222 0.96402 0.94345 1.02312 1.21813 0.89415 1.00628 1.06107 1.21301 0.91504 0.82980 0.74058 1.90593 1.71180 1.32298 1.51092 1.46495 1.06329 1.09502 1.74809 1.19305 0.80579 0.99352 0.91311 0.87995 1.22049 1.05299 0.92117 0.98097 1.22258 0.89738 0.94899 0.86483 1.22812 1.01932 0.91596 0.99269 1.20914 0.88597 0.92566 0.91656 1.44667 1.36219 1.07680 1.45927 1.19328 1.09841 0.93737 1.14162 0.90374 1.25585 1.00073 0.97654 1.02149 1.70166 1.33191 1.10272 1.46081 0.85219 0.78458 0.77177 0.78893 1.20841 1.22003 1.19855 1.22125 0.95011 0.85944 0.97144 1.86176 1.50419 1.37866 1.48301 1.19007 0.96135 0.85302 0.91708 1.20840 1.05765 1.00347 0.92234 1.21266 0.96388 0.91750 1.00359 1.21301 1.00715 1.00487 0.95406 1.21610 0.97542 0.96486 0.94854 1.20178 1.04698 0.95155 0.97915 0.91748 0.92083 0.92314 0.92138 0.92753 0.87876 0.86632 0.75486 0.87623 0.86442 0.89774 0.87040 0.97810 0.96482 0.94415 0.93119 0.95133 0.86187 0.82952 0.83742 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.15 16 2 C -0.10 -1.73 5.22 30.59 0.16 -1.57 16 3 C -0.14 -2.26 5.70 29.85 0.17 -2.09 16 4 C 0.51 11.59 7.25 87.66 0.64 12.23 16 5 O -0.57 -16.18 13.02 -3.02 -0.04 -16.22 16 6 N -0.72 -16.19 4.75 -448.01 -2.13 -18.32 16 7 C 0.20 5.04 2.46 43.85 0.11 5.15 16 8 H 0.10 2.58 7.50 -2.39 -0.02 2.56 16 9 C -0.14 -3.28 4.52 29.97 0.14 -3.14 16 10 C 0.11 3.50 0.81 -10.36 -0.01 3.49 16 11 C -0.12 -4.10 6.13 31.55 0.19 -3.91 16 12 C 0.19 9.16 5.38 86.77 0.47 9.63 16 13 N -0.62 -31.25 3.40 -692.79 -2.36 -33.60 16 14 C -0.24 -13.49 10.28 84.03 0.86 -12.63 16 15 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 16 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 17 N -0.95 -57.01 10.31 21.65 0.22 -56.79 16 18 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 22 C 0.12 4.75 4.77 86.53 0.41 5.16 16 23 O -0.31 -12.07 9.89 -95.97 -0.95 -13.02 16 24 C 0.12 4.34 5.62 22.45 0.13 4.46 16 25 C -0.17 -5.75 9.95 22.38 0.22 -5.53 16 26 C -0.08 -2.13 10.06 22.24 0.22 -1.91 16 27 C -0.16 -4.17 10.03 22.22 0.22 -3.95 16 28 C -0.09 -2.50 9.14 22.35 0.20 -2.29 16 29 C -0.18 -5.39 5.02 -19.84 -0.10 -5.48 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 34 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 35 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.41 8.59 6.29 -92.71 -0.58 8.01 16 38 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.12 2.23 7.96 -2.39 -0.02 2.21 16 40 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.11 3.11 8.01 -2.39 -0.02 3.09 16 42 H 0.00 0.21 7.38 -2.38 -0.02 0.19 16 43 H 0.02 0.91 7.50 -2.39 -0.02 0.89 16 44 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 45 H 0.05 1.70 6.81 -2.38 -0.02 1.69 16 46 H 0.03 1.26 7.16 -2.39 -0.02 1.24 16 47 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 48 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 49 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 50 H 0.14 4.05 5.10 -2.91 -0.01 4.04 16 Total: -1.00 -72.24 387.20 2.35 -69.89 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.36 Total: 26.84 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 5.22 Total: -6.55 kcal Atomic # 7 Polarization: -104.45 SS G_CDS: -4.26 Total: -108.71 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.99 Total: -29.23 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -72.24 2.35 -69.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111530348.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.895 kcal (2) G-P(sol) polarization free energy of solvation -72.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds