Wall clock time and date at job start Sat Apr 11 2020 07:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47119 * 2 1 4 4 C 1.52998 * 109.46712 * 119.99677 * 2 1 3 5 5 C 1.53000 * 109.47331 * 65.00337 * 4 2 1 6 6 O 1.42894 * 109.47308 * 179.97438 * 5 4 2 7 7 C 1.42904 * 113.99998 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47026 * 179.97438 * 7 6 5 9 9 N 1.46903 * 109.47608 * 62.14051 * 8 7 6 10 10 C 1.46896 * 111.00078 * 176.41644 * 9 8 7 11 11 C 1.53239 * 109.33580 * 172.74725 * 10 9 8 12 12 N 1.47071 * 108.52502 * 53.83078 * 11 10 9 13 13 C 1.34776 * 120.88751 * 128.83397 * 12 11 10 14 14 O 1.21288 * 119.99650 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00843 * 179.97438 * 13 12 11 16 16 S 1.81001 * 109.47538 * 180.02562 * 15 13 12 17 17 C 1.76205 * 100.00044 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99738 * 359.97438 * 17 16 15 19 19 C 1.38797 * 119.99932 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99938 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99947 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46972 * 89.99791 * 21 19 17 23 23 H 1.48497 * 109.47162 * 210.00138 * 21 19 17 24 24 H 1.48499 * 109.46760 * 330.00154 * 21 19 17 25 25 C 1.47078 * 118.23737 * 308.81413 * 12 11 10 26 26 C 1.46906 * 110.99770 * 52.11413 * 9 8 7 27 27 H 1.08997 * 109.47432 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47308 * 300.00717 * 1 2 3 29 29 H 1.09008 * 109.46894 * 60.00197 * 1 2 3 30 30 H 1.08993 * 109.47057 * 239.99779 * 2 1 3 31 31 H 1.08997 * 109.47319 * 179.97438 * 3 2 1 32 32 H 1.09008 * 109.47076 * 299.99691 * 3 2 1 33 33 H 1.09003 * 109.47291 * 59.99909 * 3 2 1 34 34 H 1.08999 * 109.47341 * 304.99828 * 4 2 1 35 35 H 1.09003 * 109.46936 * 184.99926 * 4 2 1 36 36 H 1.09000 * 109.46987 * 59.99052 * 5 4 2 37 37 H 1.09003 * 109.46775 * 299.99688 * 5 4 2 38 38 H 1.08993 * 109.47650 * 59.99346 * 7 6 5 39 39 H 1.09008 * 109.46472 * 299.99368 * 7 6 5 40 40 H 1.08998 * 109.47361 * 302.13843 * 8 7 6 41 41 H 1.09002 * 109.47509 * 182.13943 * 8 7 6 42 42 H 1.08999 * 109.49472 * 52.79002 * 10 9 8 43 43 H 1.09000 * 109.49523 * 292.70641 * 10 9 8 44 44 H 1.09004 * 109.62544 * 173.53988 * 11 10 9 45 45 H 1.09003 * 109.63070 * 293.91923 * 11 10 9 46 46 H 1.09002 * 109.47062 * 300.00935 * 15 13 12 47 47 H 1.09004 * 109.46609 * 59.99900 * 15 13 12 48 48 H 0.96998 * 119.99491 * 179.97438 * 20 19 17 49 49 H 1.09003 * 109.63276 * 170.89679 * 25 12 11 50 50 H 1.09001 * 109.62932 * 291.47496 * 25 12 11 51 51 H 1.08998 * 109.49000 * 67.29597 * 26 9 8 52 52 H 1.08999 * 109.51130 * 307.22938 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1881 6 8 2.1119 -2.8691 2.3546 7 6 1.7861 -4.2599 2.3966 8 6 2.3436 -4.8757 3.6814 9 7 1.7159 -4.2343 4.8444 10 6 2.1645 -4.8590 6.0960 11 6 1.6334 -4.0513 7.2850 12 7 0.1756 -3.9168 7.1448 13 6 -0.6496 -4.2349 8.1618 14 8 -0.1923 -4.6377 9.2105 15 6 -2.1403 -4.0889 7.9967 16 16 -2.9688 -4.5902 9.5259 17 6 -4.6488 -4.3275 9.0639 18 1 -4.8862 -3.9590 8.0769 19 6 -5.6671 -4.5932 9.9690 20 7 -5.3777 -5.0419 11.1721 21 14 -7.4481 -4.3140 9.4795 22 1 -7.9964 -5.5558 8.8775 23 1 -8.2415 -3.9547 10.6823 24 1 -7.5220 -3.2096 8.4896 25 6 -0.3580 -3.4256 5.8652 26 6 0.2513 -4.2580 4.7320 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6053 -0.2616 2.1370 35 1 3.1262 -0.6443 1.2952 36 1 2.0698 -2.6549 0.3003 37 1 0.5488 -2.2723 1.1421 38 1 2.2237 -4.7619 1.5338 39 1 0.7028 -4.3799 2.3760 40 1 3.4220 -4.7221 3.7198 41 1 2.1281 -5.9441 3.6955 42 1 3.2540 -4.8747 6.1246 43 1 1.7840 -5.8790 6.1502 44 1 1.8654 -4.5719 8.2141 45 1 2.0960 -3.0643 7.2932 46 1 -2.3815 -3.0488 7.7772 47 1 -2.4785 -4.7212 7.1756 48 1 -6.0894 -5.2272 11.8047 49 1 -1.4428 -3.5326 5.8556 50 1 -0.0895 -2.3773 5.7348 51 1 -0.1024 -5.2863 4.8052 52 1 -0.0469 -3.8382 3.7714 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112629926.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:05 Heat of formation + Delta-G solvation = -85.130945 kcal Electronic energy + Delta-G solvation = -28025.508214 eV Core-core repulsion = 24151.151220 eV Total energy + Delta-G solvation = -3874.356994 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.03299 -38.79654 -37.74311 -36.45899 -34.55889 -32.42325 -31.78935 -30.62033 -29.45601 -28.67487 -27.57272 -26.13787 -25.43335 -23.93889 -23.41752 -22.31454 -21.03688 -20.30434 -18.95254 -17.72315 -17.06505 -16.90967 -16.46061 -15.84464 -15.55812 -15.40446 -15.16498 -15.05031 -14.84270 -14.79805 -14.32318 -14.08560 -13.92295 -13.66113 -13.51209 -13.14245 -12.94103 -12.64909 -12.57796 -12.37471 -12.24548 -12.04032 -11.86505 -11.77153 -11.66743 -11.40318 -11.27766 -11.16115 -11.06039 -11.03317 -11.01602 -10.96195 -10.83280 -10.73873 -9.81047 -9.79642 -9.32194 -9.06176 -8.72446 -8.30665 -8.21251 -6.49123 -6.20915 -3.91373 2.94552 3.08373 3.22376 3.25562 3.29535 3.31267 3.58095 3.69054 4.20835 4.43625 4.45481 4.53073 4.65294 4.67678 4.74887 4.83530 4.89981 4.96903 5.04563 5.07206 5.09356 5.12226 5.14136 5.18273 5.25289 5.26058 5.29169 5.35122 5.42020 5.42692 5.49750 5.53857 5.57671 5.60367 5.63571 5.65827 5.78372 5.79624 5.84418 5.89825 5.93026 5.99482 6.01308 6.12876 6.63217 6.74464 6.83155 6.99228 7.59714 7.62711 8.35769 8.59517 9.24235 10.86493 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010824 B = 0.002162 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.174454 B =12946.150789 C =14756.630111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.112 4.112 5 C 0.059 3.941 6 O -0.369 6.369 7 C 0.061 3.939 8 C 0.058 3.942 9 N -0.527 5.527 10 C 0.042 3.958 11 C 0.119 3.881 12 N -0.622 5.622 13 C 0.535 3.465 14 O -0.519 6.519 15 C -0.150 4.150 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.115 3.885 26 C 0.036 3.964 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.085 0.915 43 H 0.038 0.962 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.268 0.732 49 H 0.091 0.909 50 H 0.075 0.925 51 H 0.038 0.962 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.793 6.201 -25.204 30.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.150 4.150 5 C -0.018 4.018 6 O -0.288 6.288 7 C -0.016 4.016 8 C -0.070 4.070 9 N -0.252 5.252 10 C -0.086 4.086 11 C -0.004 4.004 12 N -0.358 5.358 13 C 0.323 3.677 14 O -0.393 6.393 15 C -0.300 4.300 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.008 4.008 26 C -0.092 4.092 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.103 0.897 43 H 0.056 0.944 44 H 0.113 0.887 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.078 0.922 49 H 0.109 0.891 50 H 0.093 0.907 51 H 0.056 0.944 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.649 6.126 -23.294 29.860 hybrid contribution -2.094 -0.384 -1.930 2.873 sum 15.555 5.742 -25.224 30.185 Atomic orbital electron populations 1.21935 0.95066 1.01896 1.02056 1.21054 0.96058 0.96401 0.97797 1.21827 1.01004 0.95646 1.01971 1.21553 1.01771 0.93166 0.98501 1.22566 0.98067 0.93269 0.87878 1.88014 1.78258 1.20743 1.41800 1.22605 0.99151 0.82864 0.96980 1.22134 1.00384 0.95418 0.89077 1.61929 1.06723 1.55074 1.01450 1.22504 1.00491 0.96149 0.89466 1.21573 0.80035 1.00634 0.98150 1.48157 1.06365 1.67312 1.13993 1.20329 0.88392 0.76158 0.82829 1.90687 1.77335 1.44595 1.26703 1.23543 0.93921 1.04986 1.07588 1.85407 1.01329 1.85770 1.10937 1.22857 0.91352 1.51447 1.02616 0.90969 1.24995 0.99519 0.94619 0.94495 1.70019 1.33305 1.41857 1.05071 0.86169 0.82566 0.78624 0.78149 1.20303 1.20745 1.19687 1.21774 0.98904 0.98281 0.81882 1.22594 0.87831 0.99210 0.99577 0.92563 0.92304 0.92706 0.91299 0.92625 0.92623 0.92423 0.90836 0.91229 0.93946 0.93326 0.93112 0.92990 0.89669 0.93428 0.89652 0.94354 0.88663 0.91047 0.89245 0.89431 0.92198 0.89085 0.90652 0.94403 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.95 37.16 0.33 -0.54 16 2 C -0.09 -0.54 2.92 -90.62 -0.26 -0.80 16 3 C -0.15 -0.79 9.19 37.16 0.34 -0.45 16 4 C -0.11 -0.78 5.05 -26.73 -0.14 -0.91 16 5 C 0.06 0.43 5.69 37.16 0.21 0.64 16 6 O -0.37 -3.48 10.25 -35.23 -0.36 -3.84 16 7 C 0.06 0.46 5.57 37.16 0.21 0.67 16 8 C 0.06 0.47 5.51 -3.82 -0.02 0.45 16 9 N -0.53 -5.40 4.64 -234.32 -1.09 -6.49 16 10 C 0.04 0.45 5.62 -3.70 -0.02 0.43 16 11 C 0.12 1.56 6.60 -3.61 -0.02 1.53 16 12 N -0.62 -9.41 3.01 -172.47 -0.52 -9.93 16 13 C 0.53 10.53 7.73 -10.99 -0.08 10.45 16 14 O -0.52 -12.16 15.32 5.55 0.09 -12.07 16 15 C -0.15 -3.11 4.52 36.00 0.16 -2.95 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.29 9.50 30.94 0.29 -14.99 16 18 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 21 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.12 1.39 6.50 -3.60 -0.02 1.37 16 26 C 0.04 0.38 5.23 -3.70 -0.02 0.36 16 27 H 0.06 0.31 6.57 -51.93 -0.34 -0.03 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.05 0.33 6.57 -51.93 -0.34 -0.01 16 38 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.05 0.38 6.03 -51.92 -0.31 0.07 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 43 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.10 1.37 7.06 -51.93 -0.37 1.01 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.09 1.73 8.00 -51.91 -0.42 1.31 16 47 H 0.09 1.68 7.66 -51.91 -0.40 1.28 16 48 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 49 H 0.09 1.08 6.02 -51.93 -0.31 0.77 16 50 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.09 0.80 5.72 -51.93 -0.30 0.50 16 LS Contribution 420.08 15.07 6.33 6.33 Total: -1.00 -34.40 420.08 -10.71 -45.11 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -9.51 Total: -3.35 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 0.86 Total: -2.74 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: -0.87 Total: -41.96 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.28 Total: -15.91 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.40 -10.71 -45.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112629926.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.024 kcal (2) G-P(sol) polarization free energy of solvation -34.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds