Wall clock time and date at job start Sat Apr 11 2020 07:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47119 * 2 1 4 4 C 1.52998 * 109.46712 * 119.99677 * 2 1 3 5 5 C 1.53000 * 109.47331 * 65.00337 * 4 2 1 6 6 O 1.42894 * 109.47308 * 179.97438 * 5 4 2 7 7 C 1.42904 * 113.99998 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47026 * 179.97438 * 7 6 5 9 9 N 1.46903 * 109.47608 * 62.14051 * 8 7 6 10 10 C 1.46896 * 111.00078 * 176.41644 * 9 8 7 11 11 C 1.53239 * 109.33580 * 172.74725 * 10 9 8 12 12 N 1.47071 * 108.52502 * 53.83078 * 11 10 9 13 13 C 1.34776 * 120.88751 * 128.83397 * 12 11 10 14 14 O 1.21288 * 119.99650 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00843 * 179.97438 * 13 12 11 16 16 S 1.81001 * 109.47538 * 180.02562 * 15 13 12 17 17 C 1.76205 * 100.00044 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99738 * 359.97438 * 17 16 15 19 19 C 1.38797 * 119.99932 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99938 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99947 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46972 * 89.99791 * 21 19 17 23 23 H 1.48497 * 109.47162 * 210.00138 * 21 19 17 24 24 H 1.48499 * 109.46760 * 330.00154 * 21 19 17 25 25 C 1.47078 * 118.23737 * 308.81413 * 12 11 10 26 26 C 1.46906 * 110.99770 * 52.11413 * 9 8 7 27 27 H 1.08997 * 109.47432 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47308 * 300.00717 * 1 2 3 29 29 H 1.09008 * 109.46894 * 60.00197 * 1 2 3 30 30 H 1.08993 * 109.47057 * 239.99779 * 2 1 3 31 31 H 1.08997 * 109.47319 * 179.97438 * 3 2 1 32 32 H 1.09008 * 109.47076 * 299.99691 * 3 2 1 33 33 H 1.09003 * 109.47291 * 59.99909 * 3 2 1 34 34 H 1.08999 * 109.47341 * 304.99828 * 4 2 1 35 35 H 1.09003 * 109.46936 * 184.99926 * 4 2 1 36 36 H 1.09000 * 109.46987 * 59.99052 * 5 4 2 37 37 H 1.09003 * 109.46775 * 299.99688 * 5 4 2 38 38 H 1.08993 * 109.47650 * 59.99346 * 7 6 5 39 39 H 1.09008 * 109.46472 * 299.99368 * 7 6 5 40 40 H 1.08998 * 109.47361 * 302.13843 * 8 7 6 41 41 H 1.09002 * 109.47509 * 182.13943 * 8 7 6 42 42 H 1.08999 * 109.49472 * 52.79002 * 10 9 8 43 43 H 1.09000 * 109.49523 * 292.70641 * 10 9 8 44 44 H 1.09004 * 109.62544 * 173.53988 * 11 10 9 45 45 H 1.09003 * 109.63070 * 293.91923 * 11 10 9 46 46 H 1.09002 * 109.47062 * 300.00935 * 15 13 12 47 47 H 1.09004 * 109.46609 * 59.99900 * 15 13 12 48 48 H 0.96998 * 119.99491 * 179.97438 * 20 19 17 49 49 H 1.09003 * 109.63276 * 170.89679 * 25 12 11 50 50 H 1.09001 * 109.62932 * 291.47496 * 25 12 11 51 51 H 1.08998 * 109.49000 * 67.29597 * 26 9 8 52 52 H 1.08999 * 109.51130 * 307.22938 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1881 6 8 2.1119 -2.8691 2.3546 7 6 1.7861 -4.2599 2.3966 8 6 2.3436 -4.8757 3.6814 9 7 1.7159 -4.2343 4.8444 10 6 2.1645 -4.8590 6.0960 11 6 1.6334 -4.0513 7.2850 12 7 0.1756 -3.9168 7.1448 13 6 -0.6496 -4.2349 8.1618 14 8 -0.1923 -4.6377 9.2105 15 6 -2.1403 -4.0889 7.9967 16 16 -2.9688 -4.5902 9.5259 17 6 -4.6488 -4.3275 9.0639 18 1 -4.8862 -3.9590 8.0769 19 6 -5.6671 -4.5932 9.9690 20 7 -5.3777 -5.0419 11.1721 21 14 -7.4481 -4.3140 9.4795 22 1 -7.9964 -5.5558 8.8775 23 1 -8.2415 -3.9547 10.6823 24 1 -7.5220 -3.2096 8.4896 25 6 -0.3580 -3.4256 5.8652 26 6 0.2513 -4.2580 4.7320 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6053 -0.2616 2.1370 35 1 3.1262 -0.6443 1.2952 36 1 2.0698 -2.6549 0.3003 37 1 0.5488 -2.2723 1.1421 38 1 2.2237 -4.7619 1.5338 39 1 0.7028 -4.3799 2.3760 40 1 3.4220 -4.7221 3.7198 41 1 2.1281 -5.9441 3.6955 42 1 3.2540 -4.8747 6.1246 43 1 1.7840 -5.8790 6.1502 44 1 1.8654 -4.5719 8.2141 45 1 2.0960 -3.0643 7.2932 46 1 -2.3815 -3.0488 7.7772 47 1 -2.4785 -4.7212 7.1756 48 1 -6.0894 -5.2272 11.8047 49 1 -1.4428 -3.5326 5.8556 50 1 -0.0895 -2.3773 5.7348 51 1 -0.1024 -5.2863 4.8052 52 1 -0.0469 -3.8382 3.7714 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112629926.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:04 Heat of formation + Delta-G solvation = -107.476224 kcal Electronic energy + Delta-G solvation = -28026.477178 eV Core-core repulsion = 24151.151220 eV Total energy + Delta-G solvation = -3875.325958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.23644 -39.65461 -38.65712 -37.06579 -35.66485 -34.58941 -32.82745 -31.38779 -30.69776 -29.53316 -28.00893 -27.72207 -27.00117 -24.88648 -23.93567 -23.22086 -21.99506 -20.78810 -20.34220 -19.50184 -18.32159 -17.53011 -17.34589 -17.01419 -16.87808 -16.69071 -16.36273 -16.10151 -15.88102 -15.76586 -15.49436 -14.94044 -14.78140 -14.67286 -14.50631 -14.45895 -14.17990 -13.66929 -13.39783 -13.30161 -13.17420 -13.03374 -12.92324 -12.89420 -12.66692 -12.61584 -12.43530 -12.39911 -12.30386 -12.10696 -11.72999 -11.65482 -11.60263 -11.46987 -11.43696 -11.14653 -10.90656 -10.38563 -10.27685 -9.84979 -9.24440 -8.68382 -8.34859 -6.13588 1.24093 1.42514 1.44951 1.53814 1.56132 2.05720 2.26848 2.71581 2.89129 2.99178 3.23460 3.62618 3.83458 3.89908 3.96718 3.99794 4.05076 4.12434 4.19123 4.21990 4.24248 4.32377 4.35803 4.36906 4.43108 4.45400 4.55739 4.56820 4.59017 4.67502 4.74485 4.81288 4.82364 4.83729 4.85159 4.94615 4.98910 5.03904 5.04913 5.13598 5.16515 5.34609 5.41295 5.46803 5.47031 5.53021 5.97328 6.00763 6.19437 6.28346 6.42467 7.06086 7.10064 8.74397 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010824 B = 0.002162 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.174454 B =12946.150789 C =14756.630111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.109 4.109 5 C 0.058 3.942 6 O -0.392 6.392 7 C 0.060 3.940 8 C 0.058 3.942 9 N -0.534 5.534 10 C 0.052 3.948 11 C 0.116 3.884 12 N -0.609 5.609 13 C 0.533 3.467 14 O -0.567 6.567 15 C -0.123 4.123 16 S -0.151 6.151 17 C -0.545 4.545 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.257 1.257 25 C 0.109 3.891 26 C 0.043 3.957 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.107 0.893 43 H 0.029 0.971 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.271 0.729 49 H 0.095 0.905 50 H 0.086 0.914 51 H 0.032 0.968 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.547 6.805 -28.460 33.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.146 4.146 5 C -0.018 4.018 6 O -0.311 6.311 7 C -0.016 4.016 8 C -0.069 4.069 9 N -0.259 5.259 10 C -0.077 4.077 11 C -0.007 4.007 12 N -0.344 5.344 13 C 0.321 3.679 14 O -0.446 6.446 15 C -0.274 4.274 16 S 0.076 5.924 17 C -0.693 4.693 18 H 0.101 0.899 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.181 1.181 25 C -0.013 4.013 26 C -0.086 4.086 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.125 0.875 43 H 0.048 0.952 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.125 0.875 47 H 0.125 0.875 48 H 0.080 0.920 49 H 0.113 0.887 50 H 0.104 0.896 51 H 0.051 0.949 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 17.435 6.746 -26.615 32.524 hybrid contribution -1.871 -0.528 -1.015 2.193 sum 15.563 6.217 -27.630 32.316 Atomic orbital electron populations 1.21933 0.95017 1.02005 1.01974 1.21035 0.96046 0.96438 0.97455 1.21834 1.01131 0.95528 1.02010 1.21519 1.01338 0.93286 0.98502 1.22639 0.98355 0.93140 0.87694 1.87983 1.78681 1.21649 1.42791 1.22672 0.99482 0.82304 0.97189 1.22198 1.00468 0.95872 0.88410 1.61938 1.06622 1.55493 1.01883 1.22407 1.01600 0.94950 0.88716 1.21731 0.78649 1.01522 0.98775 1.48177 1.06959 1.65410 1.13847 1.20151 0.88277 0.76295 0.83194 1.90670 1.77847 1.47231 1.28802 1.23352 0.94181 1.05997 1.03839 1.85600 1.03227 1.86746 1.16844 1.23185 0.91374 1.51513 1.03184 0.89864 1.26154 1.04894 0.93943 0.94268 1.70188 1.35027 1.43042 1.06500 0.84936 0.75698 0.79144 0.78095 1.19251 1.20323 1.18103 1.22044 0.99327 0.99181 0.80791 1.22542 0.87992 0.98595 0.99435 0.92353 0.93038 0.92145 0.90546 0.92465 0.91981 0.92999 0.92195 0.91742 0.92880 0.92908 0.91411 0.92591 0.89284 0.92456 0.87471 0.95246 0.90480 0.89958 0.87514 0.87515 0.91994 0.88702 0.89571 0.94933 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.95 71.98 0.64 -0.85 16 2 C -0.09 -0.90 2.92 -10.79 -0.03 -0.93 16 3 C -0.15 -1.41 9.19 71.98 0.66 -0.75 16 4 C -0.11 -1.36 5.05 30.59 0.15 -1.20 16 5 C 0.06 0.72 5.69 71.98 0.41 1.13 16 6 O -0.39 -6.45 10.25 -148.98 -1.53 -7.98 16 7 C 0.06 0.74 5.57 71.98 0.40 1.14 16 8 C 0.06 0.79 5.51 86.30 0.48 1.27 16 9 N -0.53 -9.66 4.64 -895.25 -4.15 -13.81 16 10 C 0.05 1.01 5.62 86.38 0.49 1.50 16 11 C 0.12 2.94 6.60 86.35 0.57 3.51 16 12 N -0.61 -17.92 3.01 -817.95 -2.46 -20.38 16 13 C 0.53 21.12 7.73 87.66 0.68 21.80 16 14 O -0.57 -27.52 15.32 -3.05 -0.05 -27.57 16 15 C -0.12 -5.06 4.52 71.23 0.32 -4.74 16 16 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 17 C -0.54 -31.29 9.50 67.95 0.65 -30.65 16 18 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 19 C 0.01 0.69 5.49 84.86 0.47 1.16 16 20 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 21 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 25 C 0.11 2.41 6.50 86.35 0.56 2.97 16 26 C 0.04 0.78 5.23 86.38 0.45 1.23 16 27 H 0.06 0.54 6.57 -2.39 -0.02 0.53 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.05 0.60 6.57 -2.39 -0.02 0.59 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.06 0.64 6.03 -2.38 -0.01 0.63 16 40 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.11 1.65 8.11 -2.39 -0.02 1.63 16 43 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.08 2.26 7.06 -2.39 -0.02 2.25 16 45 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.11 4.01 8.00 -2.39 -0.02 3.99 16 47 H 0.11 3.97 7.66 -2.39 -0.02 3.95 16 48 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 49 H 0.09 2.03 6.02 -2.39 -0.01 2.01 16 50 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.11 1.60 5.72 -2.39 -0.01 1.59 16 Total: -1.00 -76.25 420.08 0.73 -75.53 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.87 Total: 17.73 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 6.89 Total: -3.41 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -6.33 Total: -90.23 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.57 Total: -35.55 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -76.25 0.73 -75.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112629926.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.951 kcal (2) G-P(sol) polarization free energy of solvation -76.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds