Wall clock time and date at job start Sat Apr 11 2020 07:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00265 * 2 1 4 4 C 1.53003 * 109.47283 * 124.99924 * 3 2 1 5 5 C 1.50702 * 109.47376 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99519 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00226 * 179.97438 * 5 4 3 8 8 C 1.47077 * 120.88351 * 179.97438 * 7 5 4 9 9 C 1.53236 * 108.52406 * 231.21035 * 8 7 5 10 10 N 1.46896 * 109.33854 * 306.17201 * 9 8 7 11 11 C 1.46902 * 111.00365 * 187.25372 * 10 9 8 12 12 C 1.50696 * 109.47653 * 169.99656 * 11 10 9 13 13 C 1.38300 * 119.92953 * 269.72940 * 12 11 10 14 14 C 1.38100 * 120.06481 * 179.72311 * 13 12 11 15 15 C 1.38879 * 119.93523 * 0.54683 * 14 13 12 16 16 O 1.35750 * 120.07634 * 179.74671 * 15 14 13 17 17 C 1.34827 * 117.00361 * 174.44218 * 16 15 14 18 18 H 1.08002 * 119.99776 * 5.05667 * 17 16 15 19 19 C 1.38644 * 119.99995 * 185.05608 * 17 16 15 20 20 N 1.31555 * 120.00132 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00126 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47312 * 89.99843 * 21 19 17 23 23 H 1.48502 * 109.47152 * 209.99887 * 21 19 17 24 24 H 1.48503 * 109.46783 * 329.99418 * 21 19 17 25 25 C 1.38885 * 119.85554 * 359.72716 * 15 14 13 26 26 C 1.38100 * 119.93438 * 359.97438 * 25 15 14 27 27 C 1.46899 * 111.27364 * 63.10475 * 10 9 8 28 28 C 1.47079 * 120.87560 * 0.02562 * 7 5 4 29 29 H 1.07994 * 119.99810 * 0.02562 * 1 2 3 30 30 H 1.07994 * 119.99873 * 179.97438 * 1 2 3 31 31 H 1.08007 * 120.00041 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47211 * 5.00220 * 3 2 1 33 33 H 1.08997 * 109.47153 * 244.99548 * 3 2 1 34 34 H 1.08995 * 109.47078 * 59.99864 * 4 3 2 35 35 H 1.09003 * 109.46482 * 300.00256 * 4 3 2 36 36 H 1.08997 * 109.62468 * 111.49737 * 8 7 5 37 37 H 1.09009 * 109.78645 * 351.01460 * 8 7 5 38 38 H 1.08993 * 109.49631 * 186.21037 * 9 8 7 39 39 H 1.09004 * 109.49241 * 66.12599 * 9 8 7 40 40 H 1.09004 * 109.47197 * 290.00337 * 11 10 9 41 41 H 1.09006 * 109.46647 * 49.99496 * 11 10 9 42 42 H 1.07999 * 119.96721 * 359.97438 * 13 12 11 43 43 H 1.08003 * 120.03649 * 180.27282 * 14 13 12 44 44 H 0.97000 * 120.00128 * 180.02562 * 20 19 17 45 45 H 1.08005 * 120.02888 * 179.97438 * 25 15 14 46 46 H 1.07999 * 119.96459 * 180.02562 * 26 25 15 47 47 H 1.08995 * 109.49206 * 56.85247 * 27 10 9 48 48 H 1.08996 * 109.49797 * 176.93965 * 27 10 9 49 49 H 1.09006 * 109.62269 * 248.49474 * 28 7 5 50 50 H 1.08996 * 109.63692 * 9.08015 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7882 2.6384 1.1820 6 8 3.5697 3.4647 0.3216 7 7 4.7045 2.8875 2.1385 8 6 5.4511 4.1546 2.1571 9 6 6.9466 3.8370 2.2599 10 7 7.1796 2.9617 3.4164 11 6 8.6172 2.7727 3.6526 12 6 8.8224 2.0811 4.9756 13 6 8.9718 2.8290 6.1293 14 6 9.1542 2.1980 7.3441 15 6 9.1990 0.8113 7.4049 16 8 9.3834 0.1882 8.5968 17 6 9.3019 -1.1576 8.6031 18 1 9.1794 -1.6955 7.6746 19 6 9.3753 -1.8509 9.8015 20 7 9.2953 -3.1640 9.8077 21 14 9.5865 -0.9205 11.4075 22 1 8.2514 -0.5896 11.9671 23 1 10.3330 -1.7650 12.3744 24 1 10.3431 0.3327 11.1577 25 6 9.0544 0.0633 6.2437 26 6 8.8660 0.7000 5.0328 27 6 6.4988 1.6703 3.2532 28 6 4.9851 1.8989 3.1907 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6214 1.4025 -0.9313 34 1 3.7400 0.5065 1.0921 35 1 2.4772 1.2355 2.1130 36 1 5.1428 4.7485 3.0175 37 1 5.2571 4.7107 1.2398 38 1 7.5073 4.7631 2.3859 39 1 7.2749 3.3333 1.3507 40 1 9.0394 2.1624 2.8542 41 1 9.1133 3.7432 3.6690 42 1 8.9416 3.9075 6.0808 43 1 9.2665 2.7824 8.2454 44 1 9.3463 -3.6491 10.6462 45 1 9.0891 -1.0153 6.2877 46 1 8.7530 0.1188 4.1296 47 1 6.8333 1.1969 2.3302 48 1 6.7346 1.0252 4.0995 49 1 4.6321 2.2758 4.1507 50 1 4.4827 0.9607 2.9553 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112687502.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:08 Heat of formation + Delta-G solvation = -26.733412 kcal Electronic energy + Delta-G solvation = -29297.009985 eV Core-core repulsion = 25289.741347 eV Total energy + Delta-G solvation = -4007.268638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.36625 -40.85803 -39.44048 -38.13463 -36.32264 -35.66818 -34.42513 -32.74665 -31.80900 -31.61575 -31.29019 -28.69839 -27.28949 -25.71096 -25.10555 -24.22944 -23.55854 -22.12149 -21.71445 -20.68571 -19.86966 -19.73113 -19.04917 -18.20581 -17.02659 -16.92186 -16.66747 -16.53383 -16.23522 -16.17250 -15.81694 -15.58295 -15.52111 -15.42357 -14.96346 -14.92629 -14.65617 -14.32674 -14.22638 -14.03612 -13.90719 -13.50323 -13.42953 -13.05716 -12.93559 -12.79477 -12.57135 -12.50715 -12.40427 -12.30184 -12.12615 -12.01116 -11.95960 -11.89295 -11.76637 -11.23816 -10.88297 -10.86966 -10.22447 -9.85167 -9.72313 -9.27598 -8.92844 -8.48327 -6.20289 0.60887 0.65727 1.32858 1.36342 1.38356 1.52849 1.57581 1.97930 2.29174 2.69974 2.95624 3.15733 3.28689 3.46709 3.87666 3.90929 3.96652 4.04095 4.05059 4.13759 4.21025 4.25032 4.26096 4.33851 4.37293 4.44436 4.50012 4.54544 4.62316 4.67569 4.75324 4.77485 4.83839 4.87905 4.89748 4.91059 5.03477 5.06401 5.07833 5.19117 5.29635 5.39863 5.45067 5.61480 5.76172 5.78793 5.83266 5.89757 5.93597 6.02046 6.11703 6.28901 6.38157 6.86632 7.10991 7.62280 8.63170 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.002167 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.812448 B =12917.598929 C =14586.231209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C -0.075 4.075 4 C -0.131 4.131 5 C 0.510 3.490 6 O -0.586 6.586 7 N -0.613 5.613 8 C 0.115 3.885 9 C 0.049 3.951 10 N -0.539 5.539 11 C 0.115 3.885 12 C -0.144 4.144 13 C -0.047 4.047 14 C -0.194 4.194 15 C 0.120 3.880 16 O -0.248 6.248 17 C -0.396 4.396 18 H 0.082 0.918 19 C 0.009 3.991 20 N -0.924 5.924 21 Si 0.969 3.031 22 H -0.266 1.266 23 H -0.269 1.269 24 H -0.263 1.263 25 C -0.235 4.235 26 C -0.064 4.064 27 C 0.037 3.963 28 C 0.113 3.887 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.033 0.967 40 H 0.043 0.957 41 H 0.099 0.901 42 H 0.151 0.849 43 H 0.125 0.875 44 H 0.284 0.716 45 H 0.106 0.894 46 H 0.130 0.870 47 H 0.039 0.961 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.505 11.912 -17.923 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.178 4.178 3 C -0.113 4.113 4 C -0.170 4.170 5 C 0.301 3.699 6 O -0.467 6.467 7 N -0.346 5.346 8 C -0.008 4.008 9 C -0.079 4.079 10 N -0.263 5.263 11 C -0.011 4.011 12 C -0.145 4.145 13 C -0.065 4.065 14 C -0.213 4.213 15 C 0.071 3.929 16 O -0.155 6.155 17 C -0.472 4.472 18 H 0.100 0.900 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.791 3.209 22 H -0.191 1.191 23 H -0.194 1.194 24 H -0.188 1.188 25 C -0.255 4.255 26 C -0.083 4.083 27 C -0.092 4.092 28 C -0.010 4.010 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.140 0.860 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.117 0.883 42 H 0.168 0.832 43 H 0.143 0.857 44 H 0.093 0.907 45 H 0.124 0.876 46 H 0.148 0.852 47 H 0.057 0.943 48 H 0.104 0.896 49 H 0.096 0.904 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.763 12.484 -17.634 24.138 hybrid contribution 0.551 -0.908 0.143 1.072 sum -10.212 11.575 -17.491 23.328 Atomic orbital electron populations 1.24043 0.96080 1.02476 1.00520 1.23007 0.96235 0.98179 1.00418 1.20430 0.97540 0.95698 0.97632 1.21694 0.99095 0.94475 1.01785 1.21261 0.79263 0.89566 0.79837 1.90665 1.67162 1.49995 1.38880 1.48334 1.39263 1.18914 1.28093 1.21694 0.90435 0.85670 1.02978 1.22453 0.95933 0.98391 0.91129 1.61936 1.10914 1.13954 1.39537 1.20834 0.87585 1.00519 0.92208 1.19562 1.06634 0.92508 0.95751 1.20886 0.95385 1.00311 0.89961 1.20522 1.10379 0.90339 1.00025 1.19697 0.94783 0.93127 0.85311 1.83519 1.81555 1.21314 1.29133 1.20690 1.51656 0.78371 0.96487 0.90011 1.25254 0.95824 0.95872 1.01951 1.69725 1.50203 1.06997 1.29545 0.85242 0.79244 0.78720 0.77671 1.19101 1.19395 1.18775 1.21227 1.10811 0.99977 0.93436 1.20876 0.96917 0.94546 0.95915 1.22542 0.94027 0.91481 1.01162 1.21981 0.95272 0.92861 0.90847 0.88738 0.87258 0.85964 0.92176 0.91471 0.86773 0.87112 0.90462 0.89671 0.87646 0.94921 0.93841 0.88293 0.83152 0.85717 0.90652 0.87575 0.85211 0.94253 0.89602 0.90397 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 14.32 67.78 0.97 -1.39 16 2 C -0.16 -2.01 9.52 25.65 0.24 -1.77 16 3 C -0.08 -1.16 4.95 29.85 0.15 -1.01 16 4 C -0.13 -1.77 4.05 29.85 0.12 -1.65 16 5 C 0.51 10.29 7.71 87.66 0.68 10.97 16 6 O -0.59 -16.26 15.44 -3.05 -0.05 -16.30 16 7 N -0.61 -11.00 3.01 -817.99 -2.46 -13.46 16 8 C 0.11 1.99 6.59 86.35 0.57 2.56 16 9 C 0.05 0.76 5.62 86.38 0.49 1.24 16 10 N -0.54 -9.84 4.62 -899.90 -4.16 -14.00 16 11 C 0.12 2.18 5.12 85.56 0.44 2.62 16 12 C -0.14 -3.77 4.89 -19.84 -0.10 -3.87 16 13 C -0.05 -1.32 9.69 22.25 0.22 -1.10 16 14 C -0.19 -7.00 9.99 22.39 0.22 -6.77 16 15 C 0.12 5.37 6.65 22.58 0.15 5.52 16 16 O -0.25 -13.15 8.59 -22.71 -0.19 -13.35 16 17 C -0.40 -22.83 9.95 67.92 0.68 -22.15 16 18 H 0.08 4.92 5.44 -2.91 -0.02 4.91 16 19 C 0.01 0.53 5.49 84.83 0.47 0.99 16 20 N -0.92 -54.43 13.96 21.61 0.30 -54.13 16 21 Si 0.97 44.85 28.62 68.60 1.96 46.81 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 24 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 25 C -0.24 -9.70 9.17 22.39 0.21 -9.50 16 26 C -0.06 -1.98 7.85 22.25 0.17 -1.81 16 27 C 0.04 0.66 5.33 86.37 0.46 1.12 16 28 C 0.11 1.74 6.50 86.34 0.56 2.30 16 29 H 0.09 1.15 7.84 -2.91 -0.02 1.13 16 30 H 0.11 1.05 8.06 -2.91 -0.02 1.03 16 31 H 0.12 1.22 8.06 -2.91 -0.02 1.20 16 32 H 0.06 1.07 7.75 -2.39 -0.02 1.06 16 33 H 0.07 1.18 8.10 -2.39 -0.02 1.16 16 34 H 0.11 1.13 7.66 -2.39 -0.02 1.11 16 35 H 0.11 1.19 8.00 -2.39 -0.02 1.17 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.64 7.07 -2.38 -0.02 1.63 16 38 H 0.11 1.26 7.99 -2.39 -0.02 1.24 16 39 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 40 H 0.04 0.79 8.07 -2.38 -0.02 0.77 16 41 H 0.10 1.53 7.91 -2.38 -0.02 1.51 16 42 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 43 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 44 H 0.28 15.37 8.31 -92.71 -0.77 14.59 16 45 H 0.11 4.88 5.64 -2.91 -0.02 4.87 16 46 H 0.13 3.35 7.93 -2.91 -0.02 3.33 16 47 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.09 1.85 5.65 -2.39 -0.01 1.84 16 49 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 50 H 0.11 1.21 6.02 -2.39 -0.01 1.19 16 Total: -1.00 -69.88 403.11 3.01 -66.87 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.92 Total: 21.24 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 6.69 Total: -23.69 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -6.32 Total: -81.59 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.24 Total: -29.65 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.96 Total: 46.81 kcal Total: -69.88 3.01 -66.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112687502.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.137 kcal (2) G-P(sol) polarization free energy of solvation -69.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds