Wall clock time and date at job start Sat Apr 11 2020 07:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47415 * 2 1 4 4 C 1.52993 * 109.47415 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47215 * 179.97438 * 4 3 2 6 6 C 1.35705 * 117.00208 * 180.02562 * 5 4 3 7 7 C 1.39000 * 119.91213 * 180.02562 * 6 5 4 8 8 C 1.37703 * 120.08426 * 179.97438 * 7 6 5 9 9 C 1.39725 * 119.91846 * 359.97438 * 8 7 6 10 10 C 1.47605 * 120.09211 * 180.02562 * 9 8 7 11 11 O 1.21576 * 119.99855 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99889 * 179.97438 * 10 9 8 13 13 C 1.46507 * 119.99820 * 179.97438 * 12 10 9 14 14 H 1.08999 * 115.51641 * 9.41913 * 13 12 10 15 15 C 1.52993 * 117.40442 * 224.06003 * 13 12 10 16 16 H 1.09003 * 119.54473 * 4.09896 * 15 13 12 17 17 C 1.57699 * 116.11194 * 161.62530 * 15 13 12 18 18 N 1.48141 * 104.67474 * 87.30645 * 17 15 13 19 19 C 1.36938 * 127.83862 * 139.77878 * 18 17 15 20 20 H 1.08003 * 119.99555 * 344.35537 * 19 18 17 21 21 C 1.38809 * 119.99983 * 164.35022 * 19 18 17 22 22 N 1.31618 * 120.00350 * 350.57816 * 21 19 18 23 23 Si 1.86804 * 119.99839 * 170.57312 * 21 19 18 24 24 H 1.48500 * 109.46816 * 60.00474 * 23 21 19 25 25 H 1.48496 * 109.47109 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47419 * 300.00391 * 23 21 19 27 27 C 1.48148 * 104.32421 * 319.77441 * 18 17 15 28 28 C 1.53005 * 117.44002 * 154.83528 * 13 12 10 29 29 H 1.08998 * 119.54012 * 355.83489 * 28 13 12 30 30 C 1.39738 * 119.82226 * 0.27218 * 9 8 7 31 31 C 1.37713 * 119.90836 * 359.47035 * 30 9 8 32 32 H 1.08998 * 109.47584 * 60.00064 * 1 2 3 33 33 H 1.08999 * 109.47402 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46965 * 299.99813 * 1 2 3 35 35 H 1.09002 * 109.47664 * 240.00071 * 2 1 3 36 36 H 1.08998 * 109.47584 * 119.99936 * 2 1 3 37 37 H 1.09007 * 109.47073 * 59.99622 * 3 2 1 38 38 H 1.08998 * 109.46693 * 300.00482 * 3 2 1 39 39 H 1.09006 * 109.46965 * 60.00187 * 4 3 2 40 40 H 1.08998 * 109.47584 * 299.99936 * 4 3 2 41 41 H 1.07997 * 119.95351 * 359.97218 * 7 6 5 42 42 H 1.08010 * 120.03878 * 180.02562 * 8 7 6 43 43 H 0.97001 * 120.00614 * 0.02562 * 12 10 9 44 44 H 1.09004 * 110.91901 * 328.22967 * 17 15 13 45 45 H 1.09000 * 109.83623 * 205.84412 * 17 15 13 46 46 H 0.96999 * 120.00314 * 179.97438 * 22 21 19 47 47 H 1.08991 * 110.41139 * 280.80268 * 27 18 17 48 48 H 1.09004 * 110.50394 * 158.41688 * 27 18 17 49 49 H 1.07998 * 120.04655 * 179.70543 * 30 9 8 50 50 H 1.07998 * 119.94970 * 180.25349 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3917 2.9676 0.0000 7 6 5.9209 4.2529 -0.0001 8 6 7.2855 4.4375 0.0004 9 6 8.1385 3.3307 0.0014 10 6 9.6018 3.5241 0.0025 11 8 10.0665 4.6476 0.0020 12 7 10.4227 2.4553 0.0040 13 6 11.8752 2.6473 0.0045 14 1 12.2134 3.6710 0.1645 15 6 12.7016 1.7709 -0.9387 16 1 12.1945 1.0892 -1.6216 17 6 14.1603 2.2782 -1.2577 18 7 14.9984 1.7175 -0.1724 19 6 16.2557 1.1842 -0.2721 20 1 16.6487 0.9050 -1.2386 21 6 17.0250 1.0025 0.8689 22 7 16.6285 1.5083 2.0175 23 14 18.6231 0.0398 0.7743 24 1 19.5466 0.7063 -0.1786 25 1 19.2507 -0.0109 2.1192 26 1 18.3421 -1.3415 0.3074 27 6 14.1677 1.8648 1.0454 28 6 12.7350 1.5218 0.5835 29 1 12.2525 0.6548 1.0347 30 6 7.6024 2.0403 -0.0038 31 6 6.2366 1.8640 0.0012 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8901 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 1.6766 1.9564 0.8900 38 1 1.6766 1.9563 -0.8899 39 1 3.9337 0.9286 -0.8892 40 1 3.9330 0.9289 0.8908 41 1 5.2610 5.1078 -0.0005 42 1 7.6960 5.4365 0.0008 43 1 10.0521 1.5589 0.0040 44 1 14.2045 3.3673 -1.2480 45 1 14.4828 1.8925 -2.2249 46 1 17.1659 1.3810 2.8149 47 1 14.2129 2.8892 1.4148 48 1 14.4950 1.1684 1.8174 49 1 8.2583 1.1823 -0.0078 50 1 5.8217 0.8670 0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115231796.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:17:15 Heat of formation + Delta-G solvation = -17.015998 kcal Electronic energy + Delta-G solvation = -28230.501307 eV Core-core repulsion = 24223.654047 eV Total energy + Delta-G solvation = -4006.847260 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.59106 -40.84281 -39.80684 -38.21131 -36.13436 -35.97630 -34.42751 -32.53969 -31.95009 -31.30091 -29.94078 -28.80059 -27.59468 -25.46547 -24.65050 -23.67679 -22.87656 -22.05310 -21.84622 -21.46171 -20.90254 -19.41050 -18.85796 -18.50673 -17.79456 -17.35835 -16.87454 -16.61114 -16.17705 -16.00208 -15.63967 -15.58713 -15.37688 -14.99423 -14.75392 -14.63971 -14.45654 -14.36439 -13.88836 -13.74942 -13.58092 -13.31724 -13.24764 -13.15076 -12.87950 -12.85291 -12.67244 -12.17100 -12.15482 -12.01052 -12.00193 -11.89460 -11.84605 -11.73990 -11.68554 -11.43863 -11.15440 -10.84728 -10.70151 -10.13659 -9.79379 -9.28385 -8.92877 -7.91680 -5.28783 -0.17034 0.28915 1.47606 1.50843 1.57684 1.73360 1.91204 2.09696 2.49150 2.71341 2.94135 3.28636 3.55998 3.66638 3.68205 3.80747 3.82920 3.93604 3.94562 3.96863 4.07436 4.11888 4.18502 4.29468 4.32289 4.36103 4.42895 4.51114 4.57106 4.63764 4.79936 4.87044 4.87322 4.92255 4.93663 4.97959 4.99529 5.09346 5.18150 5.26525 5.26776 5.31873 5.33326 5.41137 5.44305 5.44830 5.52270 5.61265 5.64059 6.16064 6.33372 6.48348 6.99885 7.15579 7.67029 8.45714 9.22197 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022062 B = 0.001563 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.850934 B =17907.675044 C =18726.348254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.117 4.117 4 C 0.048 3.952 5 O -0.323 6.323 6 C 0.155 3.845 7 C -0.167 4.167 8 C -0.028 4.028 9 C -0.190 4.190 10 C 0.562 3.438 11 O -0.584 6.584 12 N -0.679 5.679 13 C 0.112 3.888 14 H 0.104 0.896 15 C -0.163 4.163 16 H 0.143 0.857 17 C 0.148 3.852 18 N -0.616 5.616 19 C -0.244 4.244 20 H 0.083 0.917 21 C -0.061 4.061 22 N -0.948 5.948 23 Si 0.983 3.017 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.274 1.274 27 C 0.190 3.810 28 C -0.178 4.178 29 H 0.128 0.872 30 C -0.035 4.035 31 C -0.213 4.213 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.149 0.851 42 H 0.135 0.865 43 H 0.416 0.584 44 H 0.020 0.980 45 H 0.063 0.937 46 H 0.250 0.750 47 H -0.006 1.006 48 H 0.059 0.941 49 H 0.155 0.845 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.126 -4.780 -4.950 34.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.154 4.154 4 C -0.026 4.026 5 O -0.236 6.236 6 C 0.108 3.892 7 C -0.185 4.185 8 C -0.047 4.047 9 C -0.193 4.193 10 C 0.352 3.648 11 O -0.465 6.465 12 N -0.329 5.329 13 C 0.005 3.995 14 H 0.122 0.878 15 C -0.185 4.185 16 H 0.160 0.840 17 C 0.022 3.978 18 N -0.340 5.340 19 C -0.373 4.373 20 H 0.101 0.899 21 C -0.255 4.255 22 N -0.596 5.596 23 Si 0.810 3.190 24 H -0.201 1.201 25 H -0.220 1.220 26 H -0.200 1.200 27 C 0.064 3.936 28 C -0.199 4.199 29 H 0.146 0.854 30 C -0.054 4.054 31 C -0.231 4.231 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.167 0.833 42 H 0.152 0.848 43 H 0.254 0.746 44 H 0.038 0.962 45 H 0.081 0.919 46 H 0.059 0.941 47 H 0.012 0.988 48 H 0.078 0.922 49 H 0.172 0.828 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -33.743 -3.939 -4.827 34.313 hybrid contribution 1.156 -0.556 0.355 1.331 sum -32.587 -4.495 -4.472 33.198 Atomic orbital electron populations 1.21767 0.95141 1.02227 1.02032 1.21426 0.96477 0.94731 1.03048 1.21580 0.91760 0.98603 1.03505 1.23193 0.96083 0.80416 1.02925 1.86027 1.18508 1.31607 1.87493 1.19409 0.82879 0.94333 0.92559 1.20522 0.94483 0.95984 1.07522 1.21102 0.92139 0.98945 0.92529 1.19700 0.91024 0.95678 1.12923 1.18610 0.87261 0.83982 0.74931 1.90759 1.78322 1.25362 1.52105 1.45065 1.04228 1.09738 1.73867 1.21435 0.78819 0.96444 1.02839 0.87799 1.25022 0.96535 1.03388 0.93512 0.83969 1.21834 0.88424 0.95082 0.92433 1.45400 1.14377 1.70028 1.04171 1.19373 0.90089 1.33465 0.94352 0.89895 1.25767 1.01891 1.02030 0.95777 1.70097 1.40592 1.48985 0.99879 0.85103 0.78803 0.78707 0.76393 1.20141 1.22019 1.19995 1.20785 0.85854 0.96853 0.90149 1.24327 0.97137 1.00650 0.97806 0.85450 1.21344 0.95529 0.95676 0.92838 1.21455 0.93399 0.99409 1.08884 0.92619 0.91990 0.92671 0.91028 0.91091 0.91179 0.91108 0.90437 0.90518 0.83310 0.84760 0.74557 0.96171 0.91854 0.94063 0.98766 0.92226 0.82752 0.81981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 71.98 0.71 -0.09 16 2 C -0.12 -0.58 5.93 30.59 0.18 -0.40 16 3 C -0.12 -0.83 5.58 30.59 0.17 -0.66 16 4 C 0.05 0.40 4.74 71.98 0.34 0.74 16 5 O -0.32 -4.75 10.12 -90.25 -0.91 -5.66 16 6 C 0.15 2.49 6.70 22.63 0.15 2.64 16 7 C -0.17 -2.98 9.97 22.33 0.22 -2.75 16 8 C -0.03 -0.61 9.58 22.50 0.22 -0.39 16 9 C -0.19 -4.25 5.87 -20.08 -0.12 -4.37 16 10 C 0.56 16.50 7.76 86.72 0.67 17.17 16 11 O -0.58 -22.48 15.90 -3.96 -0.06 -22.54 16 12 N -0.68 -17.68 5.51 -445.63 -2.46 -20.13 16 13 C 0.11 3.76 5.92 44.99 0.27 4.03 16 14 H 0.10 4.21 7.40 -2.39 -0.02 4.19 16 15 C -0.16 -5.53 7.34 -8.70 -0.06 -5.59 16 16 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 17 C 0.15 6.30 7.10 87.73 0.62 6.92 16 18 N -0.62 -32.26 3.38 -681.41 -2.30 -34.56 16 19 C -0.24 -13.77 10.35 84.03 0.87 -12.90 16 20 H 0.08 4.43 7.85 -2.91 -0.02 4.41 16 21 C -0.06 -3.47 5.40 84.86 0.46 -3.01 16 22 N -0.95 -57.43 10.88 21.65 0.24 -57.19 16 23 Si 0.98 45.37 29.56 68.60 2.03 47.40 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 C 0.19 9.48 5.69 86.53 0.49 9.97 16 28 C -0.18 -6.57 6.98 -9.88 -0.07 -6.64 16 29 H 0.13 4.04 8.14 -2.39 -0.02 4.02 16 30 C -0.04 -0.54 9.53 22.51 0.21 -0.33 16 31 C -0.21 -2.80 9.01 22.33 0.20 -2.60 16 32 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.05 0.30 8.14 -2.38 -0.02 0.28 16 35 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.07 0.56 8.14 -2.38 -0.02 0.55 16 38 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.08 0.47 7.65 -2.38 -0.02 0.45 16 40 H 0.08 0.48 7.65 -2.39 -0.02 0.46 16 41 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 42 H 0.13 3.08 7.64 -2.91 -0.02 3.06 16 43 H 0.42 7.56 6.85 -92.71 -0.63 6.92 16 44 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 46 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 47 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 48 H 0.06 3.32 6.53 -2.38 -0.02 3.31 16 49 H 0.15 1.51 6.39 -2.91 -0.02 1.49 16 50 H 0.16 1.15 6.28 -2.91 -0.02 1.14 16 Total: -1.00 -74.38 408.38 2.38 -72.00 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.31 Total: 18.94 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 5.54 Total: 1.75 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -4.52 Total: -111.89 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.98 Total: -28.20 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -74.38 2.38 -72.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115231796.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.984 kcal (2) G-P(sol) polarization free energy of solvation -74.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds